RNA–Protein interactions for RNA: ENST00000394269.7

TCOF1-203, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 3,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-203ENST00000394269 LOXHD1Q8IVV2 1947 aa11.81□□□□□ -0.52
TCOF1-203ENST00000394269 LRRD1A4D1F6 860 aa11.8□□□□□ -0.52
TCOF1-203ENST00000394269 ANKRD65E5RJM6 399 aa11.8□□□□□ -0.52
TCOF1-203ENST00000394269 PROSCO94903 275 aa11.8□□□□□ -0.52
TCOF1-203ENST00000394269 ECEL1O95672 775 aa11.8□□□□□ -0.52
TCOF1-203ENST00000394269 MMP3P08254 477 aa11.8□□□□□ -0.52
TCOF1-203ENST00000394269 MYZAPP0CAP1 466 aa11.8□□□□□ -0.52
TCOF1-203ENST00000394269 ADCY8P40145 1251 aa11.8□□□□□ -0.52
TCOF1-203ENST00000394269 ASPAP45381 313 aa11.8□□□□□ -0.52
TCOF1-203ENST00000394269 AP3M2P53677 418 aa11.8□□□□□ -0.52
TCOF1-203ENST00000394269 HADHBP55084 474 aaKnown RBP11.8□□□□□ -0.52
TCOF1-203ENST00000394269 PSMC1P62191 440 aaKnown RBP11.8□□□□□ -0.52
TCOF1-203ENST00000394269 CALCOCO2Q13137 446 aa11.8□□□□□ -0.52
TCOF1-203ENST00000394269 PDCLQ13371 301 aa11.8□□□□□ -0.52
TCOF1-203ENST00000394269 DUSP28Q4G0W2 176 aa11.8□□□□□ -0.52
TCOF1-203ENST00000394269 PIK3R5Q8WYR1 880 aa11.8□□□□□ -0.52
TCOF1-203ENST00000394269 PCDH10Q9P2E7 1040 aa11.8□□□□□ -0.52
TCOF1-203ENST00000394269 SNX9Q9Y5X1 595 aa11.8□□□□□ -0.52
TCOF1-203ENST00000394269 IFNB1P01574 187 aa11.8□□□□□ -0.52
TCOF1-203ENST00000394269 CYP2C9P11712 490 aa11.8□□□□□ -0.52
TCOF1-203ENST00000394269 RGS7P49802 495 aa11.8□□□□□ -0.52
TCOF1-203ENST00000394269 HP1BP3Q5SSJ5 553 aaPredicted RBP11.8□□□□□ -0.52
TCOF1-203ENST00000394269 TXNRD3NBQ6F5E7 133 aa11.8□□□□□ -0.52
TCOF1-203ENST00000394269 FOXR1Q6PIV2 292 aa11.8□□□□□ -0.52
TCOF1-203ENST00000394269 PWWP2AQ96N64 755 aa11.8□□□□□ -0.52
TCOF1-203ENST00000394269 RSPH14Q9UHP6 348 aa11.8□□□□□ -0.52
TCOF1-203ENST00000394269 TTC7AQ9ULT0 858 aaPredicted RBP11.8□□□□□ -0.52
TCOF1-203ENST00000394269 M0QYV0 167 aa11.8□□□□□ -0.52
TCOF1-203ENST00000394269 MYBL1P10243 752 aa11.8□□□□□ -0.52
TCOF1-203ENST00000394269 GNGT1P63211 74 aa11.8□□□□□ -0.52
TCOF1-203ENST00000394269 POU5F1Q01860 360 aaKnown RBP11.8□□□□□ -0.52
TCOF1-203ENST00000394269 KRT17Q04695 432 aa11.8□□□□□ -0.52
TCOF1-203ENST00000394269 MTM1Q13496 603 aa11.8□□□□□ -0.52
TCOF1-203ENST00000394269 UAP1Q16222 522 aaPredicted RBP11.8□□□□□ -0.52
TCOF1-203ENST00000394269 CDO1Q16878 200 aa11.8□□□□□ -0.52
TCOF1-203ENST00000394269 CST9Q5W186 159 aa11.8□□□□□ -0.52
TCOF1-203ENST00000394269 RHOT1Q8IXI2 618 aa11.8□□□□□ -0.52
TCOF1-203ENST00000394269 RUBCNQ92622 972 aa11.8□□□□□ -0.52
TCOF1-203ENST00000394269 EIF2AQ9BY44 585 aaKnown RBP11.8□□□□□ -0.52
TCOF1-203ENST00000394269 SDCBP2Q9H190 292 aa11.8□□□□□ -0.52
TCOF1-203ENST00000394269 C10orf88Q9H8K7 445 aa11.8□□□□□ -0.52
TCOF1-203ENST00000394269 LRRC4CQ9HCJ2 640 aa11.8□□□□□ -0.52
TCOF1-203ENST00000394269 FAM49BQ9NUQ9 324 aa11.8□□□□□ -0.52
TCOF1-203ENST00000394269 SAE1Q9UBE0 346 aaPredicted RBP11.8□□□□□ -0.52
TCOF1-203ENST00000394269 PARP2Q9UGN5 583 aa11.8□□□□□ -0.52
TCOF1-203ENST00000394269 GOLGA8KD6RF30 607 aa11.79□□□□□ -0.52
TCOF1-203ENST00000394269 KRT1P04264 644 aa11.79□□□□□ -0.52
TCOF1-203ENST00000394269 MMP8P22894 467 aa11.79□□□□□ -0.52
TCOF1-203ENST00000394269 TNFRSF8P28908 595 aa11.79□□□□□ -0.52
TCOF1-203ENST00000394269 RFC1P35251 1148 aaPredicted RBP11.79□□□□□ -0.52
TCOF1-203ENST00000394269 GUCY1A3Q02108 690 aa11.79□□□□□ -0.52
TCOF1-203ENST00000394269 UBAP2Q5T6F2 1119 aaKnown RBP11.79□□□□□ -0.52
TCOF1-203ENST00000394269 TRIM72Q6ZMU5 477 aa11.79□□□□□ -0.52
TCOF1-203ENST00000394269 B4GALNT4Q76KP1 1039 aa11.79□□□□□ -0.52
TCOF1-203ENST00000394269 ANKRD23Q86SG2 305 aa11.79□□□□□ -0.52
TCOF1-203ENST00000394269 WDTC1Q8N5D0 677 aa11.79□□□□□ -0.52
TCOF1-203ENST00000394269 LPIN3Q9BQK8 851 aa11.79□□□□□ -0.52
TCOF1-203ENST00000394269 DPP3Q9NY33 737 aa11.79□□□□□ -0.52
TCOF1-203ENST00000394269 FLRT1Q9NZU1 646 aa11.79□□□□□ -0.52
TCOF1-203ENST00000394269 SCINQ9Y6U3 715 aa11.79□□□□□ -0.52
TCOF1-203ENST00000394269 LCTP09848 1927 aa11.79□□□□□ -0.52
TCOF1-203ENST00000394269 KIAA0100Q14667 2235 aaKnown RBP11.79□□□□□ -0.52
TCOF1-203ENST00000394269 IGF2BP3O00425 579 aaKnown RBP eCLIP11.79□□□□□ -0.52
TCOF1-203ENST00000394269 B4GALT4O60513 344 aa11.79□□□□□ -0.52
TCOF1-203ENST00000394269 TSPAN1O60635 241 aa11.79□□□□□ -0.52
TCOF1-203ENST00000394269 KRT3P12035 628 aa11.79□□□□□ -0.52
TCOF1-203ENST00000394269 PSMA2P25787 234 aa11.79□□□□□ -0.52
TCOF1-203ENST00000394269 CTNNA2P26232 953 aa11.79□□□□□ -0.52
TCOF1-203ENST00000394269 YARSP54577 528 aaKnown RBP11.79□□□□□ -0.52
TCOF1-203ENST00000394269 ADCY2Q08462 1091 aa11.79□□□□□ -0.52
TCOF1-203ENST00000394269 MARCH8Q5T0T0 291 aa11.79□□□□□ -0.52
TCOF1-203ENST00000394269 DUPD1Q68J44 220 aa11.79□□□□□ -0.52
TCOF1-203ENST00000394269 TMC3Q7Z5M5 1100 aa11.79□□□□□ -0.52
TCOF1-203ENST00000394269 MORC4Q8TE76 937 aa11.79□□□□□ -0.52
TCOF1-203ENST00000394269 CAPS2Q9BXY5 557 aa11.79□□□□□ -0.52
TCOF1-203ENST00000394269 OSBPL8Q9BZF1 889 aa11.79□□□□□ -0.52
TCOF1-203ENST00000394269 SEMA4AQ9H3S1 761 aa11.79□□□□□ -0.52
TCOF1-203ENST00000394269 NOVA2Q9UNW9 492 aaKnown RBP11.79□□□□□ -0.52
TCOF1-203ENST00000394269 ZNF148Q9UQR1 794 aa11.79□□□□□ -0.52
TCOF1-203ENST00000394269 PIN4Q9Y237 131 aaKnown RBP11.79□□□□□ -0.52
TCOF1-203ENST00000394269 PAPPA2Q9BXP8 1791 aa11.79□□□□□ -0.52
TCOF1-203ENST00000394269 PPEF2O14830 753 aa11.79□□□□□ -0.52
TCOF1-203ENST00000394269 MTA2O94776 668 aa11.79□□□□□ -0.52
TCOF1-203ENST00000394269 ACSL3O95573 720 aa11.79□□□□□ -0.52
TCOF1-203ENST00000394269 PDGFRBP09619 1106 aa11.79□□□□□ -0.52
TCOF1-203ENST00000394269 PROZP22891 400 aa11.79□□□□□ -0.52
TCOF1-203ENST00000394269 OGDHQ02218 1023 aa11.79□□□□□ -0.52
TCOF1-203ENST00000394269 DHX34Q14147 1143 aaKnown RBP11.79□□□□□ -0.52
TCOF1-203ENST00000394269 FAM110CQ1W6H9 321 aa11.79□□□□□ -0.52
TCOF1-203ENST00000394269 ZNF365Q70YC5 407 aa11.79□□□□□ -0.52
TCOF1-203ENST00000394269 ANKS1BQ7Z6G8 1248 aa11.79□□□□□ -0.52
TCOF1-203ENST00000394269 TLK2Q86UE8 772 aa11.79□□□□□ -0.52
TCOF1-203ENST00000394269 C18orf25Q96B23 403 aaPredicted RBP11.79□□□□□ -0.52
TCOF1-203ENST00000394269 AVENQ9NQS1 362 aaPredicted RBP11.79□□□□□ -0.52
TCOF1-203ENST00000394269 PTPRFP10586 1907 aa11.78□□□□□ -0.52
TCOF1-203ENST00000394269 MEFVO15553 781 aaPredicted RBP11.78□□□□□ -0.52
TCOF1-203ENST00000394269 HSPA9P38646 679 aaKnown RBP11.78□□□□□ -0.52
TCOF1-203ENST00000394269 GRB14Q14449 540 aa11.78□□□□□ -0.52
TCOF1-203ENST00000394269 PPP2R5EQ16537 467 aa11.78□□□□□ -0.52
TCOF1-203ENST00000394269 PTPN20Q4JDL3 420 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms