RNA–Protein interactions for RNA: ENST00000435823.1

COL28A1-203, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL28A1, Length 678 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-203ENST00000435823 ADSSL1Q8N142 457 aa12.31□□□□□ -0.44
COL28A1-203ENST00000435823 TMEM86AQ8N2M4 240 aa12.31□□□□□ -0.44
COL28A1-203ENST00000435823 TOP6BLQ8N6T0 577 aa12.31□□□□□ -0.44
COL28A1-203ENST00000435823 TDRD5Q8NAT2 981 aaKnown RBP12.31□□□□□ -0.44
COL28A1-203ENST00000435823 TMC2Q8TDI7 906 aa12.31□□□□□ -0.44
COL28A1-203ENST00000435823 ZNF707Q96C28 371 aaPredicted RBP12.31□□□□□ -0.44
COL28A1-203ENST00000435823 CYP4F11Q9HBI6 524 aa12.31□□□□□ -0.44
COL28A1-203ENST00000435823 POLIQ9UNA4 740 aa12.31□□□□□ -0.44
COL28A1-203ENST00000435823 TSC2P49815 1807 aa12.31□□□□□ -0.44
COL28A1-203ENST00000435823 BIN1O00499 593 aa12.3□□□□□ -0.44
COL28A1-203ENST00000435823 CCL16O15467 120 aa12.3□□□□□ -0.44
COL28A1-203ENST00000435823 AKAP3O75969 853 aa12.3□□□□□ -0.44
COL28A1-203ENST00000435823 POU2F2P09086 479 aa12.3□□□□□ -0.44
COL28A1-203ENST00000435823 OR4Q2P0C623 313 aa12.3□□□□□ -0.44
COL28A1-203ENST00000435823 EPB41P11171 864 aaKnown RBP12.3□□□□□ -0.44
COL28A1-203ENST00000435823 ATICP31939 592 aa12.3□□□□□ -0.44
COL28A1-203ENST00000435823 VAMP7P51809 220 aa12.3□□□□□ -0.44
COL28A1-203ENST00000435823 CLDN10P78369 228 aa12.3□□□□□ -0.44
COL28A1-203ENST00000435823 MYL7Q01449 175 aa12.3□□□□□ -0.44
COL28A1-203ENST00000435823 LRRC63Q05C16 580 aa12.3□□□□□ -0.44
COL28A1-203ENST00000435823 ENPEPQ07075 957 aa12.3□□□□□ -0.44
COL28A1-203ENST00000435823 ADCY1Q08828 1119 aa12.3□□□□□ -0.44
COL28A1-203ENST00000435823 CAMK4Q16566 473 aa12.3□□□□□ -0.44
COL28A1-203ENST00000435823 CENPPQ6IPU0 288 aa12.3□□□□□ -0.44
COL28A1-203ENST00000435823 RNF19BQ6ZMZ0 732 aa12.3□□□□□ -0.44
COL28A1-203ENST00000435823 DPH6Q7L8W6 267 aa12.3□□□□□ -0.44
COL28A1-203ENST00000435823 OTOP3Q7RTS5 596 aa12.3□□□□□ -0.44
COL28A1-203ENST00000435823 TCEAL8Q8IYN2 117 aa12.3□□□□□ -0.44
COL28A1-203ENST00000435823 DCP1BQ8IZD4 617 aaKnown RBP12.3□□□□□ -0.44
COL28A1-203ENST00000435823 ADGRF2Q8IZF7 708 aa12.3□□□□□ -0.44
COL28A1-203ENST00000435823 PDCL2Q8N4E4 241 aa12.3□□□□□ -0.44
COL28A1-203ENST00000435823 TRIML1Q8N9V2 468 aa12.3□□□□□ -0.44
COL28A1-203ENST00000435823 SPATA18Q8TC71 538 aa12.3□□□□□ -0.44
COL28A1-203ENST00000435823 PLEKHO2Q8TD55 490 aa12.3□□□□□ -0.44
COL28A1-203ENST00000435823 ZNF516Q92618 1163 aa12.3□□□□□ -0.44
COL28A1-203ENST00000435823 SYAP1Q96A49 352 aaPredicted RBP12.3□□□□□ -0.44
COL28A1-203ENST00000435823 ACSF2Q96CM8 615 aaPredicted RBP12.3□□□□□ -0.44
COL28A1-203ENST00000435823 DHTKD1Q96HY7 919 aaPredicted RBP12.3□□□□□ -0.44
COL28A1-203ENST00000435823 MKNK1Q9BUB5 465 aa12.3□□□□□ -0.44
COL28A1-203ENST00000435823 GZF1Q9H116 711 aaPredicted RBP12.3□□□□□ -0.44
COL28A1-203ENST00000435823 WDR6Q9NNW5 1121 aaKnown RBP12.3□□□□□ -0.44
COL28A1-203ENST00000435823 L1RE1Q9UN81 338 aa12.3□□□□□ -0.44
COL28A1-203ENST00000435823 USTQ9Y2C2 406 aa12.3□□□□□ -0.44
COL28A1-203ENST00000435823 CLUHO75153 1309 aa12.3□□□□□ -0.44
COL28A1-203ENST00000435823 TTC28Q96AY4 2481 aa12.3□□□□□ -0.44
COL28A1-203ENST00000435823 C2orf16Q68DN1 1984 aa12.29□□□□□ -0.44
COL28A1-203ENST00000435823 IKBKBO14920 756 aa12.29□□□□□ -0.44
COL28A1-203ENST00000435823 CST3P01034 146 aaPredicted RBP12.29□□□□□ -0.44
COL28A1-203ENST00000435823 SP100P23497 879 aaPredicted RBP12.29□□□□□ -0.44
COL28A1-203ENST00000435823 CCNE1P24864 410 aa12.29□□□□□ -0.44
COL28A1-203ENST00000435823 LHX1P48742 406 aa12.29□□□□□ -0.44
COL28A1-203ENST00000435823 TNNC1P63316 161 aa12.29□□□□□ -0.44
COL28A1-203ENST00000435823 DLG4P78352 724 aa12.29□□□□□ -0.44
COL28A1-203ENST00000435823 FKBP3Q00688 224 aaKnown RBP12.29□□□□□ -0.44
COL28A1-203ENST00000435823 TSPY1Q01534 308 aa12.29□□□□□ -0.44
COL28A1-203ENST00000435823 SMARCB1Q12824 385 aa12.29□□□□□ -0.44
COL28A1-203ENST00000435823 PLD1Q13393 1074 aa12.29□□□□□ -0.44
COL28A1-203ENST00000435823 NCOA4Q13772 614 aa12.29□□□□□ -0.44
COL28A1-203ENST00000435823 MORC3Q14149 939 aa12.29□□□□□ -0.44
COL28A1-203ENST00000435823 SLC39A12Q504Y0 691 aa12.29□□□□□ -0.44
COL28A1-203ENST00000435823 TDRD10Q5VZ19 366 aaKnown RBP12.29□□□□□ -0.44
COL28A1-203ENST00000435823 ANKRD40Q6AI12 368 aa12.29□□□□□ -0.44
COL28A1-203ENST00000435823 SCARA3Q6AZY7 606 aa12.29□□□□□ -0.44
COL28A1-203ENST00000435823 KLHL10Q6JEL2 608 aa12.29□□□□□ -0.44
COL28A1-203ENST00000435823 ELMOD1Q8N336 334 aa12.29□□□□□ -0.44
COL28A1-203ENST00000435823 PLCD3Q8N3E9 789 aa12.29□□□□□ -0.44
COL28A1-203ENST00000435823 OR10T2Q8NGX3 314 aa12.29□□□□□ -0.44
COL28A1-203ENST00000435823 FEZF2Q8TBJ5 459 aa12.29□□□□□ -0.44
COL28A1-203ENST00000435823 PGLYRP2Q96PD5 576 aa12.29□□□□□ -0.44
COL28A1-203ENST00000435823 MMS19Q96T76 1030 aa12.29□□□□□ -0.44
COL28A1-203ENST00000435823 ZCWPW1Q9H0M4 648 aa12.29□□□□□ -0.44
COL28A1-203ENST00000435823 CD320Q9NPF0 282 aa12.29□□□□□ -0.44
COL28A1-203ENST00000435823 DDX43Q9NXZ2 648 aaKnown RBP12.29□□□□□ -0.44
COL28A1-203ENST00000435823 KIAA1468Q9P260 1216 aa12.29□□□□□ -0.44
COL28A1-203ENST00000435823 INSL5Q9Y5Q6 135 aa12.29□□□□□ -0.44
COL28A1-203ENST00000435823 DENND4AQ7Z401 1863 aa12.29□□□□□ -0.44
COL28A1-203ENST00000435823 NCOR1O75376 2440 aa12.28□□□□□ -0.44
COL28A1-203ENST00000435823 SPTBN5Q9NRC6 3674 aaKnown RBP12.28□□□□□ -0.44
COL28A1-203ENST00000435823 BICDL2A1A5D9 508 aa12.28□□□□□ -0.44
COL28A1-203ENST00000435823 MTMR11A4FU01 709 aa12.28□□□□□ -0.44
COL28A1-203ENST00000435823 C2CD4DB7Z1M9 353 aa12.28□□□□□ -0.44
COL28A1-203ENST00000435823 SLC16A3O15427 465 aaKnown RBP12.28□□□□□ -0.44
COL28A1-203ENST00000435823 STX10O60499 249 aa12.28□□□□□ -0.44
COL28A1-203ENST00000435823 SEC24AO95486 1093 aa12.28□□□□□ -0.44
COL28A1-203ENST00000435823 STAU1O95793 577 aaKnown RBP12.28□□□□□ -0.44
COL28A1-203ENST00000435823 C4BPAP04003 597 aaKnown RBP12.28□□□□□ -0.44
COL28A1-203ENST00000435823 PCSK1P29120 753 aa12.28□□□□□ -0.44
COL28A1-203ENST00000435823 GBP2P32456 591 aaPredicted RBP12.28□□□□□ -0.44
COL28A1-203ENST00000435823 MYL6P60660 151 aa12.28□□□□□ -0.44
COL28A1-203ENST00000435823 TWF1Q12792 350 aa12.28□□□□□ -0.44
COL28A1-203ENST00000435823 SOWAHAQ2M3V2 549 aa12.28□□□□□ -0.44
COL28A1-203ENST00000435823 ZNF699Q32M78 642 aa12.28□□□□□ -0.44
COL28A1-203ENST00000435823 WDR72Q3MJ13 1102 aa12.28□□□□□ -0.44
COL28A1-203ENST00000435823 ZACNQ401N2 412 aa12.28□□□□□ -0.44
COL28A1-203ENST00000435823 IQCEQ6IPM2 695 aa12.28□□□□□ -0.44
COL28A1-203ENST00000435823 GRASPQ7Z6J2 395 aaPredicted RBP12.28□□□□□ -0.44
COL28A1-203ENST00000435823 RNF135Q8IUD6 432 aa12.28□□□□□ -0.44
COL28A1-203ENST00000435823 C2orf15Q8WU43 125 aaKnown RBP12.28□□□□□ -0.44
COL28A1-203ENST00000435823 TMEM209Q96SK2 561 aa12.28□□□□□ -0.44
COL28A1-203ENST00000435823 RTP3Q9BQQ7 232 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms