RNA–Protein interactions for RNA: ENST00000419974.2

SHMT1P1-201, Transcript of serine hydroxymethyltransferase 1 (soluble) pseudogene 1, humanhuman

BASIC

Gene SHMT1P1, Length 1,312 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1P1-201ENST00000419974 ZNF689Q96CS4 500 aaPredicted RBP15.21■□□□□ 0.03
SHMT1P1-201ENST00000419974 CALR3Q96L12 384 aaKnown RBP15.21■□□□□ 0.03
SHMT1P1-201ENST00000419974 ZNF518BQ9C0D4 1074 aa15.21■□□□□ 0.03
SHMT1P1-201ENST00000419974 LHX5Q9H2C1 402 aa15.21■□□□□ 0.03
SHMT1P1-201ENST00000419974 RC3H2Q9HBD1 1191 aaKnown RBP15.21■□□□□ 0.03
SHMT1P1-201ENST00000419974 DSEQ9UL01 958 aa15.21■□□□□ 0.03
SHMT1P1-201ENST00000419974 LRFN2Q9ULH4 789 aa15.21■□□□□ 0.03
SHMT1P1-201ENST00000419974 POLIQ9UNA4 740 aa15.21■□□□□ 0.03
SHMT1P1-201ENST00000419974 PCDHA13Q9Y5I0 950 aa15.21■□□□□ 0.03
SHMT1P1-201ENST00000419974 SNX9Q9Y5X1 595 aa15.21■□□□□ 0.03
SHMT1P1-201ENST00000419974 LSM8O95777 96 aaKnown RBP15.2■□□□□ 0.02
SHMT1P1-201ENST00000419974 POMCP01189 267 aa15.2■□□□□ 0.02
SHMT1P1-201ENST00000419974 CYP1A1P04798 512 aaPredicted RBP15.2■□□□□ 0.02
SHMT1P1-201ENST00000419974 KRT5P13647 590 aa15.2■□□□□ 0.02
SHMT1P1-201ENST00000419974 CSF2RAP15509 400 aa15.2■□□□□ 0.02
SHMT1P1-201ENST00000419974 TYMPP19971 482 aa15.2■□□□□ 0.02
SHMT1P1-201ENST00000419974 TNFAIP3P21580 790 aa15.2■□□□□ 0.02
SHMT1P1-201ENST00000419974 GNA15P30679 374 aa15.2■□□□□ 0.02
SHMT1P1-201ENST00000419974 CDH5P33151 784 aaPredicted RBP15.2■□□□□ 0.02
SHMT1P1-201ENST00000419974 RAD23BP54727 409 aa15.2■□□□□ 0.02
SHMT1P1-201ENST00000419974 SMAD3P84022 425 aaKnown RBP15.2■□□□□ 0.02
SHMT1P1-201ENST00000419974 FMO1Q01740 532 aa15.2■□□□□ 0.02
SHMT1P1-201ENST00000419974 DEFB128Q7Z7B8 93 aa15.2■□□□□ 0.02
SHMT1P1-201ENST00000419974 RNF169Q8NCN4 708 aa15.2■□□□□ 0.02
SHMT1P1-201ENST00000419974 APPL2Q8NEU8 664 aa15.2■□□□□ 0.02
SHMT1P1-201ENST00000419974 LNX1Q8TBB1 728 aaPredicted RBP15.2■□□□□ 0.02
SHMT1P1-201ENST00000419974 ZNF606Q8WXB4 792 aa15.2■□□□□ 0.02
SHMT1P1-201ENST00000419974 TMEM176AQ96HP8 235 aa15.2■□□□□ 0.02
SHMT1P1-201ENST00000419974 NT5C1AQ9BXI3 368 aa15.2■□□□□ 0.02
SHMT1P1-201ENST00000419974 TSGA10Q9BZW7 698 aa15.2■□□□□ 0.02
SHMT1P1-201ENST00000419974 SMYD3Q9H7B4 428 aa15.2■□□□□ 0.02
SHMT1P1-201ENST00000419974 GOLGA2P5Q9HBQ8 144 aa15.2■□□□□ 0.02
SHMT1P1-201ENST00000419974 MYO1AQ9UBC5 1043 aa15.2■□□□□ 0.02
SHMT1P1-201ENST00000419974 TULP1O00294 542 aaPredicted RBP15.19■□□□□ 0.02
SHMT1P1-201ENST00000419974 MED7O43513 233 aa15.19■□□□□ 0.02
SHMT1P1-201ENST00000419974 HUS1O60921 280 aa15.19■□□□□ 0.02
SHMT1P1-201ENST00000419974 AMHP03971 560 aa15.19■□□□□ 0.02
SHMT1P1-201ENST00000419974 FGFR1P11362 822 aa15.19■□□□□ 0.02
SHMT1P1-201ENST00000419974 VDRP11473 427 aa15.19■□□□□ 0.02
SHMT1P1-201ENST00000419974 UNGP13051 313 aaPredicted RBP15.19■□□□□ 0.02
SHMT1P1-201ENST00000419974 LHX1P48742 406 aa15.19■□□□□ 0.02
SHMT1P1-201ENST00000419974 EPHB4P54760 987 aa15.19■□□□□ 0.02
SHMT1P1-201ENST00000419974 GFPT1Q06210 699 aaPredicted RBP15.19■□□□□ 0.02
SHMT1P1-201ENST00000419974 CNGA2Q16280 664 aa15.19■□□□□ 0.02
SHMT1P1-201ENST00000419974 NYAP1Q6ZVC0 841 aa15.19■□□□□ 0.02
SHMT1P1-201ENST00000419974 GLYCTKQ8IVS8 523 aa15.19■□□□□ 0.02
SHMT1P1-201ENST00000419974 LRRC43Q8N309 656 aa15.19■□□□□ 0.02
SHMT1P1-201ENST00000419974 SLC4A11Q8NBS3 891 aa15.19■□□□□ 0.02
SHMT1P1-201ENST00000419974 C3orf58Q8NDZ4 430 aa15.19■□□□□ 0.02
SHMT1P1-201ENST00000419974 UBE2Q2Q8WVN8 375 aa15.19■□□□□ 0.02
SHMT1P1-201ENST00000419974 KBTBD7Q8WVZ9 684 aa15.19■□□□□ 0.02
SHMT1P1-201ENST00000419974 VCPIP1Q96JH7 1222 aa15.19■□□□□ 0.02
SHMT1P1-201ENST00000419974 PPP1R13BQ96KQ4 1090 aa15.19■□□□□ 0.02
SHMT1P1-201ENST00000419974 SUSD3Q96L08 255 aa15.19■□□□□ 0.02
SHMT1P1-201ENST00000419974 UTP3Q9NQZ2 479 aaKnown RBP eCLIP15.19■□□□□ 0.02
SHMT1P1-201ENST00000419974 MTMR10Q9NXD2 777 aa15.19■□□□□ 0.02
SHMT1P1-201ENST00000419974 L1RE1Q9UN81 338 aa15.19■□□□□ 0.02
SHMT1P1-201ENST00000419974 STXBP5LQ9Y2K9 1186 aa15.19■□□□□ 0.02
SHMT1P1-201ENST00000419974 A0A0A6YYK5 440 aaPredicted RBP15.18■□□□□ 0.02
SHMT1P1-201ENST00000419974 KIF2AO00139 706 aaPredicted RBP15.18■□□□□ 0.02
SHMT1P1-201ENST00000419974 CYB561D2O14569 222 aa15.18■□□□□ 0.02
SHMT1P1-201ENST00000419974 RTN2O75298 545 aa15.18■□□□□ 0.02
SHMT1P1-201ENST00000419974 B3GAT3O94766 335 aa15.18■□□□□ 0.02
SHMT1P1-201ENST00000419974 DDHD2O94830 711 aa15.18■□□□□ 0.02
SHMT1P1-201ENST00000419974 EFEMP2O95967 443 aa15.18■□□□□ 0.02
SHMT1P1-201ENST00000419974 USP8P40818 1118 aa15.18■□□□□ 0.02
SHMT1P1-201ENST00000419974 MAGEA1P43355 309 aa15.18■□□□□ 0.02
SHMT1P1-201ENST00000419974 CDH8P55286 799 aa15.18■□□□□ 0.02
SHMT1P1-201ENST00000419974 WDR5P61964 334 aaKnown RBP15.18■□□□□ 0.02
SHMT1P1-201ENST00000419974 ARHGAP17Q68EM7 881 aa15.18■□□□□ 0.02
SHMT1P1-201ENST00000419974 LIN28BQ6ZN17 250 aaKnown RBP eCLIP15.18■□□□□ 0.02
SHMT1P1-201ENST00000419974 PDCL2Q8N4E4 241 aa15.18■□□□□ 0.02
SHMT1P1-201ENST00000419974 RNF10Q8N5U6 811 aaKnown RBP15.18■□□□□ 0.02
SHMT1P1-201ENST00000419974 ELMO3Q96BJ8 720 aa15.18■□□□□ 0.02
SHMT1P1-201ENST00000419974 TNIP3Q96KP6 325 aa15.18■□□□□ 0.02
SHMT1P1-201ENST00000419974 SENP8Q96LD8 212 aa15.18■□□□□ 0.02
SHMT1P1-201ENST00000419974 MMS19Q96T76 1030 aa15.18■□□□□ 0.02
SHMT1P1-201ENST00000419974 ELOVL4Q9GZR5 314 aa15.18■□□□□ 0.02
SHMT1P1-201ENST00000419974 TET1Q8NFU7 2136 aa15.18■□□□□ 0.02
SHMT1P1-201ENST00000419974 COL6A3P12111 3177 aa15.18■□□□□ 0.02
SHMT1P1-201ENST00000419974 TRIP11Q15643 1979 aa15.18■□□□□ 0.02
SHMT1P1-201ENST00000419974 ANKRD62A6NC57 917 aa15.17■□□□□ 0.02
SHMT1P1-201ENST00000419974 TRAPPC3O43617 180 aa15.17■□□□□ 0.02
SHMT1P1-201ENST00000419974 KRT86O43790 486 aa15.17■□□□□ 0.02
SHMT1P1-201ENST00000419974 ALDH2P05091 517 aa15.17■□□□□ 0.02
SHMT1P1-201ENST00000419974 CD58P19256 250 aa15.17■□□□□ 0.02
SHMT1P1-201ENST00000419974 GNL1P36915 607 aaPredicted RBP15.17■□□□□ 0.02
SHMT1P1-201ENST00000419974 ARHGAP25P42331 645 aa15.17■□□□□ 0.02
SHMT1P1-201ENST00000419974 NDST1P52848 882 aa15.17■□□□□ 0.02
SHMT1P1-201ENST00000419974 CENPCQ03188 943 aa15.17■□□□□ 0.02
SHMT1P1-201ENST00000419974 CLEC16AQ2KHT3 1053 aa15.17■□□□□ 0.02
SHMT1P1-201ENST00000419974 PSRC1Q6PGN9 363 aaPredicted RBP15.17■□□□□ 0.02
SHMT1P1-201ENST00000419974 LCLAT1Q6UWP7 414 aa15.17■□□□□ 0.02
SHMT1P1-201ENST00000419974 C16orf59Q7L2K0 433 aa15.17■□□□□ 0.02
SHMT1P1-201ENST00000419974 ZNF280BQ86YH2 543 aa15.17■□□□□ 0.02
SHMT1P1-201ENST00000419974 CMTR2Q8IYT2 770 aaKnown RBP15.17■□□□□ 0.02
SHMT1P1-201ENST00000419974 TMEM130Q8N3G9 435 aa15.17■□□□□ 0.02
SHMT1P1-201ENST00000419974 ACRBPQ8NEB7 543 aa15.17■□□□□ 0.02
SHMT1P1-201ENST00000419974 PHOSPHO2Q8TCD6 241 aa15.17■□□□□ 0.02
SHMT1P1-201ENST00000419974 SLC20A1Q8WUM9 679 aa15.17■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms