RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 FIZ1Q96SL8 496 aa15.7■□□□□ 0.1
SDC1-204ENST00000429035 CHRDQ9H2X0 955 aa15.7■□□□□ 0.1
SDC1-204ENST00000429035 LMAN1LQ9HAT1 526 aa15.7■□□□□ 0.1
SDC1-204ENST00000429035 ABI2Q9NYB9 513 aaPredicted RBP15.7■□□□□ 0.1
SDC1-204ENST00000429035 TBC1D7Q9P0N9 293 aa15.7■□□□□ 0.1
SDC1-204ENST00000429035 CCDC39Q9UFE4 941 aa15.7■□□□□ 0.1
SDC1-204ENST00000429035 USP18Q9UMW8 372 aa15.7■□□□□ 0.1
SDC1-204ENST00000429035 CLIC4Q9Y696 253 aa15.7■□□□□ 0.1
SDC1-204ENST00000429035 CYB561D2O14569 222 aa15.69■□□□□ 0.1
SDC1-204ENST00000429035 CEBPZQ03701 1054 aaKnown RBP15.69■□□□□ 0.1
SDC1-204ENST00000429035 SLFN12LQ6IEE8 588 aa15.69■□□□□ 0.1
SDC1-204ENST00000429035 DNAJB7Q7Z6W7 309 aaPredicted RBP15.69■□□□□ 0.1
SDC1-204ENST00000429035 ARID3BQ8IVW6 561 aaPredicted RBP15.69■□□□□ 0.1
SDC1-204ENST00000429035 THEM5Q8N1Q8 247 aa15.69■□□□□ 0.1
SDC1-204ENST00000429035 GIPC2Q8TF65 315 aa15.69■□□□□ 0.1
SDC1-204ENST00000429035 KCNN1Q92952 543 aa15.69■□□□□ 0.1
SDC1-204ENST00000429035 PSMG2Q969U7 264 aa15.69■□□□□ 0.1
SDC1-204ENST00000429035 E2F7Q96AV8 911 aa15.69■□□□□ 0.1
SDC1-204ENST00000429035 EPSTI1Q96J88 318 aa15.69■□□□□ 0.1
SDC1-204ENST00000429035 ZFYVE19Q96K21 471 aa15.69■□□□□ 0.1
SDC1-204ENST00000429035 LRRC3Q9BY71 257 aa15.69■□□□□ 0.1
SDC1-204ENST00000429035 MRPL44Q9H9J2 332 aaKnown RBP15.69■□□□□ 0.1
SDC1-204ENST00000429035 TRPV4Q9HBA0 871 aa15.69■□□□□ 0.1
SDC1-204ENST00000429035 RBM12Q9NTZ6 932 aaKnown RBP15.69■□□□□ 0.1
SDC1-204ENST00000429035 DPP3Q9NY33 737 aa15.69■□□□□ 0.1
SDC1-204ENST00000429035 GMEB2Q9UKD1 530 aa15.69■□□□□ 0.1
SDC1-204ENST00000429035 DSEQ9UL01 958 aa15.69■□□□□ 0.1
SDC1-204ENST00000429035 RAB23Q9ULC3 237 aa15.69■□□□□ 0.1
SDC1-204ENST00000429035 DERAQ9Y315 318 aa15.69■□□□□ 0.1
SDC1-204ENST00000429035 RALGAPA1Q6GYQ0 2036 aa15.68■□□□□ 0.1
SDC1-204ENST00000429035 PIRO00625 290 aa15.68■□□□□ 0.1
SDC1-204ENST00000429035 GCNT3O95395 438 aa15.68■□□□□ 0.1
SDC1-204ENST00000429035 CCR3P51677 355 aa15.68■□□□□ 0.1
SDC1-204ENST00000429035 FZD5Q13467 585 aa15.68■□□□□ 0.1
SDC1-204ENST00000429035 PRR23BQ6ZRT6 265 aa15.68■□□□□ 0.1
SDC1-204ENST00000429035 USP49Q70CQ1 688 aa15.68■□□□□ 0.1
SDC1-204ENST00000429035 GAREM2Q75VX8 874 aa15.68■□□□□ 0.1
SDC1-204ENST00000429035 EFCAB13Q8IY85 973 aa15.68■□□□□ 0.1
SDC1-204ENST00000429035 ZBTB44Q8NCP5 570 aa15.68■□□□□ 0.1
SDC1-204ENST00000429035 SAAL1Q96ER3 474 aa15.68■□□□□ 0.1
SDC1-204ENST00000429035 ZNF560Q96MR9 790 aa15.68■□□□□ 0.1
SDC1-204ENST00000429035 CCSER1Q9C0I3 900 aa15.68■□□□□ 0.1
SDC1-204ENST00000429035 ASB7Q9H672 318 aa15.68■□□□□ 0.1
SDC1-204ENST00000429035 STK17AQ9UEE5 414 aa15.68■□□□□ 0.1
SDC1-204ENST00000429035 C2CD2Q9Y426 696 aa15.68■□□□□ 0.1
SDC1-204ENST00000429035 ASB3Q9Y575 518 aa15.68■□□□□ 0.1
SDC1-204ENST00000429035 CEP250Q9BV73 2442 aa15.68■□□□□ 0.1
SDC1-204ENST00000429035 ANO9A1A5B4 782 aa15.67■□□□□ 0.1
SDC1-204ENST00000429035 CHADO15335 359 aa15.67■□□□□ 0.1
SDC1-204ENST00000429035 PRAMEF12O95522 483 aa15.67■□□□□ 0.1
SDC1-204ENST00000429035 FGF19O95750 216 aa15.67■□□□□ 0.1
SDC1-204ENST00000429035 ADRB2P07550 413 aa15.67■□□□□ 0.1
SDC1-204ENST00000429035 IDEP14735 1019 aa15.67■□□□□ 0.1
SDC1-204ENST00000429035 ATF6P18850 670 aa15.67■□□□□ 0.1
SDC1-204ENST00000429035 DDIT3P35638 169 aa15.67■□□□□ 0.1
SDC1-204ENST00000429035 TFAMQ00059 246 aaKnown RBP15.67■□□□□ 0.1
SDC1-204ENST00000429035 SATB1Q01826 763 aa15.67■□□□□ 0.1
SDC1-204ENST00000429035 LRRC32Q14392 662 aa15.67■□□□□ 0.1
SDC1-204ENST00000429035 RSPO4Q2I0M5 234 aaPredicted RBP15.67■□□□□ 0.1
SDC1-204ENST00000429035 SV2CQ496J9 727 aa15.67■□□□□ 0.1
SDC1-204ENST00000429035 RRAGBQ5VZM2 374 aa15.67■□□□□ 0.1
SDC1-204ENST00000429035 WSCD1Q658N2 575 aa15.67■□□□□ 0.1
SDC1-204ENST00000429035 STKLD1Q8NE28 680 aa15.67■□□□□ 0.1
SDC1-204ENST00000429035 HVCN1Q96D96 273 aa15.67■□□□□ 0.1
SDC1-204ENST00000429035 CLIC6Q96NY7 704 aa15.67■□□□□ 0.1
SDC1-204ENST00000429035 FAM213AQ9BRX8 229 aa15.67■□□□□ 0.1
SDC1-204ENST00000429035 IER2Q9BTL4 223 aa15.67■□□□□ 0.1
SDC1-204ENST00000429035 ZCWPW1Q9H0M4 648 aa15.67■□□□□ 0.1
SDC1-204ENST00000429035 SMG9Q9H0W8 520 aaKnown RBP15.67■□□□□ 0.1
SDC1-204ENST00000429035 EPC1Q9H2F5 836 aa15.67■□□□□ 0.1
SDC1-204ENST00000429035 TRPV5Q9NQA5 729 aa15.67■□□□□ 0.1
SDC1-204ENST00000429035 EXOC7Q9UPT5 735 aa15.67■□□□□ 0.1
SDC1-204ENST00000429035 ATG2BQ96BY7 2078 aa15.67■□□□□ 0.1
SDC1-204ENST00000429035 DMXL1Q9Y485 3027 aa15.67■□□□□ 0.1
SDC1-204ENST00000429035 ZNF292O60281 2723 aa15.67■□□□□ 0.1
SDC1-204ENST00000429035 MED19A0JLT2 244 aaPredicted RBP15.66■□□□□ 0.1
SDC1-204ENST00000429035 SPECC1L-ADORA2AF8WAN1 911 aa15.66■□□□□ 0.1
SDC1-204ENST00000429035 ARNTLO00327 626 aa15.66■□□□□ 0.1
SDC1-204ENST00000429035 LILRB5O75023 590 aa15.66■□□□□ 0.1
SDC1-204ENST00000429035 IL18RAPO95256 599 aa15.66■□□□□ 0.1
SDC1-204ENST00000429035 CYP11A1P05108 521 aa15.66■□□□□ 0.1
SDC1-204ENST00000429035 PAX3P23760 479 aa15.66■□□□□ 0.1
SDC1-204ENST00000429035 CDC25CP30307 473 aa15.66■□□□□ 0.1
SDC1-204ENST00000429035 POLR2BP30876 1174 aaKnown RBP15.66■□□□□ 0.1
SDC1-204ENST00000429035 TUFMP49411 452 aaKnown RBP15.66■□□□□ 0.1
SDC1-204ENST00000429035 NRLP54845 237 aa15.66■□□□□ 0.1
SDC1-204ENST00000429035 BFSP1Q12934 665 aa15.66■□□□□ 0.1
SDC1-204ENST00000429035 PUM1Q14671 1186 aaKnown RBP eCLIP15.66■□□□□ 0.1
SDC1-204ENST00000429035 ARHGAP29Q52LW3 1261 aa15.66■□□□□ 0.1
SDC1-204ENST00000429035 FAM173BQ6P4H8 233 aa15.66■□□□□ 0.1
SDC1-204ENST00000429035 Q6ZS52 159 aa15.66■□□□□ 0.1
SDC1-204ENST00000429035 SYCP3Q8IZU3 236 aa15.66■□□□□ 0.1
SDC1-204ENST00000429035 ZNF687Q8N1G0 1237 aa15.66■□□□□ 0.1
SDC1-204ENST00000429035 BPIFB1Q8TDL5 484 aa15.66■□□□□ 0.1
SDC1-204ENST00000429035 MSANTD3Q96H12 275 aa15.66■□□□□ 0.1
SDC1-204ENST00000429035 MKNK1Q9BUB5 465 aa15.66■□□□□ 0.1
SDC1-204ENST00000429035 FAM126AQ9BYI3 521 aaPredicted RBP15.66■□□□□ 0.1
SDC1-204ENST00000429035 C8orf33Q9H7E9 229 aaPredicted RBP15.66■□□□□ 0.1
SDC1-204ENST00000429035 GTSE1Q9NYZ3 720 aa15.66■□□□□ 0.1
SDC1-204ENST00000429035 FBXO2Q9UK22 296 aaPredicted RBP15.66■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms