RNA–Protein interactions for RNA: ENST00000423636.6

PTPRN-204, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene PTPRN, Length 3,313 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-204ENST00000423636 C1orf127Q8N9H9 656 aa12.64□□□□□ -0.39
PTPRN-204ENST00000423636 ZNF473Q8WTR7 871 aaKnown RBP12.64□□□□□ -0.39
PTPRN-204ENST00000423636 KLF6Q99612 283 aaPredicted RBP12.64□□□□□ -0.39
PTPRN-204ENST00000423636 B3GNT5Q9BYG0 378 aa12.64□□□□□ -0.39
PTPRN-204ENST00000423636 C17orf75Q9HAS0 396 aa12.64□□□□□ -0.39
PTPRN-204ENST00000423636 AAASQ9NRG9 546 aa12.64□□□□□ -0.39
PTPRN-204ENST00000423636 METTL5Q9NRN9 209 aaKnown RBP12.64□□□□□ -0.39
PTPRN-204ENST00000423636 AGTPBP1Q9UPW5 1226 aa12.64□□□□□ -0.39
PTPRN-204ENST00000423636 ADGRA2Q96PE1 1338 aa12.63□□□□□ -0.39
PTPRN-204ENST00000423636 PDHXO00330 501 aa12.63□□□□□ -0.39
PTPRN-204ENST00000423636 TP73O15350 636 aa12.63□□□□□ -0.39
PTPRN-204ENST00000423636 IL1R2P27930 398 aa12.63□□□□□ -0.39
PTPRN-204ENST00000423636 PSMC1P62191 440 aaKnown RBP12.63□□□□□ -0.39
PTPRN-204ENST00000423636 PIH1D1Q9NWS0 290 aaKnown RBP12.63□□□□□ -0.39
PTPRN-204ENST00000423636 UVRAGQ9P2Y5 699 aa12.63□□□□□ -0.39
PTPRN-204ENST00000423636 CPA4Q9UI42 421 aa12.63□□□□□ -0.39
PTPRN-204ENST00000423636 SIX4Q9UIU6 781 aa12.63□□□□□ -0.39
PTPRN-204ENST00000423636 ANAPC5Q9UJX4 755 aa12.63□□□□□ -0.39
PTPRN-204ENST00000423636 DOCK1Q14185 1865 aa12.63□□□□□ -0.39
PTPRN-204ENST00000423636 C5orf42Q9H799 3197 aa12.63□□□□□ -0.39
PTPRN-204ENST00000423636 SGK1O00141 431 aa12.63□□□□□ -0.39
PTPRN-204ENST00000423636 ATP2A1O14983 1001 aa12.63□□□□□ -0.39
PTPRN-204ENST00000423636 OGTO15294 1046 aa12.63□□□□□ -0.39
PTPRN-204ENST00000423636 DYNC1LI2O43237 492 aaPredicted RBP12.63□□□□□ -0.39
PTPRN-204ENST00000423636 VIMP08670 466 aaKnown RBP12.63□□□□□ -0.39
PTPRN-204ENST00000423636 ARF4P18085 180 aaPredicted RBP12.63□□□□□ -0.39
PTPRN-204ENST00000423636 PSMA2P25787 234 aa12.63□□□□□ -0.39
PTPRN-204ENST00000423636 ATXN1P54253 815 aaKnown RBP12.63□□□□□ -0.39
PTPRN-204ENST00000423636 SLFN12LQ6IEE8 588 aa12.63□□□□□ -0.39
PTPRN-204ENST00000423636 CPLX4Q7Z7G2 160 aa12.63□□□□□ -0.39
PTPRN-204ENST00000423636 FEZF2Q8TBJ5 459 aa12.63□□□□□ -0.39
PTPRN-204ENST00000423636 C18orf25Q96B23 403 aaPredicted RBP12.63□□□□□ -0.39
PTPRN-204ENST00000423636 RPS6KC1Q96S38 1066 aa12.63□□□□□ -0.39
PTPRN-204ENST00000423636 NIFKQ9BYG3 293 aaKnown RBP12.63□□□□□ -0.39
PTPRN-204ENST00000423636 RPF1Q9H9Y2 349 aaKnown RBP12.63□□□□□ -0.39
PTPRN-204ENST00000423636 M0QYV0 167 aa12.62□□□□□ -0.39
PTPRN-204ENST00000423636 PROSCO94903 275 aa12.62□□□□□ -0.39
PTPRN-204ENST00000423636 ASS1P00966 412 aaKnown RBP12.62□□□□□ -0.39
PTPRN-204ENST00000423636 IVLP07476 585 aa12.62□□□□□ -0.39
PTPRN-204ENST00000423636 GDF10P55107 478 aa12.62□□□□□ -0.39
PTPRN-204ENST00000423636 PPP2R2AP63151 447 aa12.62□□□□□ -0.39
PTPRN-204ENST00000423636 BEX3Q00994 111 aa12.62□□□□□ -0.39
PTPRN-204ENST00000423636 GPS1Q13098 491 aa12.62□□□□□ -0.39
PTPRN-204ENST00000423636 BRSK2Q8IWQ3 736 aa12.62□□□□□ -0.39
PTPRN-204ENST00000423636 MYCBPAPQ8TBZ2 947 aa12.62□□□□□ -0.39
PTPRN-204ENST00000423636 OSMRQ99650 979 aa12.62□□□□□ -0.39
PTPRN-204ENST00000423636 PABPC3Q9H361 631 aaKnown RBP12.62□□□□□ -0.39
PTPRN-204ENST00000423636 IFT122Q9HBG6 1241 aa12.62□□□□□ -0.39
PTPRN-204ENST00000423636 PASKQ96RG2 1323 aa12.62□□□□□ -0.39
PTPRN-204ENST00000423636 LCTP09848 1927 aa12.62□□□□□ -0.39
PTPRN-204ENST00000423636 GOLGA8RI6L899 631 aa12.62□□□□□ -0.39
PTPRN-204ENST00000423636 FAM189A1O60320 539 aa12.62□□□□□ -0.39
PTPRN-204ENST00000423636 CYP1A1P04798 512 aaPredicted RBP12.62□□□□□ -0.39
PTPRN-204ENST00000423636 LGALS2P05162 132 aa12.62□□□□□ -0.39
PTPRN-204ENST00000423636 CENPCQ03188 943 aa12.62□□□□□ -0.39
PTPRN-204ENST00000423636 IZUMO3Q5VZ72 239 aa12.62□□□□□ -0.39
PTPRN-204ENST00000423636 SRRM1Q8IYB3 904 aaKnown RBP12.62□□□□□ -0.39
PTPRN-204ENST00000423636 DCLK3Q9C098 648 aa12.62□□□□□ -0.39
PTPRN-204ENST00000423636 SPON1Q9HCB6 807 aa12.62□□□□□ -0.39
PTPRN-204ENST00000423636 ALG13Q9NP73 1137 aaKnown RBP12.62□□□□□ -0.39
PTPRN-204ENST00000423636 CES2O00748 559 aa12.62□□□□□ -0.39
PTPRN-204ENST00000423636 RASGRF2O14827 1237 aa12.62□□□□□ -0.39
PTPRN-204ENST00000423636 RIPK2O43353 540 aa12.62□□□□□ -0.39
PTPRN-204ENST00000423636 NPTXRO95502 500 aa12.62□□□□□ -0.39
PTPRN-204ENST00000423636 ATF2P15336 505 aa12.62□□□□□ -0.39
PTPRN-204ENST00000423636 ANXA13P27216 316 aa12.62□□□□□ -0.39
PTPRN-204ENST00000423636 NFX1Q12986 1120 aaKnown RBP12.62□□□□□ -0.39
PTPRN-204ENST00000423636 SH3D19Q5HYK7 790 aa12.62□□□□□ -0.39
PTPRN-204ENST00000423636 KDM7AQ6ZMT4 941 aa12.62□□□□□ -0.39
PTPRN-204ENST00000423636 CTU1Q7Z7A3 348 aaKnown RBP12.62□□□□□ -0.39
PTPRN-204ENST00000423636 DYDC1Q8WWB3 177 aa12.62□□□□□ -0.39
PTPRN-204ENST00000423636 TRIM56Q9BRZ2 755 aaKnown RBP12.62□□□□□ -0.39
PTPRN-204ENST00000423636 PCDH10Q9P2E7 1040 aa12.62□□□□□ -0.39
PTPRN-204ENST00000423636 MTRF1LQ9UGC7 380 aaKnown RBP12.62□□□□□ -0.39
PTPRN-204ENST00000423636 IGKV6D-21A0A0A0MT36 114 aa12.61□□□□□ -0.39
PTPRN-204ENST00000423636 CCL15-CCL14A0A0B4J2E2 113 aa12.61□□□□□ -0.39
PTPRN-204ENST00000423636 TNNC2P02585 160 aa12.61□□□□□ -0.39
PTPRN-204ENST00000423636 ICAM3P32942 547 aa12.61□□□□□ -0.39
PTPRN-204ENST00000423636 ASPAP45381 313 aa12.61□□□□□ -0.39
PTPRN-204ENST00000423636 ARSEP51690 589 aa12.61□□□□□ -0.39
PTPRN-204ENST00000423636 CCL15Q16663 113 aa12.61□□□□□ -0.39
PTPRN-204ENST00000423636 ZNF618Q5T7W0 954 aa12.61□□□□□ -0.39
PTPRN-204ENST00000423636 DPY19L2Q6NUT2 758 aa12.61□□□□□ -0.39
PTPRN-204ENST00000423636 ACOT1Q86TX2 421 aa12.61□□□□□ -0.39
PTPRN-204ENST00000423636 EIF2AQ9BY44 585 aaKnown RBP12.61□□□□□ -0.39
PTPRN-204ENST00000423636 NIF3L1Q9GZT8 377 aa12.61□□□□□ -0.39
PTPRN-204ENST00000423636 SNTG2Q9NY99 539 aa12.61□□□□□ -0.39
PTPRN-204ENST00000423636 CPSF3Q9UKF6 684 aaKnown RBP12.61□□□□□ -0.39
PTPRN-204ENST00000423636 MAGED2Q9UNF1 606 aaPredicted RBP12.61□□□□□ -0.39
PTPRN-204ENST00000423636 HMGB1P1B2RPK0 211 aaPredicted RBP12.61□□□□□ -0.39
PTPRN-204ENST00000423636 BTBD19C9JJ37 291 aa12.61□□□□□ -0.39
PTPRN-204ENST00000423636 PPFIA2O75334 1257 aa12.61□□□□□ -0.39
PTPRN-204ENST00000423636 ERBB2P04626 1255 aa12.61□□□□□ -0.39
PTPRN-204ENST00000423636 TFE3P19532 575 aaPredicted RBP12.61□□□□□ -0.39
PTPRN-204ENST00000423636 MBTD1Q05BQ5 628 aa12.61□□□□□ -0.39
PTPRN-204ENST00000423636 PTP4A2Q12974 167 aa12.61□□□□□ -0.39
PTPRN-204ENST00000423636 TTLL4Q14679 1199 aa12.61□□□□□ -0.39
PTPRN-204ENST00000423636 EFTUD2Q15029 972 aaKnown RBP eCLIP12.61□□□□□ -0.39
PTPRN-204ENST00000423636 ZNF667Q5HYK9 610 aa12.61□□□□□ -0.39
PTPRN-204ENST00000423636 IER5Q5VY09 327 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms