RNA–Protein interactions for RNA: ENST00000435425.1

SHH-203, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 807 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-203ENST00000435425 C1orf220Q5T0J3 134 aa20.04■□□□□ 0.8
SHH-203ENST00000435425 TPGS2Q68CL5 300 aa20.04■□□□□ 0.8
SHH-203ENST00000435425 C15orf39Q6ZRI6 1047 aa20.04■□□□□ 0.8
SHH-203ENST00000435425 TRIML1Q8N9V2 468 aa20.04■□□□□ 0.8
SHH-203ENST00000435425 CMASQ8NFW8 434 aaPredicted RBP20.04■□□□□ 0.8
SHH-203ENST00000435425 OR10T2Q8NGX3 314 aa20.04■□□□□ 0.8
SHH-203ENST00000435425 ZNF707Q96C28 371 aaPredicted RBP20.04■□□□□ 0.8
SHH-203ENST00000435425 NECTIN4Q96NY8 510 aa20.04■□□□□ 0.8
SHH-203ENST00000435425 RTP3Q9BQQ7 232 aa20.04■□□□□ 0.8
SHH-203ENST00000435425 PRKD2Q9BZL6 878 aa20.04■□□□□ 0.8
SHH-203ENST00000435425 NXF1Q9UBU9 619 aaKnown RBP20.04■□□□□ 0.8
SHH-203ENST00000435425 PRKAG3Q9UGI9 489 aa20.04■□□□□ 0.8
SHH-203ENST00000435425 GCLMP48507 274 aa20.03■□□□□ 0.8
SHH-203ENST00000435425 NCOA4Q13772 614 aa20.03■□□□□ 0.8
SHH-203ENST00000435425 SOWAHAQ2M3V2 549 aa20.03■□□□□ 0.8
SHH-203ENST00000435425 SLC39A12Q504Y0 691 aa20.03■□□□□ 0.8
SHH-203ENST00000435425 SV2AQ7L0J3 742 aa20.03■□□□□ 0.8
SHH-203ENST00000435425 OSTM1Q86WC4 334 aa20.03■□□□□ 0.8
SHH-203ENST00000435425 ADGRF2Q8IZF7 708 aa20.03■□□□□ 0.8
SHH-203ENST00000435425 TOP6BLQ8N6T0 577 aa20.03■□□□□ 0.8
SHH-203ENST00000435425 DUSP9Q99956 384 aaKnown RBP20.03■□□□□ 0.8
SHH-203ENST00000435425 MKNK1Q9BUB5 465 aa20.03■□□□□ 0.8
SHH-203ENST00000435425 CD320Q9NPF0 282 aa20.03■□□□□ 0.8
SHH-203ENST00000435425 UTP3Q9NQZ2 479 aaKnown RBP eCLIP20.03■□□□□ 0.8
SHH-203ENST00000435425 DDX43Q9NXZ2 648 aaKnown RBP20.03■□□□□ 0.8
SHH-203ENST00000435425 AFF4Q9UHB7 1163 aaKnown RBP20.03■□□□□ 0.8
SHH-203ENST00000435425 DOCK6Q96HP0 2047 aa20.02■□□□□ 0.8
SHH-203ENST00000435425 BICDL2A1A5D9 508 aa20.02■□□□□ 0.8
SHH-203ENST00000435425 IKBKBO14920 756 aa20.02■□□□□ 0.8
SHH-203ENST00000435425 VNN1O95497 513 aa20.02■□□□□ 0.8
SHH-203ENST00000435425 LRG1P02750 347 aa20.02■□□□□ 0.8
SHH-203ENST00000435425 ACAT1P24752 427 aaKnown RBP20.02■□□□□ 0.8
SHH-203ENST00000435425 TNNC1P63316 161 aa20.02■□□□□ 0.8
SHH-203ENST00000435425 PPP3CAQ08209 521 aa20.02■□□□□ 0.8
SHH-203ENST00000435425 PAK1Q13153 545 aa20.02■□□□□ 0.8
SHH-203ENST00000435425 GPR17Q13304 367 aa20.02■□□□□ 0.8
SHH-203ENST00000435425 UVSSAQ2YD98 709 aa20.02■□□□□ 0.8
SHH-203ENST00000435425 ZNF699Q32M78 642 aa20.02■□□□□ 0.8
SHH-203ENST00000435425 WDR72Q3MJ13 1102 aa20.02■□□□□ 0.8
SHH-203ENST00000435425 ZACNQ401N2 412 aa20.02■□□□□ 0.8
SHH-203ENST00000435425 DCAF17Q5H9S7 520 aaPredicted RBP20.02■□□□□ 0.8
SHH-203ENST00000435425 TCERG1LQ5VWI1 586 aa20.02■□□□□ 0.8
SHH-203ENST00000435425 GJD3Q8N144 294 aa20.02■□□□□ 0.8
SHH-203ENST00000435425 TMEM86AQ8N2M4 240 aa20.02■□□□□ 0.8
SHH-203ENST00000435425 SYAP1Q96A49 352 aaPredicted RBP20.02■□□□□ 0.8
SHH-203ENST00000435425 ZCWPW1Q9H0M4 648 aa20.02■□□□□ 0.8
SHH-203ENST00000435425 SLC27A5Q9Y2P5 690 aa20.02■□□□□ 0.8
SHH-203ENST00000435425 DENND4AQ7Z401 1863 aa20.02■□□□□ 0.8
SHH-203ENST00000435425 SPTBN5Q9NRC6 3674 aaKnown RBP20.02■□□□□ 0.8
SHH-203ENST00000435425 HCRTO43612 131 aa20.01■□□□□ 0.79
SHH-203ENST00000435425 HNRNPA1P09651 372 aaKnown RBP eCLIP20.01■□□□□ 0.79
SHH-203ENST00000435425 ATICP31939 592 aa20.01■□□□□ 0.79
SHH-203ENST00000435425 PIK3CAP42336 1068 aa20.01■□□□□ 0.79
SHH-203ENST00000435425 NTHL1P78549 312 aa20.01■□□□□ 0.79
SHH-203ENST00000435425 MYL7Q01449 175 aa20.01■□□□□ 0.79
SHH-203ENST00000435425 DUSP4Q13115 394 aa20.01■□□□□ 0.79
SHH-203ENST00000435425 TTI2Q6NXR4 508 aa20.01■□□□□ 0.79
SHH-203ENST00000435425 GRASPQ7Z6J2 395 aaPredicted RBP20.01■□□□□ 0.79
SHH-203ENST00000435425 ZC3H3Q8IXZ2 948 aaKnown RBP20.01■□□□□ 0.79
SHH-203ENST00000435425 TCEAL8Q8IYN2 117 aa20.01■□□□□ 0.79
SHH-203ENST00000435425 INSL5Q9Y5Q6 135 aa20.01■□□□□ 0.79
SHH-203ENST00000435425 MTMR11A4FU01 709 aa20■□□□□ 0.79
SHH-203ENST00000435425 SLC16A3O15427 465 aaKnown RBP20■□□□□ 0.79
SHH-203ENST00000435425 XYLBO75191 536 aa20■□□□□ 0.79
SHH-203ENST00000435425 VNN2O95498 520 aa20■□□□□ 0.79
SHH-203ENST00000435425 HLA-DRAP01903 254 aa20■□□□□ 0.79
SHH-203ENST00000435425 TSPY1Q01534 308 aa20■□□□□ 0.79
SHH-203ENST00000435425 CCDC40Q4G0X9 1142 aa20■□□□□ 0.79
SHH-203ENST00000435425 ZNF667Q5HYK9 610 aa20■□□□□ 0.79
SHH-203ENST00000435425 CYP26C1Q6V0L0 522 aa20■□□□□ 0.79
SHH-203ENST00000435425 DPH6Q7L8W6 267 aa20■□□□□ 0.79
SHH-203ENST00000435425 LRRTM3Q86VH5 581 aa20■□□□□ 0.79
SHH-203ENST00000435425 DCP1BQ8IZD4 617 aaKnown RBP20■□□□□ 0.79
SHH-203ENST00000435425 ATAD1Q8NBU5 361 aa20■□□□□ 0.79
SHH-203ENST00000435425 MRPL45Q9BRJ2 306 aaKnown RBP20■□□□□ 0.79
SHH-203ENST00000435425 XYLT2Q9H1B5 865 aa20■□□□□ 0.79
SHH-203ENST00000435425 CRISPLD1Q9H336 500 aa20■□□□□ 0.79
SHH-203ENST00000435425 SNX25Q9H3E2 840 aa20■□□□□ 0.79
SHH-203ENST00000435425 HCFC1R1Q9NWW0 138 aa20■□□□□ 0.79
SHH-203ENST00000435425 C19orf67A6NJJ6 358 aa19.99■□□□□ 0.79
SHH-203ENST00000435425 TNFRSF10AO00220 468 aa19.99■□□□□ 0.79
SHH-203ENST00000435425 PDGFRBP09619 1106 aa19.99■□□□□ 0.79
SHH-203ENST00000435425 HOXA9P31269 272 aa19.99■□□□□ 0.79
SHH-203ENST00000435425 LHX1P48742 406 aa19.99■□□□□ 0.79
SHH-203ENST00000435425 TWF1Q12792 350 aa19.99■□□□□ 0.79
SHH-203ENST00000435425 SGSM1Q2NKQ1 1148 aa19.99■□□□□ 0.79
SHH-203ENST00000435425 SPOPLQ6IQ16 392 aa19.99■□□□□ 0.79
SHH-203ENST00000435425 SCARA5Q6ZMJ2 495 aa19.99■□□□□ 0.79
SHH-203ENST00000435425 FILIP1Q7Z7B0 1213 aa19.99■□□□□ 0.79
SHH-203ENST00000435425 TTC9BQ8N6N2 239 aa19.99■□□□□ 0.79
SHH-203ENST00000435425 OR6B3Q8NGW1 331 aa19.99■□□□□ 0.79
SHH-203ENST00000435425 KBTBD7Q8WVZ9 684 aa19.99■□□□□ 0.79
SHH-203ENST00000435425 CEP63Q96MT8 703 aa19.99■□□□□ 0.79
SHH-203ENST00000435425 PI4K2AQ9BTU6 479 aa19.99■□□□□ 0.79
SHH-203ENST00000435425 WDR6Q9NNW5 1121 aaKnown RBP19.99■□□□□ 0.79
SHH-203ENST00000435425 TMLHEQ9NVH6 421 aa19.99■□□□□ 0.79
SHH-203ENST00000435425 ABI2Q9NYB9 513 aaPredicted RBP19.99■□□□□ 0.79
SHH-203ENST00000435425 ARMCX3Q9UH62 379 aaPredicted RBP19.99■□□□□ 0.79
SHH-203ENST00000435425 NR2E1Q9Y466 385 aa19.99■□□□□ 0.79
SHH-203ENST00000435425 CLUHO75153 1309 aa19.99■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms