RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 ASTN2O75129 1339 aaPredicted RBP22.3■■□□□ 1.16
UPF3A-202ENST00000375299 ZBED4O75132 1171 aa22.3■■□□□ 1.16
UPF3A-202ENST00000375299 ENTPD3O75355 529 aa22.3■■□□□ 1.16
UPF3A-202ENST00000375299 DSG3P32926 999 aa22.3■■□□□ 1.16
UPF3A-202ENST00000375299 RNASEH2BQ5TBB1 312 aaKnown RBP22.3■■□□□ 1.16
UPF3A-202ENST00000375299 SLC39A4Q6P5W5 647 aa22.3■■□□□ 1.16
UPF3A-202ENST00000375299 CEP120Q8N960 986 aa22.3■■□□□ 1.16
UPF3A-202ENST00000375299 RBM41Q96IZ5 413 aaKnown RBP22.3■■□□□ 1.16
UPF3A-202ENST00000375299 ADAM33Q9BZ11 813 aa22.3■■□□□ 1.16
UPF3A-202ENST00000375299 TMX2Q9Y320 296 aa22.3■■□□□ 1.16
UPF3A-202ENST00000375299 DENND3A2RUS2 1198 aa22.3■■□□□ 1.16
UPF3A-202ENST00000375299 PI4K2BG5E9Z4 385 aa22.3■■□□□ 1.16
UPF3A-202ENST00000375299 ATP2A1O14983 1001 aa22.3■■□□□ 1.16
UPF3A-202ENST00000375299 TLR3O15455 904 aaKnown RBP22.3■■□□□ 1.16
UPF3A-202ENST00000375299 CCDC22O60826 627 aa22.3■■□□□ 1.16
UPF3A-202ENST00000375299 ADRA1DP25100 572 aa22.3■■□□□ 1.16
UPF3A-202ENST00000375299 PDIA2Q13087 525 aaKnown RBP22.3■■□□□ 1.16
UPF3A-202ENST00000375299 UGCGQ16739 394 aa22.3■■□□□ 1.16
UPF3A-202ENST00000375299 IRGCQ6NXR0 463 aa22.3■■□□□ 1.16
UPF3A-202ENST00000375299 APBB1IPQ7Z5R6 666 aaPredicted RBP22.3■■□□□ 1.16
UPF3A-202ENST00000375299 LDHDQ86WU2 507 aa22.3■■□□□ 1.16
UPF3A-202ENST00000375299 POMGNT1Q8WZA1 660 aa22.3■■□□□ 1.16
UPF3A-202ENST00000375299 FAM136AQ96C01 138 aa22.3■■□□□ 1.16
UPF3A-202ENST00000375299 SLITRK1Q96PX8 696 aa22.3■■□□□ 1.16
UPF3A-202ENST00000375299 QTRT2Q9H974 415 aaKnown RBP22.3■■□□□ 1.16
UPF3A-202ENST00000375299 AGO4Q9HCK5 861 aaKnown RBP22.3■■□□□ 1.16
UPF3A-202ENST00000375299 SCINQ9Y6U3 715 aa22.3■■□□□ 1.16
UPF3A-202ENST00000375299 NPTX2P47972 431 aa22.29■■□□□ 1.16
UPF3A-202ENST00000375299 GEMIN4P57678 1058 aaKnown RBP22.29■■□□□ 1.16
UPF3A-202ENST00000375299 NOMO3P69849 1222 aa22.29■■□□□ 1.16
UPF3A-202ENST00000375299 CCDC6Q16204 474 aa22.29■■□□□ 1.16
UPF3A-202ENST00000375299 AP1ARQ63HQ0 302 aa22.29■■□□□ 1.16
UPF3A-202ENST00000375299 PLEKHA7Q6IQ23 1121 aa22.29■■□□□ 1.16
UPF3A-202ENST00000375299 SLC30A9Q6PML9 568 aa22.29■■□□□ 1.16
UPF3A-202ENST00000375299 RCOR2Q8IZ40 523 aa22.29■■□□□ 1.16
UPF3A-202ENST00000375299 RFWD2Q8NHY2 731 aa22.29■■□□□ 1.16
UPF3A-202ENST00000375299 AKT1S1Q96B36 256 aa22.29■■□□□ 1.16
UPF3A-202ENST00000375299 CSRNP1Q96S65 589 aa22.29■■□□□ 1.16
UPF3A-202ENST00000375299 BTBD10Q9BSF8 475 aa22.29■■□□□ 1.16
UPF3A-202ENST00000375299 SHOC2Q9UQ13 582 aa22.29■■□□□ 1.16
UPF3A-202ENST00000375299 SMIM24O75264 130 aa22.28■■□□□ 1.16
UPF3A-202ENST00000375299 HAUS5O94927 633 aa22.28■■□□□ 1.16
UPF3A-202ENST00000375299 TJP3O95049 919 aa22.28■■□□□ 1.16
UPF3A-202ENST00000375299 TRIM72Q6ZMU5 477 aa22.28■■□□□ 1.16
UPF3A-202ENST00000375299 NIPA1Q7RTP0 329 aa22.28■■□□□ 1.16
UPF3A-202ENST00000375299 PASD1Q8IV76 773 aa22.28■■□□□ 1.16
UPF3A-202ENST00000375299 C4orf19Q8IY42 314 aa22.28■■□□□ 1.16
UPF3A-202ENST00000375299 GPD1LQ8N335 351 aa22.28■■□□□ 1.16
UPF3A-202ENST00000375299 IL31RAQ8NI17 732 aa22.28■■□□□ 1.16
UPF3A-202ENST00000375299 FAM84AQ96KN4 292 aa22.28■■□□□ 1.16
UPF3A-202ENST00000375299 TUBB6Q9BUF5 446 aa22.28■■□□□ 1.16
UPF3A-202ENST00000375299 DCTN4Q9UJW0 460 aa22.28■■□□□ 1.16
UPF3A-202ENST00000375299 DRG1Q9Y295 367 aaKnown RBP22.28■■□□□ 1.16
UPF3A-202ENST00000375299 BRWD3Q6RI45 1802 aa22.28■■□□□ 1.16
UPF3A-202ENST00000375299 SIGLEC16A6NMB1 481 aa22.28■■□□□ 1.16
UPF3A-202ENST00000375299 NDC80O14777 642 aa22.28■■□□□ 1.16
UPF3A-202ENST00000375299 CFHP08603 1231 aa22.28■■□□□ 1.16
UPF3A-202ENST00000375299 ATF7P17544 494 aaPredicted RBP22.28■■□□□ 1.16
UPF3A-202ENST00000375299 SP100P23497 879 aaPredicted RBP22.28■■□□□ 1.16
UPF3A-202ENST00000375299 SESN3P58005 492 aa22.28■■□□□ 1.16
UPF3A-202ENST00000375299 DMP1Q13316 513 aaPredicted RBP22.28■■□□□ 1.16
UPF3A-202ENST00000375299 SEPT7Q16181 437 aaKnown RBP22.28■■□□□ 1.16
UPF3A-202ENST00000375299 ATP13A4Q4VNC1 1196 aa22.28■■□□□ 1.16
UPF3A-202ENST00000375299 XKR9Q5GH70 373 aa22.28■■□□□ 1.16
UPF3A-202ENST00000375299 PLA2G4FQ68DD2 849 aa22.28■■□□□ 1.16
UPF3A-202ENST00000375299 SAMD1Q6SPF0 538 aaPredicted RBP22.28■■□□□ 1.16
UPF3A-202ENST00000375299 DSTYKQ6XUX3 929 aa22.28■■□□□ 1.16
UPF3A-202ENST00000375299 TRMT1LQ7Z2T5 733 aaKnown RBP22.28■■□□□ 1.16
UPF3A-202ENST00000375299 PTCD3Q96EY7 689 aaKnown RBP22.28■■□□□ 1.16
UPF3A-202ENST00000375299 VCPIP1Q96JH7 1222 aa22.28■■□□□ 1.16
UPF3A-202ENST00000375299 PRMT6Q96LA8 375 aaPredicted RBP22.28■■□□□ 1.16
UPF3A-202ENST00000375299 ASB3Q9Y575 518 aa22.28■■□□□ 1.16
UPF3A-202ENST00000375299 WDR91A4D1P6 747 aa22.27■■□□□ 1.16
UPF3A-202ENST00000375299 KRT1P04264 644 aa22.27■■□□□ 1.16
UPF3A-202ENST00000375299 HMGB2P26583 209 aaKnown RBP22.27■■□□□ 1.16
UPF3A-202ENST00000375299 HSD17B4P51659 736 aa22.27■■□□□ 1.16
UPF3A-202ENST00000375299 INHBEP58166 350 aa22.27■■□□□ 1.16
UPF3A-202ENST00000375299 GPX6P59796 221 aa22.27■■□□□ 1.16
UPF3A-202ENST00000375299 NOP14P78316 857 aaKnown RBP22.27■■□□□ 1.16
UPF3A-202ENST00000375299 ENPEPQ07075 957 aa22.27■■□□□ 1.16
UPF3A-202ENST00000375299 ZC3H12AQ5D1E8 599 aaKnown RBP22.27■■□□□ 1.16
UPF3A-202ENST00000375299 C15orf39Q6ZRI6 1047 aa22.27■■□□□ 1.16
UPF3A-202ENST00000375299 NLRX1Q86UT6 975 aa22.27■■□□□ 1.16
UPF3A-202ENST00000375299 ZNF276Q8N554 614 aa22.27■■□□□ 1.16
UPF3A-202ENST00000375299 TEKT4Q8WW24 435 aa22.27■■□□□ 1.16
UPF3A-202ENST00000375299 KMT5AQ9NQR1 393 aa22.27■■□□□ 1.16
UPF3A-202ENST00000375299 ARL8BQ9NVJ2 186 aa22.27■■□□□ 1.16
UPF3A-202ENST00000375299 COL20A1Q9P218 1284 aa22.27■■□□□ 1.16
UPF3A-202ENST00000375299 ZNF219Q9P2Y4 722 aaPredicted RBP22.27■■□□□ 1.16
UPF3A-202ENST00000375299 FETUBQ9UGM5 382 aa22.27■■□□□ 1.16
UPF3A-202ENST00000375299 LRCH1Q9Y2L9 728 aa22.27■■□□□ 1.16
UPF3A-202ENST00000375299 OVGP1Q12889 678 aa22.27■■□□□ 1.16
UPF3A-202ENST00000375299 RCN1Q15293 331 aa22.27■■□□□ 1.16
UPF3A-202ENST00000375299 TKFCQ3LXA3 575 aa22.27■■□□□ 1.16
UPF3A-202ENST00000375299 ZFYVE27Q5T4F4 411 aa22.27■■□□□ 1.16
UPF3A-202ENST00000375299 MFSD7Q6UXD7 560 aa22.27■■□□□ 1.16
UPF3A-202ENST00000375299 PHF13Q86YI8 300 aaPredicted RBP22.27■■□□□ 1.16
UPF3A-202ENST00000375299 ANKMY2Q8IV38 441 aa22.27■■□□□ 1.16
UPF3A-202ENST00000375299 FEZF2Q8TBJ5 459 aa22.27■■□□□ 1.16
UPF3A-202ENST00000375299 DEFB129Q9H1M3 183 aa22.27■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms