RNA–Protein interactions for RNA: ENST00000413141.5

VPS41-204, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 575 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-204ENST00000413141 CNKSR3Q6P9H4 555 aa7.09□□□□□ -1.27
VPS41-204ENST00000413141 TRIM72Q6ZMU5 477 aa7.09□□□□□ -1.27
VPS41-204ENST00000413141 LIMS2Q7Z4I7 341 aa7.09□□□□□ -1.27
VPS41-204ENST00000413141 DEFB128Q7Z7B8 93 aa7.09□□□□□ -1.27
VPS41-204ENST00000413141 DNAAF5Q86Y56 855 aa7.09□□□□□ -1.27
VPS41-204ENST00000413141 TOP6BLQ8N6T0 577 aa7.09□□□□□ -1.27
VPS41-204ENST00000413141 SLC4A11Q8NBS3 891 aa7.09□□□□□ -1.27
VPS41-204ENST00000413141 C3orf58Q8NDZ4 430 aa7.09□□□□□ -1.27
VPS41-204ENST00000413141 URGCPQ8TCY9 931 aa7.09□□□□□ -1.27
VPS41-204ENST00000413141 KBTBD7Q8WVZ9 684 aa7.09□□□□□ -1.27
VPS41-204ENST00000413141 SECISBP2LQ93073 1101 aaKnown RBP7.09□□□□□ -1.27
VPS41-204ENST00000413141 VWCEQ96DN2 955 aa7.09□□□□□ -1.27
VPS41-204ENST00000413141 UROC1Q96N76 676 aa7.09□□□□□ -1.27
VPS41-204ENST00000413141 ZSWIM1Q9BR11 485 aa7.09□□□□□ -1.27
VPS41-204ENST00000413141 MRPL45Q9BRJ2 306 aaKnown RBP7.09□□□□□ -1.27
VPS41-204ENST00000413141 IRX2Q9BZI1 471 aaPredicted RBP7.09□□□□□ -1.27
VPS41-204ENST00000413141 ELOVL4Q9GZR5 314 aa7.09□□□□□ -1.27
VPS41-204ENST00000413141 ISCUQ9H1K1 167 aa7.09□□□□□ -1.27
VPS41-204ENST00000413141 PRDM5Q9NQX1 630 aaPredicted RBP7.09□□□□□ -1.27
VPS41-204ENST00000413141 MYO1AQ9UBC5 1043 aa7.09□□□□□ -1.27
VPS41-204ENST00000413141 INTUQ9ULD6 942 aa7.09□□□□□ -1.27
VPS41-204ENST00000413141 BARX2Q9UMQ3 279 aaPredicted RBP7.09□□□□□ -1.27
VPS41-204ENST00000413141 GUCA1BQ9UMX6 200 aa7.09□□□□□ -1.27
VPS41-204ENST00000413141 L1RE1Q9UN81 338 aa7.09□□□□□ -1.27
VPS41-204ENST00000413141 FARP1Q9Y4F1 1045 aaPredicted RBP7.09□□□□□ -1.27
VPS41-204ENST00000413141 CAPN6Q9Y6Q1 641 aa7.09□□□□□ -1.27
VPS41-204ENST00000413141 DUSP10Q9Y6W6 482 aa7.09□□□□□ -1.27
VPS41-204ENST00000413141 ALPK3Q96L96 1907 aa7.09□□□□□ -1.27
VPS41-204ENST00000413141 FAM170AA1A519 330 aa7.08□□□□□ -1.28
VPS41-204ENST00000413141 MACROD2A1Z1Q3 448 aa7.08□□□□□ -1.28
VPS41-204ENST00000413141 ANKRD62A6NC57 917 aa7.08□□□□□ -1.28
VPS41-204ENST00000413141 TRIM43BA6NCK2 446 aa7.08□□□□□ -1.28
VPS41-204ENST00000413141 TMCO5BA8MYB1 307 aa7.08□□□□□ -1.28
VPS41-204ENST00000413141 KIAA0355O15063 1070 aa7.08□□□□□ -1.28
VPS41-204ENST00000413141 MED7O43513 233 aa7.08□□□□□ -1.28
VPS41-204ENST00000413141 B4GALT3O60512 393 aa7.08□□□□□ -1.28
VPS41-204ENST00000413141 RTN2O75298 545 aa7.08□□□□□ -1.28
VPS41-204ENST00000413141 LSM8O95777 96 aaKnown RBP7.08□□□□□ -1.28
VPS41-204ENST00000413141 TIMP1P01033 207 aa7.08□□□□□ -1.28
VPS41-204ENST00000413141 CYP1A1P04798 512 aaPredicted RBP7.08□□□□□ -1.28
VPS41-204ENST00000413141 CFHP08603 1231 aa7.08□□□□□ -1.28
VPS41-204ENST00000413141 H2AFZP0C0S5 128 aa7.08□□□□□ -1.28
VPS41-204ENST00000413141 UNGP13051 313 aaPredicted RBP7.08□□□□□ -1.28
VPS41-204ENST00000413141 CD19P15391 556 aa7.08□□□□□ -1.28
VPS41-204ENST00000413141 ABCB4P21439 1286 aa7.08□□□□□ -1.28
VPS41-204ENST00000413141 WARSP23381 471 aaKnown RBP7.08□□□□□ -1.28
VPS41-204ENST00000413141 IGFBP6P24592 240 aaPredicted RBP7.08□□□□□ -1.28
VPS41-204ENST00000413141 ITGB8P26012 769 aa7.08□□□□□ -1.28
VPS41-204ENST00000413141 GALCP54803 685 aa7.08□□□□□ -1.28
VPS41-204ENST00000413141 GNG11P61952 73 aa7.08□□□□□ -1.28
VPS41-204ENST00000413141 NOMO3P69849 1222 aa7.08□□□□□ -1.28
VPS41-204ENST00000413141 DSC1Q08554 894 aa7.08□□□□□ -1.28
VPS41-204ENST00000413141 NOMO2Q5JPE7 1267 aa7.08□□□□□ -1.28
VPS41-204ENST00000413141 NAA35Q5VZE5 725 aa7.08□□□□□ -1.28
VPS41-204ENST00000413141 SYT10Q6XYQ8 523 aa7.08□□□□□ -1.28
VPS41-204ENST00000413141 PDZRN4Q6ZMN7 1036 aaPredicted RBP7.08□□□□□ -1.28
VPS41-204ENST00000413141 H2AFVQ71UI9 128 aa7.08□□□□□ -1.28
VPS41-204ENST00000413141 DPH6Q7L8W6 267 aa7.08□□□□□ -1.28
VPS41-204ENST00000413141 UNC93AQ86WB7 457 aa7.08□□□□□ -1.28
VPS41-204ENST00000413141 NPAS4Q8IUM7 802 aa7.08□□□□□ -1.28
VPS41-204ENST00000413141 PASD1Q8IV76 773 aa7.08□□□□□ -1.28
VPS41-204ENST00000413141 ADGRF2Q8IZF7 708 aa7.08□□□□□ -1.28
VPS41-204ENST00000413141 CRIPAKQ8N1N5 446 aa7.08□□□□□ -1.28
VPS41-204ENST00000413141 SLC35F6Q8N357 371 aa7.08□□□□□ -1.28
VPS41-204ENST00000413141 PDCL2Q8N4E4 241 aa7.08□□□□□ -1.28
VPS41-204ENST00000413141 APPL2Q8NEU8 664 aa7.08□□□□□ -1.28
VPS41-204ENST00000413141 ZNF606Q8WXB4 792 aa7.08□□□□□ -1.28
VPS41-204ENST00000413141 CTNNBL1Q8WYA6 563 aaPredicted RBP7.08□□□□□ -1.28
VPS41-204ENST00000413141 TFAP2BQ92481 460 aa7.08□□□□□ -1.28
VPS41-204ENST00000413141 TRIM43Q96BQ3 446 aaPredicted RBP7.08□□□□□ -1.28
VPS41-204ENST00000413141 DDX27Q96GQ7 796 aaKnown RBP7.08□□□□□ -1.28
VPS41-204ENST00000413141 TMEM176AQ96HP8 235 aa7.08□□□□□ -1.28
VPS41-204ENST00000413141 WDR24Q96S15 920 aa7.08□□□□□ -1.28
VPS41-204ENST00000413141 PAAF1Q9BRP4 392 aa7.08□□□□□ -1.28
VPS41-204ENST00000413141 NT5C1AQ9BXI3 368 aa7.08□□□□□ -1.28
VPS41-204ENST00000413141 THAP2Q9H0W7 228 aa7.08□□□□□ -1.28
VPS41-204ENST00000413141 TBC1D13Q9NVG8 400 aa7.08□□□□□ -1.28
VPS41-204ENST00000413141 PUF60Q9UHX1 559 aaKnown RBP7.08□□□□□ -1.28
VPS41-204ENST00000413141 DNAI1Q9UI46 699 aa7.08□□□□□ -1.28
VPS41-204ENST00000413141 SALL4Q9UJQ4 1053 aa7.08□□□□□ -1.28
VPS41-204ENST00000413141 PCDHGC3Q9UN70 934 aa7.08□□□□□ -1.28
VPS41-204ENST00000413141 WDR3Q9UNX4 943 aaKnown RBP eCLIP7.08□□□□□ -1.28
VPS41-204ENST00000413141 NME7Q9Y5B8 376 aa7.08□□□□□ -1.28
VPS41-204ENST00000413141 PCDHB7Q9Y5E2 793 aa7.08□□□□□ -1.28
VPS41-204ENST00000413141 TET1Q8NFU7 2136 aa7.07□□□□□ -1.28
VPS41-204ENST00000413141 A0A0A6YYK5 440 aaPredicted RBP7.07□□□□□ -1.28
VPS41-204ENST00000413141 TMEM189-UBE2V1I3L0A0 370 aa7.07□□□□□ -1.28
VPS41-204ENST00000413141 O00370 1275 aa7.07□□□□□ -1.28
VPS41-204ENST00000413141 CYB561D2O14569 222 aa7.07□□□□□ -1.28
VPS41-204ENST00000413141 HOXA2O43364 376 aa7.07□□□□□ -1.28
VPS41-204ENST00000413141 HCRTO43612 131 aa7.07□□□□□ -1.28
VPS41-204ENST00000413141 HUS1O60921 280 aa7.07□□□□□ -1.28
VPS41-204ENST00000413141 DDHD2O94830 711 aa7.07□□□□□ -1.28
VPS41-204ENST00000413141 KIF4AO95239 1232 aa7.07□□□□□ -1.28
VPS41-204ENST00000413141 MOCS3O95396 460 aa7.07□□□□□ -1.28
VPS41-204ENST00000413141 FTLP02792 175 aaPredicted RBP7.07□□□□□ -1.28
VPS41-204ENST00000413141 VDRP11473 427 aa7.07□□□□□ -1.28
VPS41-204ENST00000413141 CSF2RAP15509 400 aa7.07□□□□□ -1.28
VPS41-204ENST00000413141 RAG1P15918 1043 aa7.07□□□□□ -1.28
VPS41-204ENST00000413141 EN2P19622 333 aaPredicted RBP7.07□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms