RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 TRIM72Q6ZMU5 477 aa9.09□□□□□ -0.95
LIG3-202ENST00000378526 STRA8Q7Z7C7 330 aa9.09□□□□□ -0.95
LIG3-202ENST00000378526 C11orf74Q86VG3 221 aa9.09□□□□□ -0.95
LIG3-202ENST00000378526 EPHX4Q8IUS5 362 aa9.09□□□□□ -0.95
LIG3-202ENST00000378526 PHACTR1Q9C0D0 580 aa9.09□□□□□ -0.95
LIG3-202ENST00000378526 HSPBP1Q9NZL4 362 aa9.09□□□□□ -0.95
LIG3-202ENST00000378526 SNX13Q9Y5W8 968 aa9.09□□□□□ -0.95
LIG3-202ENST00000378526 SQORQ9Y6N5 450 aa9.09□□□□□ -0.95
LIG3-202ENST00000378526 PLEKHG2Q9H7P9 1386 aa9.09□□□□□ -0.95
LIG3-202ENST00000378526 TMEM120BA0PK00 339 aa9.09□□□□□ -0.95
LIG3-202ENST00000378526 IFNA7P01567 189 aa9.09□□□□□ -0.95
LIG3-202ENST00000378526 ANXA13P27216 316 aa9.09□□□□□ -0.95
LIG3-202ENST00000378526 HIRAP54198 1017 aaPredicted RBP9.09□□□□□ -0.95
LIG3-202ENST00000378526 GALNT3Q14435 633 aa9.09□□□□□ -0.95
LIG3-202ENST00000378526 ME3Q16798 604 aa9.09□□□□□ -0.95
LIG3-202ENST00000378526 HEATR6Q6AI08 1181 aaKnown RBP9.09□□□□□ -0.95
LIG3-202ENST00000378526 ARMCX2Q7L311 632 aa9.09□□□□□ -0.95
LIG3-202ENST00000378526 CENPLQ8N0S6 344 aaPredicted RBP9.09□□□□□ -0.95
LIG3-202ENST00000378526 C1QTNF1Q9BXJ1 281 aa9.09□□□□□ -0.95
LIG3-202ENST00000378526 NMRK1Q9NWW6 199 aa9.09□□□□□ -0.95
LIG3-202ENST00000378526 SCAF8Q9UPN6 1271 aaKnown RBP9.09□□□□□ -0.95
LIG3-202ENST00000378526 MTMR6Q9Y217 621 aa9.09□□□□□ -0.95
LIG3-202ENST00000378526 KCNIP3Q9Y2W7 256 aa9.09□□□□□ -0.95
LIG3-202ENST00000378526 NOTOA8MTQ0 251 aa9.09□□□□□ -0.95
LIG3-202ENST00000378526 TM9SF1O15321 606 aa9.09□□□□□ -0.95
LIG3-202ENST00000378526 FAM20BO75063 409 aa9.09□□□□□ -0.95
LIG3-202ENST00000378526 PAX3P23760 479 aa9.09□□□□□ -0.95
LIG3-202ENST00000378526 SLC26A3P40879 764 aa9.09□□□□□ -0.95
LIG3-202ENST00000378526 GUCA1AP43080 201 aaPredicted RBP9.09□□□□□ -0.95
LIG3-202ENST00000378526 SLC39A14Q15043 492 aa9.09□□□□□ -0.95
LIG3-202ENST00000378526 ARHGEF16Q5VV41 709 aa9.09□□□□□ -0.95
LIG3-202ENST00000378526 MARK2Q7KZI7 788 aaKnown RBP9.09□□□□□ -0.95
LIG3-202ENST00000378526 OSBPL6Q9BZF3 934 aa9.09□□□□□ -0.95
LIG3-202ENST00000378526 VPS4AQ9UN37 437 aa9.09□□□□□ -0.95
LIG3-202ENST00000378526 OSBPP22059 807 aa9.09□□□□□ -0.95
LIG3-202ENST00000378526 ITGA3P26006 1051 aa9.09□□□□□ -0.95
LIG3-202ENST00000378526 TECP42680 631 aa9.09□□□□□ -0.95
LIG3-202ENST00000378526 CDH6P55285 790 aa9.09□□□□□ -0.95
LIG3-202ENST00000378526 ENPEPQ07075 957 aa9.09□□□□□ -0.95
LIG3-202ENST00000378526 PPM1LQ5SGD2 360 aa9.09□□□□□ -0.95
LIG3-202ENST00000378526 CWF19L1Q69YN2 538 aaKnown RBP9.09□□□□□ -0.95
LIG3-202ENST00000378526 TYW3Q6IPR3 259 aaKnown RBP9.09□□□□□ -0.95
LIG3-202ENST00000378526 MIS18BP1Q6P0N0 1132 aa9.09□□□□□ -0.95
LIG3-202ENST00000378526 TDRD5Q8NAT2 981 aaKnown RBP9.09□□□□□ -0.95
LIG3-202ENST00000378526 TRPV1Q8NER1 839 aa9.09□□□□□ -0.95
LIG3-202ENST00000378526 SIPA1Q96FS4 1042 aa9.09□□□□□ -0.95
LIG3-202ENST00000378526 TNIP3Q96KP6 325 aa9.09□□□□□ -0.95
LIG3-202ENST00000378526 APOL6Q9BWW8 343 aa9.09□□□□□ -0.95
LIG3-202ENST00000378526 UBE2TQ9NPD8 197 aaPredicted RBP9.09□□□□□ -0.95
LIG3-202ENST00000378526 MAN1B1Q9UKM7 699 aa9.09□□□□□ -0.95
LIG3-202ENST00000378526 CSNK2BP67870 215 aa9.09□□□□□ -0.95
LIG3-202ENST00000378526 ZNF200P98182 395 aaPredicted RBP9.09□□□□□ -0.95
LIG3-202ENST00000378526 COL23A1Q86Y22 540 aaPredicted RBP9.09□□□□□ -0.95
LIG3-202ENST00000378526 ANKRD13AQ8IZ07 590 aa9.09□□□□□ -0.95
LIG3-202ENST00000378526 S100A13Q99584 98 aa9.09□□□□□ -0.95
LIG3-202ENST00000378526 MYL10Q9BUA6 226 aa9.09□□□□□ -0.95
LIG3-202ENST00000378526 ZCWPW1Q9H0M4 648 aa9.09□□□□□ -0.95
LIG3-202ENST00000378526 ARMT1Q9H993 441 aa9.09□□□□□ -0.95
LIG3-202ENST00000378526 SYNDIG1LA6NDD5 238 aa9.08□□□□□ -0.96
LIG3-202ENST00000378526 SRRM3A6NNA2 597 aaPredicted RBP9.08□□□□□ -0.96
LIG3-202ENST00000378526 SLCO1B7G3V0H7 640 aa9.08□□□□□ -0.96
LIG3-202ENST00000378526 MYL12BO14950 172 aa9.08□□□□□ -0.96
LIG3-202ENST00000378526 LDHAP00338 332 aaKnown RBP9.08□□□□□ -0.96
LIG3-202ENST00000378526 ENO2P09104 434 aaPredicted RBP9.08□□□□□ -0.96
LIG3-202ENST00000378526 GSSP48637 474 aa9.08□□□□□ -0.96
LIG3-202ENST00000378526 HK2P52789 917 aa9.08□□□□□ -0.96
LIG3-202ENST00000378526 SRP54P61011 504 aaKnown RBP9.08□□□□□ -0.96
LIG3-202ENST00000378526 OSCP1Q8WVF1 389 aa9.08□□□□□ -0.96
LIG3-202ENST00000378526 SLC9A6Q92581 669 aa9.08□□□□□ -0.96
LIG3-202ENST00000378526 MYLPFQ96A32 169 aa9.08□□□□□ -0.96
LIG3-202ENST00000378526 NYXQ9GZU5 481 aa9.08□□□□□ -0.96
LIG3-202ENST00000378526 MKLN1Q9UL63 735 aa9.08□□□□□ -0.96
LIG3-202ENST00000378526 ALOX15P16050 662 aaPredicted RBP9.08□□□□□ -0.96
LIG3-202ENST00000378526 CDC16Q13042 620 aa9.08□□□□□ -0.96
LIG3-202ENST00000378526 PICALMQ13492 652 aa9.08□□□□□ -0.96
LIG3-202ENST00000378526 TMEM132EQ6IEE7 984 aa9.08□□□□□ -0.96
LIG3-202ENST00000378526 MIGA2Q7L4E1 593 aa9.08□□□□□ -0.96
LIG3-202ENST00000378526 CDKL3Q8IVW4 592 aaPredicted RBP9.08□□□□□ -0.96
LIG3-202ENST00000378526 IP6K2Q9UHH9 426 aa9.08□□□□□ -0.96
LIG3-202ENST00000378526 INPP5FQ9Y2H2 1132 aa9.08□□□□□ -0.96
LIG3-202ENST00000378526 IVNS1ABPQ9Y6Y0 642 aa9.08□□□□□ -0.96
LIG3-202ENST00000378526 MYH15Q9Y2K3 1946 aa9.08□□□□□ -0.96
LIG3-202ENST00000378526 TCN1P20061 433 aaPredicted RBP9.08□□□□□ -0.96
LIG3-202ENST00000378526 GPTP24298 496 aa9.08□□□□□ -0.96
LIG3-202ENST00000378526 FAM98BQ52LJ0 330 aaKnown RBP9.08□□□□□ -0.96
LIG3-202ENST00000378526 PDCD4Q53EL6 469 aaKnown RBP9.08□□□□□ -0.96
LIG3-202ENST00000378526 GPIHBP1Q8IV16 184 aa9.08□□□□□ -0.96
LIG3-202ENST00000378526 MB21D1Q8N884 522 aa9.08□□□□□ -0.96
LIG3-202ENST00000378526 PDPRQ8NCN5 879 aa9.08□□□□□ -0.96
LIG3-202ENST00000378526 ATL2Q8NHH9 583 aa9.08□□□□□ -0.96
LIG3-202ENST00000378526 NDST4Q9H3R1 872 aa9.08□□□□□ -0.96
LIG3-202ENST00000378526 WDR35Q9P2L0 1181 aa9.08□□□□□ -0.96
LIG3-202ENST00000378526 TAGLN3Q9UI15 199 aa9.08□□□□□ -0.96
LIG3-202ENST00000378526 CYP2D6P10635 497 aa9.08□□□□□ -0.96
LIG3-202ENST00000378526 PLCL1Q15111 1095 aa9.08□□□□□ -0.96
LIG3-202ENST00000378526 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP9.08□□□□□ -0.96
LIG3-202ENST00000378526 SMIM5Q71RC9 77 aa9.08□□□□□ -0.96
LIG3-202ENST00000378526 ACCSQ96QU6 501 aa9.08□□□□□ -0.96
LIG3-202ENST00000378526 MARCH7Q9H992 704 aa9.08□□□□□ -0.96
LIG3-202ENST00000378526 TLR7Q9NYK1 1049 aaKnown RBP9.08□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms