RNA–Protein interactions for RNA: ENST00000376636.7

VPS13A-205, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 11,145 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-205ENST00000376636 SPATA4Q8NEY3 305 aa12.12□□□□□ -0.47
VPS13A-205ENST00000376636 ROPN1BQ9BZX4 212 aaPredicted RBP12.12□□□□□ -0.47
VPS13A-205ENST00000376636 ROPN1Q9HAT0 212 aaPredicted RBP12.12□□□□□ -0.47
VPS13A-205ENST00000376636 IL1RL2Q9HB29 575 aa12.12□□□□□ -0.47
VPS13A-205ENST00000376636 RPAP1Q9BWH6 1393 aaPredicted RBP12.12□□□□□ -0.47
VPS13A-205ENST00000376636 KNOP1Q1ED39 458 aaKnown RBP12.12□□□□□ -0.47
VPS13A-205ENST00000376636 UNC45BQ8IWX7 931 aa12.12□□□□□ -0.47
VPS13A-205ENST00000376636 TMC2Q8TDI7 906 aa12.12□□□□□ -0.47
VPS13A-205ENST00000376636 ADI1Q9BV57 179 aa12.12□□□□□ -0.47
VPS13A-205ENST00000376636 LEMD3Q9Y2U8 911 aa12.12□□□□□ -0.47
VPS13A-205ENST00000376636 BMP10O95393 424 aa12.12□□□□□ -0.47
VPS13A-205ENST00000376636 HPGDP15428 266 aa12.12□□□□□ -0.47
VPS13A-205ENST00000376636 PTRHD1Q6GMV3 140 aaKnown RBP12.12□□□□□ -0.47
VPS13A-205ENST00000376636 ZCCHC8Q6NZY4 707 aaKnown RBP12.12□□□□□ -0.47
VPS13A-205ENST00000376636 CYFIP1Q7L576 1253 aa12.12□□□□□ -0.47
VPS13A-205ENST00000376636 RASGRP4Q8TDF6 673 aa12.12□□□□□ -0.47
VPS13A-205ENST00000376636 CNKSR1Q969H4 720 aa12.12□□□□□ -0.47
VPS13A-205ENST00000376636 SIK2Q9H0K1 926 aa12.12□□□□□ -0.47
VPS13A-205ENST00000376636 ALG13Q9NP73 1137 aaKnown RBP12.12□□□□□ -0.47
VPS13A-205ENST00000376636 NUMA1Q14980 2115 aa12.12□□□□□ -0.47
VPS13A-205ENST00000376636 A0A1W2PRG6 482 aa12.12□□□□□ -0.47
VPS13A-205ENST00000376636 BTN3A3O00478 584 aa12.12□□□□□ -0.47
VPS13A-205ENST00000376636 CDC40O60508 579 aaKnown RBP eCLIP12.12□□□□□ -0.473e-6■■■■□ 23
VPS13A-205ENST00000376636 IFNAR1P17181 557 aa12.12□□□□□ -0.47
VPS13A-205ENST00000376636 RCVRNP35243 200 aa12.12□□□□□ -0.47
VPS13A-205ENST00000376636 GPR1P46091 355 aa12.12□□□□□ -0.47
VPS13A-205ENST00000376636 RAB2AP61019 212 aa12.12□□□□□ -0.47
VPS13A-205ENST00000376636 UXS1Q8NBZ7 420 aa12.12□□□□□ -0.47
VPS13A-205ENST00000376636 SSH3Q8TE77 659 aa12.12□□□□□ -0.47
VPS13A-205ENST00000376636 BTN2A1Q7KYR7 527 aa12.12□□□□□ -0.47
VPS13A-205ENST00000376636 NSUN7Q8NE18 718 aaKnown RBP12.12□□□□□ -0.47
VPS13A-205ENST00000376636 MED15Q96RN5 788 aa12.12□□□□□ -0.47
VPS13A-205ENST00000376636 PI4KBQ9UBF8 816 aa12.12□□□□□ -0.47
VPS13A-205ENST00000376636 NEU2Q9Y3R4 380 aa12.12□□□□□ -0.47
VPS13A-205ENST00000376636 S100GP29377 79 aa12.12□□□□□ -0.47
VPS13A-205ENST00000376636 GCLMP48507 274 aa12.12□□□□□ -0.47
VPS13A-205ENST00000376636 DUOXA2Q1HG44 320 aa12.12□□□□□ -0.47
VPS13A-205ENST00000376636 TCEAL5Q5H9L2 206 aa12.12□□□□□ -0.47
VPS13A-205ENST00000376636 CACTIN-AS1Q8N1I8 211 aa12.12□□□□□ -0.47
VPS13A-205ENST00000376636 MAP4K1Q92918 833 aa12.12□□□□□ -0.47
VPS13A-205ENST00000376636 SMAD5Q99717 465 aaKnown RBP12.12□□□□□ -0.47
VPS13A-205ENST00000376636 SPON2Q9BUD6 331 aa12.12□□□□□ -0.47
VPS13A-205ENST00000376636 TM9SF1O15321 606 aa12.11□□□□□ -0.47
VPS13A-205ENST00000376636 ASMTLO95671 621 aa12.11□□□□□ -0.47
VPS13A-205ENST00000376636 MYL12AP19105 171 aa12.11□□□□□ -0.47
VPS13A-205ENST00000376636 ARHGDIBP52566 201 aa12.11□□□□□ -0.47
VPS13A-205ENST00000376636 ZMYM1Q5SVZ6 1142 aa12.11□□□□□ -0.47
VPS13A-205ENST00000376636 PPP1R18Q6NYC8 613 aa12.11□□□□□ -0.47
VPS13A-205ENST00000376636 BNIPLQ7Z465 357 aa12.11□□□□□ -0.47
VPS13A-205ENST00000376636 DAPK2Q9UIK4 370 aa12.11□□□□□ -0.47
VPS13A-205ENST00000376636 B2RBV5 119 aa12.11□□□□□ -0.47
VPS13A-205ENST00000376636 WWP2O00308 870 aa12.11□□□□□ -0.47
VPS13A-205ENST00000376636 SOAT2O75908 522 aa12.11□□□□□ -0.47
VPS13A-205ENST00000376636 TWF1Q12792 350 aa12.11□□□□□ -0.47
VPS13A-205ENST00000376636 ZSWIM7Q19AV6 140 aa12.11□□□□□ -0.47
VPS13A-205ENST00000376636 CHSY1Q86X52 802 aa12.11□□□□□ -0.47
VPS13A-205ENST00000376636 S100A13Q99584 98 aa12.11□□□□□ -0.47
VPS13A-205ENST00000376636 TCHHQ07283 1943 aa12.11□□□□□ -0.47
VPS13A-205ENST00000376636 LAMC1P11047 1609 aa12.11□□□□□ -0.47
VPS13A-205ENST00000376636 FAM220BPB1ANY3 271 aa12.11□□□□□ -0.47
VPS13A-205ENST00000376636 TRAPPC3O43617 180 aa12.11□□□□□ -0.47
VPS13A-205ENST00000376636 RPN2P04844 631 aa12.11□□□□□ -0.47
VPS13A-205ENST00000376636 NOS3P29474 1203 aa12.11□□□□□ -0.47
VPS13A-205ENST00000376636 ZBTB10Q96DT7 871 aa12.11□□□□□ -0.47
VPS13A-205ENST00000376636 IGF2BP3O00425 579 aaKnown RBP eCLIP12.11□□□□□ -0.47
VPS13A-205ENST00000376636 CHL1O00533 1208 aa12.11□□□□□ -0.47
VPS13A-205ENST00000376636 SERPINB8P50452 374 aa12.11□□□□□ -0.47
VPS13A-205ENST00000376636 RAD23AP54725 363 aa12.11□□□□□ -0.47
VPS13A-205ENST00000376636 SUGP1Q8IWZ8 645 aaKnown RBP12.11□□□□□ -0.47
VPS13A-205ENST00000376636 ILKAPQ9H0C8 392 aaPredicted RBP12.11□□□□□ -0.47
VPS13A-205ENST00000376636 RAD18Q9NS91 495 aa12.11□□□□□ -0.47
VPS13A-205ENST00000376636 V9GYQ6 96 aa12.11□□□□□ -0.47
VPS13A-205ENST00000376636 BAZ2BQ9UIF8 2168 aaKnown RBP12.11□□□□□ -0.47
VPS13A-205ENST00000376636 GSTM1P09488 218 aa12.11□□□□□ -0.47
VPS13A-205ENST00000376636 PRELPP51888 382 aa12.11□□□□□ -0.47
VPS13A-205ENST00000376636 CSNK2BP67870 215 aa12.11□□□□□ -0.47
VPS13A-205ENST00000376636 ZNF333Q96JL9 665 aa12.11□□□□□ -0.47
VPS13A-205ENST00000376636 UBN2Q6ZU65 1347 aa12.11□□□□□ -0.47
VPS13A-205ENST00000376636 PPP2R1BP30154 601 aa12.11□□□□□ -0.47
VPS13A-205ENST00000376636 DRAP1Q14919 205 aaPredicted RBP12.11□□□□□ -0.47
VPS13A-205ENST00000376636 FBXO31Q5XUX0 539 aaPredicted RBP12.11□□□□□ -0.47
VPS13A-205ENST00000376636 OTOAQ7RTW8 1153 aa12.11□□□□□ -0.47
VPS13A-205ENST00000376636 MLH3Q9UHC1 1453 aa12.11□□□□□ -0.47
VPS13A-205ENST00000376636 PDS5AQ29RF7 1337 aaKnown RBP12.11□□□□□ -0.47
VPS13A-205ENST00000376636 BAG6P46379 1132 aa12.11□□□□□ -0.47
VPS13A-205ENST00000376636 ITIH4Q14624 930 aa12.11□□□□□ -0.47
VPS13A-205ENST00000376636 ZNF57Q68EA5 555 aaPredicted RBP12.11□□□□□ -0.47
VPS13A-205ENST00000376636 DCLRE1BQ9H816 532 aa12.11□□□□□ -0.47
VPS13A-205ENST00000376636 BTBD7Q9P203 1132 aa12.11□□□□□ -0.47
VPS13A-205ENST00000376636 AGAP9Q5VTM2 703 aa12.11□□□□□ -0.47
VPS13A-205ENST00000376636 LIN54Q6MZP7 749 aa12.11□□□□□ -0.47
VPS13A-205ENST00000376636 SLC10A4Q96EP9 437 aa12.11□□□□□ -0.47
VPS13A-205ENST00000376636 SYNDIG1Q9H7V2 258 aa12.11□□□□□ -0.47
VPS13A-205ENST00000376636 PSMD14O00487 310 aa12.1□□□□□ -0.47
VPS13A-205ENST00000376636 TTLL9Q3SXZ7 439 aa12.1□□□□□ -0.47
VPS13A-205ENST00000376636 WDR35Q9P2L0 1181 aa12.1□□□□□ -0.47
VPS13A-205ENST00000376636 PSMD12O00232 456 aaPredicted RBP12.1□□□□□ -0.47
VPS13A-205ENST00000376636 SNRPAP09012 282 aaKnown RBP12.1□□□□□ -0.47
VPS13A-205ENST00000376636 C1orf54Q8WWF1 131 aa12.1□□□□□ -0.47
VPS13A-205ENST00000376636 PPP2R3CQ969Q6 453 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms