RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 SLC39A12Q504Y0 691 aa20.54■□□□□ 0.88
SF3A1-202ENST00000411423 CWF19L1Q69YN2 538 aaKnown RBP20.54■□□□□ 0.88
SF3A1-202ENST00000411423 OSTM1Q86WC4 334 aa20.54■□□□□ 0.88
SF3A1-202ENST00000411423 PDCL2Q8N4E4 241 aa20.54■□□□□ 0.88
SF3A1-202ENST00000411423 PRSS33Q8NF86 280 aa20.54■□□□□ 0.88
SF3A1-202ENST00000411423 CACTINQ8WUQ7 758 aaKnown RBP20.54■□□□□ 0.88
SF3A1-202ENST00000411423 ZNF516Q92618 1163 aa20.54■□□□□ 0.88
SF3A1-202ENST00000411423 ZNF560Q96MR9 790 aa20.54■□□□□ 0.88
SF3A1-202ENST00000411423 USP25Q9UHP3 1055 aa20.54■□□□□ 0.88
SF3A1-202ENST00000411423 ITGA11Q9UKX5 1188 aa20.54■□□□□ 0.88
SF3A1-202ENST00000411423 MAFFQ9ULX9 164 aa20.54■□□□□ 0.88
SF3A1-202ENST00000411423 ATP6V1DQ9Y5K8 247 aa20.54■□□□□ 0.88
SF3A1-202ENST00000411423 KRBA1A5PL33 1030 aa20.53■□□□□ 0.88
SF3A1-202ENST00000411423 RPN1P04843 607 aaKnown RBP20.53■□□□□ 0.88
SF3A1-202ENST00000411423 KRT19P08727 400 aa20.53■□□□□ 0.88
SF3A1-202ENST00000411423 TMEM191BP0C7N4 346 aa20.53■□□□□ 0.88
SF3A1-202ENST00000411423 AVPR2P30518 371 aa20.53■□□□□ 0.88
SF3A1-202ENST00000411423 CYP24A1Q07973 514 aa20.53■□□□□ 0.88
SF3A1-202ENST00000411423 DPYDQ12882 1025 aa20.53■□□□□ 0.88
SF3A1-202ENST00000411423 KRBA2Q6ZNG9 492 aa20.53■□□□□ 0.88
SF3A1-202ENST00000411423 TMC8Q8IU68 726 aa20.53■□□□□ 0.88
SF3A1-202ENST00000411423 C12orf56Q8IXR9 622 aa20.53■□□□□ 0.88
SF3A1-202ENST00000411423 LRRC52Q8N7C0 313 aa20.53■□□□□ 0.88
SF3A1-202ENST00000411423 TMEM105Q8N8V8 129 aa20.53■□□□□ 0.88
SF3A1-202ENST00000411423 XXYLT1Q8NBI6 393 aa20.53■□□□□ 0.88
SF3A1-202ENST00000411423 PLA2G2FQ9BZM2 168 aa20.53■□□□□ 0.88
SF3A1-202ENST00000411423 KCTD10Q9H3F6 313 aa20.53■□□□□ 0.88
SF3A1-202ENST00000411423 EXOC1Q9NV70 894 aa20.53■□□□□ 0.88
SF3A1-202ENST00000411423 DSEQ9UL01 958 aa20.53■□□□□ 0.88
SF3A1-202ENST00000411423 ARIH1Q9Y4X5 557 aaPredicted RBP20.53■□□□□ 0.88
SF3A1-202ENST00000411423 ZFP37Q9Y6Q3 630 aaPredicted RBP20.53■□□□□ 0.88
SF3A1-202ENST00000411423 CST3P01034 146 aaPredicted RBP20.52■□□□□ 0.88
SF3A1-202ENST00000411423 FCARP24071 287 aa20.52■□□□□ 0.88
SF3A1-202ENST00000411423 PNPLA4P41247 253 aa20.52■□□□□ 0.88
SF3A1-202ENST00000411423 CASP4P49662 377 aa20.52■□□□□ 0.88
SF3A1-202ENST00000411423 EPHA5P54756 1037 aa20.52■□□□□ 0.88
SF3A1-202ENST00000411423 RBP5P82980 135 aa20.52■□□□□ 0.88
SF3A1-202ENST00000411423 PSMD6Q15008 389 aa20.52■□□□□ 0.88
SF3A1-202ENST00000411423 WDR49Q8IV35 697 aa20.52■□□□□ 0.88
SF3A1-202ENST00000411423 SUGP1Q8IWZ8 645 aaKnown RBP20.52■□□□□ 0.88
SF3A1-202ENST00000411423 GPR152Q8TDT2 470 aa20.52■□□□□ 0.88
SF3A1-202ENST00000411423 NXPE3Q969Y0 559 aa20.52■□□□□ 0.88
SF3A1-202ENST00000411423 ANKRD36BP1Q96IX9 119 aa20.52■□□□□ 0.88
SF3A1-202ENST00000411423 ZSWIM3Q96MP5 696 aa20.52■□□□□ 0.88
SF3A1-202ENST00000411423 KXD1Q9BQD3 176 aa20.52■□□□□ 0.88
SF3A1-202ENST00000411423 KIAA1586Q9HCI6 787 aa20.52■□□□□ 0.88
SF3A1-202ENST00000411423 ZNF334Q9HCZ1 680 aaPredicted RBP20.52■□□□□ 0.88
SF3A1-202ENST00000411423 GDAP2Q9NXN4 497 aa20.52■□□□□ 0.88
SF3A1-202ENST00000411423 NCANO14594 1321 aa20.52■□□□□ 0.87
SF3A1-202ENST00000411423 ZNF202O95125 648 aa20.51■□□□□ 0.87
SF3A1-202ENST00000411423 DLATP10515 647 aaKnown RBP20.51■□□□□ 0.87
SF3A1-202ENST00000411423 SRFP11831 508 aa20.51■□□□□ 0.87
SF3A1-202ENST00000411423 ATF6P18850 670 aa20.51■□□□□ 0.87
SF3A1-202ENST00000411423 ACAT1P24752 427 aaKnown RBP20.51■□□□□ 0.87
SF3A1-202ENST00000411423 PLA2G5P39877 138 aa20.51■□□□□ 0.87
SF3A1-202ENST00000411423 SNRPFP62306 86 aaKnown RBP20.51■□□□□ 0.87
SF3A1-202ENST00000411423 GPC5P78333 572 aa20.51■□□□□ 0.87
SF3A1-202ENST00000411423 SOWAHAQ2M3V2 549 aa20.51■□□□□ 0.87
SF3A1-202ENST00000411423 TRAPPC11Q7Z392 1133 aa20.51■□□□□ 0.87
SF3A1-202ENST00000411423 LIMS2Q7Z4I7 341 aa20.51■□□□□ 0.87
SF3A1-202ENST00000411423 METTL23Q86XA0 190 aa20.51■□□□□ 0.87
SF3A1-202ENST00000411423 SIX5Q8N196 739 aa20.51■□□□□ 0.87
SF3A1-202ENST00000411423 SHKBP1Q8TBC3 707 aa20.51■□□□□ 0.87
SF3A1-202ENST00000411423 ZNF512Q96ME7 567 aaPredicted RBP20.51■□□□□ 0.87
SF3A1-202ENST00000411423 PKMYT1Q99640 499 aa20.51■□□□□ 0.87
SF3A1-202ENST00000411423 CGRRF1Q99675 332 aa20.51■□□□□ 0.87
SF3A1-202ENST00000411423 LPIN3Q9BQK8 851 aa20.51■□□□□ 0.87
SF3A1-202ENST00000411423 DMAC2Q9NW81 257 aa20.51■□□□□ 0.87
SF3A1-202ENST00000411423 CA14Q9ULX7 337 aa20.51■□□□□ 0.87
SF3A1-202ENST00000411423 SNX9Q9Y5X1 595 aa20.51■□□□□ 0.87
SF3A1-202ENST00000411423 PI15O43692 258 aa20.5■□□□□ 0.87
SF3A1-202ENST00000411423 MYL4P12829 197 aa20.5■□□□□ 0.87
SF3A1-202ENST00000411423 PSMD2Q13200 908 aa20.5■□□□□ 0.87
SF3A1-202ENST00000411423 DUOXA2Q1HG44 320 aa20.5■□□□□ 0.87
SF3A1-202ENST00000411423 TANGO2Q6ICL3 276 aa20.5■□□□□ 0.87
SF3A1-202ENST00000411423 PDZD4Q76G19 769 aaPredicted RBP20.5■□□□□ 0.87
SF3A1-202ENST00000411423 HS2ST1Q7LGA3 356 aa20.5■□□□□ 0.87
SF3A1-202ENST00000411423 KBTBD7Q8WVZ9 684 aa20.5■□□□□ 0.87
SF3A1-202ENST00000411423 CCDC127Q96BQ5 260 aa20.5■□□□□ 0.87
SF3A1-202ENST00000411423 NME7Q9Y5B8 376 aa20.5■□□□□ 0.87
SF3A1-202ENST00000411423 ZDBF2Q9HCK1 2354 aa20.49■□□□□ 0.87
SF3A1-202ENST00000411423 RHOBTB3O94955 611 aa20.49■□□□□ 0.87
SF3A1-202ENST00000411423 TNNC2P02585 160 aa20.49■□□□□ 0.87
SF3A1-202ENST00000411423 GPR15P49685 360 aa20.49■□□□□ 0.87
SF3A1-202ENST00000411423 TCF15Q12870 199 aa20.49■□□□□ 0.87
SF3A1-202ENST00000411423 SURF1Q15526 300 aa20.49■□□□□ 0.87
SF3A1-202ENST00000411423 TEAD2Q15562 447 aa20.49■□□□□ 0.87
SF3A1-202ENST00000411423 FAM78AQ5JUQ0 283 aa20.49■□□□□ 0.87
SF3A1-202ENST00000411423 STXBP5Q5T5C0 1151 aa20.49■□□□□ 0.87
SF3A1-202ENST00000411423 FMR1NBQ8N0W7 255 aaPredicted RBP20.49■□□□□ 0.87
SF3A1-202ENST00000411423 THEM5Q8N1Q8 247 aa20.49■□□□□ 0.87
SF3A1-202ENST00000411423 STKLD1Q8NE28 680 aa20.49■□□□□ 0.87
SF3A1-202ENST00000411423 FLCNQ8NFG4 579 aa20.49■□□□□ 0.87
SF3A1-202ENST00000411423 HPDLQ96IR7 371 aa20.49■□□□□ 0.87
SF3A1-202ENST00000411423 SEPT5Q99719 369 aaPredicted RBP20.49■□□□□ 0.87
SF3A1-202ENST00000411423 SLC2A4RGQ9NR83 387 aa20.49■□□□□ 0.87
SF3A1-202ENST00000411423 DDX43Q9NXZ2 648 aaKnown RBP20.49■□□□□ 0.87
SF3A1-202ENST00000411423 GDE1Q9NZC3 331 aa20.49■□□□□ 0.87
SF3A1-202ENST00000411423 WNT16Q9UBV4 365 aa20.49■□□□□ 0.87
SF3A1-202ENST00000411423 FBXL21Q9UKT6 434 aa20.49■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms