RNA–Protein interactions for RNA: ENST00000413872.6

PHRF1-202, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PHRF1, Length 5,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-202ENST00000413872 CDR2Q01850 454 aa18.09■□□□□ 0.49
PHRF1-202ENST00000413872 LBRQ14739 615 aaKnown RBP18.09■□□□□ 0.49
PHRF1-202ENST00000413872 NTRK3Q16288 839 aa18.09■□□□□ 0.49
PHRF1-202ENST00000413872 KIZQ2M2Z5 673 aa18.09■□□□□ 0.49
PHRF1-202ENST00000413872 NAPEPLDQ6IQ20 393 aa18.09■□□□□ 0.49
PHRF1-202ENST00000413872 TRIM65Q6PJ69 517 aa18.09■□□□□ 0.49
PHRF1-202ENST00000413872 SPATA18Q8TC71 538 aa18.09■□□□□ 0.49
PHRF1-202ENST00000413872 NCLNQ969V3 563 aa18.09■□□□□ 0.49
PHRF1-202ENST00000413872 CCDC138Q96M89 665 aa18.09■□□□□ 0.49
PHRF1-202ENST00000413872 E2F5Q15329 346 aa18.09■□□□□ 0.49
PHRF1-202ENST00000413872 NFE2Q16621 373 aaPredicted RBP18.09■□□□□ 0.49
PHRF1-202ENST00000413872 ZNF720Q7Z2F6 126 aa18.09■□□□□ 0.49
PHRF1-202ENST00000413872 RBM15Q96T37 977 aaKnown RBP eCLIP18.09■□□□□ 0.493e-8■■■■□ 26.2
PHRF1-202ENST00000413872 RRAGCQ9HB90 399 aa18.09■□□□□ 0.49
PHRF1-202ENST00000413872 METTL5Q9NRN9 209 aaKnown RBP18.09■□□□□ 0.49
PHRF1-202ENST00000413872 CDH16O75309 829 aa18.09■□□□□ 0.49
PHRF1-202ENST00000413872 GRAP2O75791 330 aa18.09■□□□□ 0.49
PHRF1-202ENST00000413872 AP1G2O75843 785 aa18.09■□□□□ 0.49
PHRF1-202ENST00000413872 ARFIP2P53365 341 aa18.09■□□□□ 0.49
PHRF1-202ENST00000413872 SYTL3Q4VX76 610 aa18.09■□□□□ 0.49
PHRF1-202ENST00000413872 COG1Q8WTW3 980 aa18.09■□□□□ 0.49
PHRF1-202ENST00000413872 AGAP3Q96P47 875 aa18.09■□□□□ 0.49
PHRF1-202ENST00000413872 USP27XA6NNY8 438 aa18.08■□□□□ 0.49
PHRF1-202ENST00000413872 HAUS5O94927 633 aa18.08■□□□□ 0.49
PHRF1-202ENST00000413872 URODP06132 367 aa18.08■□□□□ 0.49
PHRF1-202ENST00000413872 SFSWAPQ12872 951 aaKnown RBP18.08■□□□□ 0.49
PHRF1-202ENST00000413872 FIGNQ5HY92 759 aa18.08■□□□□ 0.49
PHRF1-202ENST00000413872 CYP4A22Q5TCH4 519 aa18.08■□□□□ 0.49
PHRF1-202ENST00000413872 CBWD2Q8IUF1 395 aa18.08■□□□□ 0.49
PHRF1-202ENST00000413872 MRPS31Q92665 395 aaKnown RBP18.08■□□□□ 0.49
PHRF1-202ENST00000413872 SLC13A1Q9BZW2 595 aa18.08■□□□□ 0.49
PHRF1-202ENST00000413872 KLK14Q9P0G3 267 aa18.08■□□□□ 0.49
PHRF1-202ENST00000413872 PLAGL2Q9UPG8 496 aa18.08■□□□□ 0.49
PHRF1-202ENST00000413872 HPSEQ9Y251 543 aa18.08■□□□□ 0.49
PHRF1-202ENST00000413872 ZMYM2Q9UBW7 1377 aa18.08■□□□□ 0.49
PHRF1-202ENST00000413872 GYG2O15488 501 aa18.08■□□□□ 0.49
PHRF1-202ENST00000413872 PHEXP78562 749 aa18.08■□□□□ 0.49
PHRF1-202ENST00000413872 CCZ1BP86790 482 aa18.08■□□□□ 0.49
PHRF1-202ENST00000413872 CCZ1P86791 482 aaPredicted RBP18.08■□□□□ 0.49
PHRF1-202ENST00000413872 PDCLQ13371 301 aa18.08■□□□□ 0.49
PHRF1-202ENST00000413872 TAF11Q15544 211 aa18.08■□□□□ 0.49
PHRF1-202ENST00000413872 MFN1Q8IWA4 741 aa18.08■□□□□ 0.49
PHRF1-202ENST00000413872 WDR24Q96S15 920 aa18.08■□□□□ 0.49
PHRF1-202ENST00000413872 ARHGEF38Q9NXL2 777 aa18.08■□□□□ 0.49
PHRF1-202ENST00000413872 GAKO14976 1311 aa18.08■□□□□ 0.48
PHRF1-202ENST00000413872 CCDC22O60826 627 aa18.08■□□□□ 0.48
PHRF1-202ENST00000413872 PYGLP06737 847 aa18.08■□□□□ 0.48
PHRF1-202ENST00000413872 RBP3P10745 1247 aa18.08■□□□□ 0.48
PHRF1-202ENST00000413872 MCF2P10911 925 aa18.08■□□□□ 0.48
PHRF1-202ENST00000413872 BCAT1P54687 386 aa18.08■□□□□ 0.48
PHRF1-202ENST00000413872 ZFP69BQ9UJL9 534 aa18.08■□□□□ 0.48
PHRF1-202ENST00000413872 PCDHGB4Q9UN71 923 aa18.08■□□□□ 0.48
PHRF1-202ENST00000413872 RSPH10B2B2RC85 870 aa18.08■□□□□ 0.48
PHRF1-202ENST00000413872 CST8O60676 142 aa18.08■□□□□ 0.48
PHRF1-202ENST00000413872 AGTP01019 485 aa18.08■□□□□ 0.48
PHRF1-202ENST00000413872 RSPH10BP0C881 870 aa18.08■□□□□ 0.48
PHRF1-202ENST00000413872 PDAP1Q13442 181 aaKnown RBP18.08■□□□□ 0.48
PHRF1-202ENST00000413872 HABP4Q5JVS0 413 aaKnown RBP18.08■□□□□ 0.48
PHRF1-202ENST00000413872 LINC00523Q86TU6 105 aa18.08■□□□□ 0.48
PHRF1-202ENST00000413872 PTPRN2Q92932 1015 aa18.08■□□□□ 0.48
PHRF1-202ENST00000413872 ASCC2Q9H1I8 757 aaPredicted RBP18.08■□□□□ 0.48
PHRF1-202ENST00000413872 CDKN2AIPQ9NXV6 580 aaPredicted RBP18.08■□□□□ 0.48
PHRF1-202ENST00000413872 AFF4Q9UHB7 1163 aaKnown RBP18.08■□□□□ 0.48
PHRF1-202ENST00000413872 CYB561D2O14569 222 aa18.07■□□□□ 0.48
PHRF1-202ENST00000413872 GFAPP14136 432 aa18.07■□□□□ 0.48
PHRF1-202ENST00000413872 ALDH5A1P51649 535 aaPredicted RBP18.07■□□□□ 0.48
PHRF1-202ENST00000413872 PPIL2Q13356 520 aa18.07■□□□□ 0.48
PHRF1-202ENST00000413872 C1orf131Q8NDD1 294 aaKnown RBP18.07■□□□□ 0.48
PHRF1-202ENST00000413872 AKT1S1Q96B36 256 aa18.07■□□□□ 0.48
PHRF1-202ENST00000413872 KDM4CQ9H3R0 1056 aa18.07■□□□□ 0.48
PHRF1-202ENST00000413872 GMNCA6NCL1 334 aa18.07■□□□□ 0.48
PHRF1-202ENST00000413872 PSTPIP1O43586 416 aa18.07■□□□□ 0.48
PHRF1-202ENST00000413872 TLR2O60603 784 aa18.07■□□□□ 0.48
PHRF1-202ENST00000413872 ANXA9O76027 345 aa18.07■□□□□ 0.48
PHRF1-202ENST00000413872 AXLP30530 894 aa18.07■□□□□ 0.48
PHRF1-202ENST00000413872 AKT1P31749 480 aa18.07■□□□□ 0.48
PHRF1-202ENST00000413872 RFC1P35251 1148 aaPredicted RBP18.07■□□□□ 0.48
PHRF1-202ENST00000413872 EFTUD2Q15029 972 aaKnown RBP eCLIP18.07■□□□□ 0.482e-6■■■■□ 25.9
PHRF1-202ENST00000413872 MEI1Q5TIA1 1274 aa18.07■□□□□ 0.48
PHRF1-202ENST00000413872 KRT80Q6KB66 452 aa18.07■□□□□ 0.48
PHRF1-202ENST00000413872 CDR2LQ86X02 465 aaPredicted RBP18.07■□□□□ 0.48
PHRF1-202ENST00000413872 CLMNQ96JQ2 1002 aa18.07■□□□□ 0.48
PHRF1-202ENST00000413872 MTMR12Q9C0I1 747 aa18.07■□□□□ 0.48
PHRF1-202ENST00000413872 CARD9Q9H257 536 aa18.07■□□□□ 0.48
PHRF1-202ENST00000413872 MRGBPQ9NV56 204 aa18.07■□□□□ 0.48
PHRF1-202ENST00000413872 XPO7Q9UIA9 1087 aaKnown RBP18.07■□□□□ 0.48
PHRF1-202ENST00000413872 VPS9D1Q9Y2B5 631 aa18.07■□□□□ 0.48
PHRF1-202ENST00000413872 RRP15Q9Y3B9 282 aaKnown RBP18.07■□□□□ 0.48
PHRF1-202ENST00000413872 IRF1P10914 325 aa18.07■□□□□ 0.48
PHRF1-202ENST00000413872 STMN1P16949 149 aa18.07■□□□□ 0.48
PHRF1-202ENST00000413872 RGS4P49798 205 aa18.07■□□□□ 0.48
PHRF1-202ENST00000413872 ZNF280DQ6N043 979 aa18.07■□□□□ 0.48
PHRF1-202ENST00000413872 RNF135Q8IUD6 432 aa18.07■□□□□ 0.48
PHRF1-202ENST00000413872 SPIRE2Q8WWL2 714 aa18.07■□□□□ 0.48
PHRF1-202ENST00000413872 CDCA5Q96FF9 252 aa18.07■□□□□ 0.48
PHRF1-202ENST00000413872 TGS1Q96RS0 853 aaKnown RBP18.07■□□□□ 0.48
PHRF1-202ENST00000413872 GLIS2Q9BZE0 524 aaPredicted RBP18.07■□□□□ 0.48
PHRF1-202ENST00000413872 NEU2Q9Y3R4 380 aa18.07■□□□□ 0.48
PHRF1-202ENST00000413872 DIAPH2O60879 1101 aa18.07■□□□□ 0.48
PHRF1-202ENST00000413872 STIP1P31948 543 aaKnown RBP18.07■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms