RNA–Protein interactions for RNA: ENST00000393211.3

COL17A1-203, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL17A1, Length 1,610 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-203ENST00000393211 TRPC5Q9UL62 973 aaPredicted RBP10.55□□□□□ -0.72
COL17A1-203ENST00000393211 TMEM150BA6NC51 233 aa10.55□□□□□ -0.72
COL17A1-203ENST00000393211 A8MUI8 341 aa10.55□□□□□ -0.72
COL17A1-203ENST00000393211 FOXO6A8MYZ6 492 aa10.55□□□□□ -0.72
COL17A1-203ENST00000393211 PSAPP07602 524 aa10.55□□□□□ -0.72
COL17A1-203ENST00000393211 TROVE2P10155 538 aaKnown RBP eCLIP10.55□□□□□ -0.72
COL17A1-203ENST00000393211 CHRM1P11229 460 aaPredicted RBP10.55□□□□□ -0.72
COL17A1-203ENST00000393211 PECAM1P16284 738 aaPredicted RBP10.55□□□□□ -0.72
COL17A1-203ENST00000393211 TNNI1P19237 187 aa10.55□□□□□ -0.72
COL17A1-203ENST00000393211 CD58P19256 250 aa10.55□□□□□ -0.72
COL17A1-203ENST00000393211 CA4P22748 312 aa10.55□□□□□ -0.72
COL17A1-203ENST00000393211 MMP8P22894 467 aa10.55□□□□□ -0.72
COL17A1-203ENST00000393211 GCKP35557 465 aa10.55□□□□□ -0.72
COL17A1-203ENST00000393211 LIG4P49917 911 aa10.55□□□□□ -0.72
COL17A1-203ENST00000393211 DNAJC3Q13217 504 aa10.55□□□□□ -0.72
COL17A1-203ENST00000393211 KLHL38Q2WGJ6 581 aa10.55□□□□□ -0.72
COL17A1-203ENST00000393211 TFDP3Q5H9I0 405 aa10.55□□□□□ -0.72
COL17A1-203ENST00000393211 RSBN1LQ6PCB5 846 aaPredicted RBP10.55□□□□□ -0.72
COL17A1-203ENST00000393211 SPOCD1Q6ZMY3 1216 aa10.55□□□□□ -0.72
COL17A1-203ENST00000393211 POLNQ7Z5Q5 900 aa10.55□□□□□ -0.72
COL17A1-203ENST00000393211 NIPA2Q8N8Q9 360 aa10.55□□□□□ -0.72
COL17A1-203ENST00000393211 TTC13Q8NBP0 860 aa10.55□□□□□ -0.72
COL17A1-203ENST00000393211 AKT1S1Q96B36 256 aa10.55□□□□□ -0.72
COL17A1-203ENST00000393211 NAF1Q96HR8 494 aaKnown RBP10.55□□□□□ -0.72
COL17A1-203ENST00000393211 PAIP2Q9BPZ3 127 aaKnown RBP10.55□□□□□ -0.72
COL17A1-203ENST00000393211 VPS11Q9H270 941 aa10.55□□□□□ -0.72
COL17A1-203ENST00000393211 VPS37BQ9H9H4 285 aa10.55□□□□□ -0.72
COL17A1-203ENST00000393211 DNPEPQ9ULA0 475 aa10.55□□□□□ -0.72
COL17A1-203ENST00000393211 TRIM33Q9UPN9 1127 aa10.55□□□□□ -0.72
COL17A1-203ENST00000393211 PCDHB4Q9Y5E5 795 aa10.55□□□□□ -0.72
COL17A1-203ENST00000393211 WDR81Q562E7 1941 aa10.54□□□□□ -0.72
COL17A1-203ENST00000393211 hCG_1818297A0A087WSY0 165 aa10.54□□□□□ -0.72
COL17A1-203ENST00000393211 POC1B-GALNT4F8VUJ3 575 aa10.54□□□□□ -0.72
COL17A1-203ENST00000393211 ATP9AO75110 1047 aa10.54□□□□□ -0.72
COL17A1-203ENST00000393211 PEX11AO75192 247 aa10.54□□□□□ -0.72
COL17A1-203ENST00000393211 SPAG7O75391 227 aa10.54□□□□□ -0.72
COL17A1-203ENST00000393211 SMNDC1O75940 238 aaKnown RBP eCLIP10.54□□□□□ -0.72
COL17A1-203ENST00000393211 IL1BP01584 269 aa10.54□□□□□ -0.72
COL17A1-203ENST00000393211 KRT1P04264 644 aa10.54□□□□□ -0.72
COL17A1-203ENST00000393211 EIF2AK2P19525 551 aaKnown RBP10.54□□□□□ -0.72
COL17A1-203ENST00000393211 CCND2P30279 289 aa10.54□□□□□ -0.72
COL17A1-203ENST00000393211 RPA3P35244 121 aaPredicted RBP10.54□□□□□ -0.72
COL17A1-203ENST00000393211 ZNF132P52740 706 aa10.54□□□□□ -0.72
COL17A1-203ENST00000393211 RPS6P62753 249 aaKnown RBP10.54□□□□□ -0.72
COL17A1-203ENST00000393211 GPS1Q13098 491 aa10.54□□□□□ -0.72
COL17A1-203ENST00000393211 CBLBQ13191 982 aa10.54□□□□□ -0.72
COL17A1-203ENST00000393211 TAF11Q15544 211 aa10.54□□□□□ -0.72
COL17A1-203ENST00000393211 ZYXQ15942 572 aaKnown RBP10.54□□□□□ -0.72
COL17A1-203ENST00000393211 TDRD10Q5VZ19 366 aaKnown RBP10.54□□□□□ -0.72
COL17A1-203ENST00000393211 ADGRD1Q6QNK2 874 aa10.54□□□□□ -0.72
COL17A1-203ENST00000393211 SEPT14Q6ZU15 432 aa10.54□□□□□ -0.72
COL17A1-203ENST00000393211 TAS1R3Q7RTX0 852 aa10.54□□□□□ -0.72
COL17A1-203ENST00000393211 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP10.54□□□□□ -0.72
COL17A1-203ENST00000393211 ATP11CQ8NB49 1132 aa10.54□□□□□ -0.72
COL17A1-203ENST00000393211 RBBP8NLQ8NC74 664 aaPredicted RBP10.54□□□□□ -0.72
COL17A1-203ENST00000393211 FAM13CQ8NE31 585 aa10.54□□□□□ -0.72
COL17A1-203ENST00000393211 ZNF75CPQ92670 426 aaPredicted RBP10.54□□□□□ -0.72
COL17A1-203ENST00000393211 SLC7A6OSQ96CW6 309 aaPredicted RBP10.54□□□□□ -0.72
COL17A1-203ENST00000393211 CDHR1Q96JP9 859 aa10.54□□□□□ -0.72
COL17A1-203ENST00000393211 RMDN3Q96TC7 470 aa10.54□□□□□ -0.72
COL17A1-203ENST00000393211 GMLQ99445 158 aa10.54□□□□□ -0.72
COL17A1-203ENST00000393211 CGRRF1Q99675 332 aa10.54□□□□□ -0.72
COL17A1-203ENST00000393211 DHRS4Q9BTZ2 278 aa10.54□□□□□ -0.72
COL17A1-203ENST00000393211 KIFC3Q9BVG8 833 aa10.54□□□□□ -0.72
COL17A1-203ENST00000393211 KIAA1683Q9H0B3 1180 aa10.54□□□□□ -0.72
COL17A1-203ENST00000393211 DCLRE1BQ9H816 532 aa10.54□□□□□ -0.72
COL17A1-203ENST00000393211 ANKFY1Q9P2R3 1169 aa10.54□□□□□ -0.72
COL17A1-203ENST00000393211 AGO2Q9UKV8 859 aaKnown RBP10.54□□□□□ -0.72
COL17A1-203ENST00000393211 ZMYND8Q9ULU4 1186 aaPredicted RBP10.54□□□□□ -0.72
COL17A1-203ENST00000393211 DYNC1LI1Q9Y6G9 523 aaKnown RBP10.54□□□□□ -0.72
COL17A1-203ENST00000393211 SIP14410 1827 aa10.54□□□□□ -0.72
COL17A1-203ENST00000393211 TCRBV5S1A1TA0A578 114 aa10.53□□□□□ -0.72
COL17A1-203ENST00000393211 A6NHS1 94 aa10.53□□□□□ -0.72
COL17A1-203ENST00000393211 YDJCA8MPS7 323 aa10.53□□□□□ -0.72
COL17A1-203ENST00000393211 E7ESA3 106 aa10.53□□□□□ -0.72
COL17A1-203ENST00000393211 STAM2O75886 525 aa10.53□□□□□ -0.72
COL17A1-203ENST00000393211 TGDSO95455 350 aa10.53□□□□□ -0.72
COL17A1-203ENST00000393211 VNN1O95497 513 aa10.53□□□□□ -0.72
COL17A1-203ENST00000393211 TPBGLP0DKB5 382 aa10.53□□□□□ -0.72
COL17A1-203ENST00000393211 T-ENOLP0DO92 83 aa10.53□□□□□ -0.72
COL17A1-203ENST00000393211 MYCLP12524 364 aaPredicted RBP10.53□□□□□ -0.72
COL17A1-203ENST00000393211 CALRP27797 417 aaKnown RBP10.53□□□□□ -0.72
COL17A1-203ENST00000393211 SSR1P43307 286 aaKnown RBP10.53□□□□□ -0.72
COL17A1-203ENST00000393211 ARL4CP56559 192 aa10.53□□□□□ -0.72
COL17A1-203ENST00000393211 IRX1P78414 480 aaPredicted RBP10.53□□□□□ -0.72
COL17A1-203ENST00000393211 GRM1Q13255 1194 aa10.53□□□□□ -0.72
COL17A1-203ENST00000393211 HIF1AQ16665 826 aa10.53□□□□□ -0.72
COL17A1-203ENST00000393211 ARHGEF16Q5VV41 709 aa10.53□□□□□ -0.72
COL17A1-203ENST00000393211 CAPRIN2Q6IMN6 1127 aaKnown RBP10.53□□□□□ -0.72
COL17A1-203ENST00000393211 TMEM270Q6UE05 265 aa10.53□□□□□ -0.72
COL17A1-203ENST00000393211 MFSD7Q6UXD7 560 aa10.53□□□□□ -0.72
COL17A1-203ENST00000393211 VSIG10LQ86VR7 867 aa10.53□□□□□ -0.72
COL17A1-203ENST00000393211 LONP2Q86WA8 852 aa10.53□□□□□ -0.72
COL17A1-203ENST00000393211 CCDC125Q86Z20 511 aa10.53□□□□□ -0.72
COL17A1-203ENST00000393211 LMNTD2Q8IXW0 634 aa10.53□□□□□ -0.72
COL17A1-203ENST00000393211 PPIL6Q8IXY8 311 aa10.53□□□□□ -0.72
COL17A1-203ENST00000393211 ZBED8Q8IZ13 594 aa10.53□□□□□ -0.72
COL17A1-203ENST00000393211 UBR7Q8N806 425 aa10.53□□□□□ -0.72
COL17A1-203ENST00000393211 SLC35B2Q8TB61 432 aa10.53□□□□□ -0.72
COL17A1-203ENST00000393211 CNKSR2Q8WXI2 1034 aa10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms