RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 PLA2G3Q9NZ20 509 aa3.01□□□□□ -1.93
VPS13A-208ENST00000423463 CNOT7Q9UIV1 285 aaKnown RBP3.01□□□□□ -1.93
VPS13A-208ENST00000423463 SYNPO2Q9UMS6 1093 aa3.01□□□□□ -1.93
VPS13A-208ENST00000423463 NUMBLQ9Y6R0 609 aa3.01□□□□□ -1.93
VPS13A-208ENST00000423463 MYO3BQ8WXR4 1341 aa3.01□□□□□ -1.93
VPS13A-208ENST00000423463 COL4A1P02462 1669 aa3.01□□□□□ -1.93
VPS13A-208ENST00000423463 LRRC37AA6NMS7 1700 aa3.01□□□□□ -1.93
VPS13A-208ENST00000423463 PNMA6EA0A0J9YXQ4 647 aa3□□□□□ -1.93
VPS13A-208ENST00000423463 SNAP23O00161 211 aa3□□□□□ -1.93
VPS13A-208ENST00000423463 TMEM127O75204 238 aa3□□□□□ -1.93
VPS13A-208ENST00000423463 SURF6O75683 361 aaKnown RBP3□□□□□ -1.93
VPS13A-208ENST00000423463 ALDH1A2O94788 518 aa3□□□□□ -1.93
VPS13A-208ENST00000423463 COMTP21964 271 aa3□□□□□ -1.93
VPS13A-208ENST00000423463 KLRK1P26718 216 aa3□□□□□ -1.93
VPS13A-208ENST00000423463 MAGEA10P43363 369 aaPredicted RBP3□□□□□ -1.93
VPS13A-208ENST00000423463 KIR2DL3P43628 341 aa3□□□□□ -1.93
VPS13A-208ENST00000423463 RRP1P56182 461 aaKnown RBP3□□□□□ -1.93
VPS13A-208ENST00000423463 ERVK-21P61565 698 aa3□□□□□ -1.93
VPS13A-208ENST00000423463 MTMR1Q13613 665 aa3□□□□□ -1.93
VPS13A-208ENST00000423463 ABCB5Q2M3G0 1257 aa3□□□□□ -1.93
VPS13A-208ENST00000423463 FAM214AQ32MH5 1076 aa3□□□□□ -1.93
VPS13A-208ENST00000423463 HSP90AB4PQ58FF6 505 aa3□□□□□ -1.93
VPS13A-208ENST00000423463 TOR2AQ5JU69 321 aa3□□□□□ -1.93
VPS13A-208ENST00000423463 DACT2Q5SW24 774 aa3□□□□□ -1.93
VPS13A-208ENST00000423463 RNF219Q5W0B1 726 aaPredicted RBP3□□□□□ -1.93
VPS13A-208ENST00000423463 CEP85Q6P2H3 762 aa3□□□□□ -1.93
VPS13A-208ENST00000423463 NECAB2Q7Z6G3 386 aa3□□□□□ -1.93
VPS13A-208ENST00000423463 ADGRE4PQ86SQ3 457 aa3□□□□□ -1.93
VPS13A-208ENST00000423463 ZNF808Q8N4W9 903 aaPredicted RBP3□□□□□ -1.93
VPS13A-208ENST00000423463 FBXO18Q8NFZ0 1043 aa3□□□□□ -1.93
VPS13A-208ENST00000423463 SAMD11Q96NU1 681 aa3□□□□□ -1.93
VPS13A-208ENST00000423463 SMAD5Q99717 465 aaKnown RBP3□□□□□ -1.93
VPS13A-208ENST00000423463 KLC2Q9H0B6 622 aa3□□□□□ -1.93
VPS13A-208ENST00000423463 SIL1Q9H173 461 aa3□□□□□ -1.93
VPS13A-208ENST00000423463 SLC6A15Q9H2J7 730 aa3□□□□□ -1.93
VPS13A-208ENST00000423463 GPR108Q9NPR9 543 aa3□□□□□ -1.93
VPS13A-208ENST00000423463 DMRT3Q9NQL9 472 aa3□□□□□ -1.93
VPS13A-208ENST00000423463 CCM2LQ9NUG4 571 aaPredicted RBP3□□□□□ -1.93
VPS13A-208ENST00000423463 GNL3LQ9NVN8 582 aaKnown RBP3□□□□□ -1.93
VPS13A-208ENST00000423463 PGAP2Q9UHJ9 254 aa3□□□□□ -1.93
VPS13A-208ENST00000423463 PA2G4Q9UQ80 394 aaKnown RBP3□□□□□ -1.93
VPS13A-208ENST00000423463 SH3BP1Q9Y3L3 701 aa3□□□□□ -1.93
VPS13A-208ENST00000423463 CDY2AQ9Y6F7 541 aa3□□□□□ -1.93
VPS13A-208ENST00000423463 DUOX1Q9NRD9 1551 aa3□□□□□ -1.93
VPS13A-208ENST00000423463 FAM205AQ6ZU69 1335 aa3□□□□□ -1.93
VPS13A-208ENST00000423463 COL4A5P29400 1685 aa3□□□□□ -1.93
VPS13A-208ENST00000423463 TAF1P21675 1872 aa3□□□□□ -1.93
VPS13A-208ENST00000423463 DICER1Q9UPY3 1922 aaKnown RBP3□□□□□ -1.93
VPS13A-208ENST00000423463 DAPK3O43293 454 aa3□□□□□ -1.93
VPS13A-208ENST00000423463 ADCY6O43306 1168 aa3□□□□□ -1.93
VPS13A-208ENST00000423463 MT-CO1P00395 513 aa3□□□□□ -1.93
VPS13A-208ENST00000423463 ACO1P21399 889 aaKnown RBP3□□□□□ -1.93
VPS13A-208ENST00000423463 CASRP41180 1078 aa3□□□□□ -1.93
VPS13A-208ENST00000423463 GYG1P46976 350 aa3□□□□□ -1.93
VPS13A-208ENST00000423463 ZNF280AP59817 542 aaPredicted RBP3□□□□□ -1.93
VPS13A-208ENST00000423463 ADAM17P78536 824 aa3□□□□□ -1.93
VPS13A-208ENST00000423463 TFCP2Q12800 502 aa3□□□□□ -1.93
VPS13A-208ENST00000423463 SPIDRQ14159 915 aa3□□□□□ -1.93
VPS13A-208ENST00000423463 ATP2B3Q16720 1220 aa3□□□□□ -1.93
VPS13A-208ENST00000423463 C20orf194Q5TEA3 1177 aa3□□□□□ -1.93
VPS13A-208ENST00000423463 ABHD15Q6UXT9 468 aa3□□□□□ -1.93
VPS13A-208ENST00000423463 ERC1Q8IUD2 1116 aa3□□□□□ -1.93
VPS13A-208ENST00000423463 GLB1L2Q8IW92 636 aa3□□□□□ -1.93
VPS13A-208ENST00000423463 MB21D1Q8N884 522 aa3□□□□□ -1.93
VPS13A-208ENST00000423463 TSPEARQ8WU66 669 aa3□□□□□ -1.93
VPS13A-208ENST00000423463 TBC1D22AQ8WUA7 517 aa3□□□□□ -1.93
VPS13A-208ENST00000423463 HOMER2Q9NSB8 354 aa3□□□□□ -1.93
VPS13A-208ENST00000423463 DNAJC28Q9NX36 388 aa3□□□□□ -1.93
VPS13A-208ENST00000423463 SLC5A4Q9NY91 659 aa3□□□□□ -1.93
VPS13A-208ENST00000423463 HECAQ9UBI9 543 aaPredicted RBP3□□□□□ -1.93
VPS13A-208ENST00000423463 KCNG1Q9UIX4 513 aa3□□□□□ -1.93
VPS13A-208ENST00000423463 HDAC9Q9UKV0 1011 aa3□□□□□ -1.93
VPS13A-208ENST00000423463 ZNF609O15014 1411 aa3□□□□□ -1.93
VPS13A-208ENST00000423463 WDR90Q96KV7 1748 aa2.99□□□□□ -1.93
VPS13A-208ENST00000423463 FRAT2O75474 233 aaPredicted RBP2.99□□□□□ -1.93
VPS13A-208ENST00000423463 FSBPO95073 299 aa2.99□□□□□ -1.93
VPS13A-208ENST00000423463 PDGFRBP09619 1106 aa2.99□□□□□ -1.93
VPS13A-208ENST00000423463 ZNF20P17024 532 aa2.99□□□□□ -1.93
VPS13A-208ENST00000423463 GPR3P46089 330 aa2.99□□□□□ -1.93
VPS13A-208ENST00000423463 GUCY2FP51841 1108 aa2.99□□□□□ -1.93
VPS13A-208ENST00000423463 SESN2P58004 480 aaPredicted RBP2.99□□□□□ -1.93
VPS13A-208ENST00000423463 TIMM10P62072 90 aa2.99□□□□□ -1.93
VPS13A-208ENST00000423463 OS9Q13438 667 aaPredicted RBP2.99□□□□□ -1.93
VPS13A-208ENST00000423463 CLUL1Q15846 466 aa2.99□□□□□ -1.93
VPS13A-208ENST00000423463 SPDYAQ5MJ70 313 aa2.99□□□□□ -1.93
VPS13A-208ENST00000423463 ELOA2Q8IYF1 753 aaPredicted RBP2.99□□□□□ -1.93
VPS13A-208ENST00000423463 GLB1L3Q8NCI6 653 aaPredicted RBP2.99□□□□□ -1.93
VPS13A-208ENST00000423463 PPP1R14CQ8TAE6 165 aa2.99□□□□□ -1.93
VPS13A-208ENST00000423463 PGBD4Q96DM1 585 aa2.99□□□□□ -1.93
VPS13A-208ENST00000423463 ACAP3Q96P50 834 aa2.99□□□□□ -1.93
VPS13A-208ENST00000423463 MRIQ9BWK5 157 aa2.99□□□□□ -1.93
VPS13A-208ENST00000423463 JAG2Q9Y219 1238 aa2.99□□□□□ -1.93
VPS13A-208ENST00000423463 MYH3P11055 1940 aa2.99□□□□□ -1.93
VPS13A-208ENST00000423463 LTBP1Q14766 1721 aa2.99□□□□□ -1.93
VPS13A-208ENST00000423463 CACNA1SQ13698 1873 aa2.99□□□□□ -1.93
VPS13A-208ENST00000423463 CCDC88AQ3V6T2 1871 aa2.99□□□□□ -1.93
VPS13A-208ENST00000423463 A0A1B0GUL7 405 aa2.99□□□□□ -1.93
VPS13A-208ENST00000423463 VSIG10L2P0DP72 767 aa2.99□□□□□ -1.93
VPS13A-208ENST00000423463 HSPA6P17066 643 aa2.99□□□□□ -1.93
VPS13A-208ENST00000423463 XPAP23025 273 aaPredicted RBP2.99□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms