RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 ENOSF1Q7L5Y1 443 aa16.55■□□□□ 0.24
CCDC40-202ENST00000374876 OTOP2Q7RTS6 562 aa16.55■□□□□ 0.24
CCDC40-202ENST00000374876 SEC14L1Q92503 715 aa16.55■□□□□ 0.24
CCDC40-202ENST00000374876 NEUROG2Q9H2A3 272 aa16.55■□□□□ 0.24
CCDC40-202ENST00000374876 ADAMTS10Q9H324 1103 aa16.55■□□□□ 0.24
CCDC40-202ENST00000374876 KIAA1586Q9HCI6 787 aa16.55■□□□□ 0.24
CCDC40-202ENST00000374876 COLQQ9Y215 455 aaPredicted RBP16.55■□□□□ 0.24
CCDC40-202ENST00000374876 GOLGA6L10A6NI86 522 aa16.55■□□□□ 0.24
CCDC40-202ENST00000374876 EXTL3O43909 919 aa16.55■□□□□ 0.24
CCDC40-202ENST00000374876 SRGAP2CP0DJJ0 459 aa16.55■□□□□ 0.24
CCDC40-202ENST00000374876 RFC2P35250 354 aa16.55■□□□□ 0.24
CCDC40-202ENST00000374876 HSD17B3P37058 310 aa16.55■□□□□ 0.24
CCDC40-202ENST00000374876 POU5F1Q01860 360 aaKnown RBP16.55■□□□□ 0.24
CCDC40-202ENST00000374876 LPIN1Q14693 890 aa16.55■□□□□ 0.24
CCDC40-202ENST00000374876 SHHQ15465 462 aa16.55■□□□□ 0.24
CCDC40-202ENST00000374876 FBXO47Q5MNV8 452 aa16.55■□□□□ 0.24
CCDC40-202ENST00000374876 TMEM240Q5SV17 173 aa16.55■□□□□ 0.24
CCDC40-202ENST00000374876 TAS1R3Q7RTX0 852 aa16.55■□□□□ 0.24
CCDC40-202ENST00000374876 DBF4BQ8NFT6 615 aa16.55■□□□□ 0.24
CCDC40-202ENST00000374876 ZNF564Q8TBZ8 553 aaPredicted RBP16.55■□□□□ 0.24
CCDC40-202ENST00000374876 NLRP7Q8WX94 980 aa16.55■□□□□ 0.24
CCDC40-202ENST00000374876 KRT35Q92764 455 aa16.55■□□□□ 0.24
CCDC40-202ENST00000374876 TATDN2Q93075 761 aa16.55■□□□□ 0.24
CCDC40-202ENST00000374876 ZNF653Q96CK0 615 aa16.55■□□□□ 0.24
CCDC40-202ENST00000374876 NLRP4Q96MN2 994 aa16.55■□□□□ 0.24
CCDC40-202ENST00000374876 NUP85Q9BW27 656 aa16.55■□□□□ 0.24
CCDC40-202ENST00000374876 DPH5Q9H2P9 285 aa16.55■□□□□ 0.24
CCDC40-202ENST00000374876 AGO3Q9H9G7 860 aaKnown RBP16.55■□□□□ 0.24
CCDC40-202ENST00000374876 C1orf112Q9NSG2 853 aa16.55■□□□□ 0.24
CCDC40-202ENST00000374876 TANC1Q9C0D5 1861 aa16.54■□□□□ 0.24
CCDC40-202ENST00000374876 A0A087WZ62 844 aa16.54■□□□□ 0.24
CCDC40-202ENST00000374876 ZC3H11AO75152 810 aaKnown RBP eCLIP16.54■□□□□ 0.24
CCDC40-202ENST00000374876 FGBP02675 491 aa16.54■□□□□ 0.24
CCDC40-202ENST00000374876 CXCL10P02778 98 aa16.54■□□□□ 0.24
CCDC40-202ENST00000374876 CYP1A2P05177 515 aa16.54■□□□□ 0.24
CCDC40-202ENST00000374876 RPLP2P05387 115 aaKnown RBP16.54■□□□□ 0.24
CCDC40-202ENST00000374876 IRAK1P51617 712 aa16.54■□□□□ 0.24
CCDC40-202ENST00000374876 GCNT1Q02742 428 aa16.54■□□□□ 0.24
CCDC40-202ENST00000374876 LAMTOR4Q0VGL1 99 aa16.54■□□□□ 0.24
CCDC40-202ENST00000374876 MTMR3Q13615 1198 aa16.54■□□□□ 0.24
CCDC40-202ENST00000374876 CEP85LQ5SZL2 805 aa16.54■□□□□ 0.24
CCDC40-202ENST00000374876 LRIG3Q6UXM1 1119 aa16.54■□□□□ 0.24
CCDC40-202ENST00000374876 SH2D3CQ8N5H7 860 aa16.54■□□□□ 0.24
CCDC40-202ENST00000374876 PSPC1Q8WXF1 523 aaKnown RBP16.54■□□□□ 0.24
CCDC40-202ENST00000374876 ELMO3Q96BJ8 720 aa16.54■□□□□ 0.24
CCDC40-202ENST00000374876 FAM81BQ96LP2 452 aa16.54■□□□□ 0.24
CCDC40-202ENST00000374876 SCLT1Q96NL6 688 aa16.54■□□□□ 0.24
CCDC40-202ENST00000374876 FNBP1Q96RU3 617 aa16.54■□□□□ 0.24
CCDC40-202ENST00000374876 FDXACB1Q9BRP7 624 aaPredicted RBP16.54■□□□□ 0.24
CCDC40-202ENST00000374876 PI4K2AQ9BTU6 479 aa16.54■□□□□ 0.24
CCDC40-202ENST00000374876 GTF3C4Q9UKN8 822 aa16.54■□□□□ 0.24
CCDC40-202ENST00000374876 SIP14410 1827 aa16.54■□□□□ 0.24
CCDC40-202ENST00000374876 A6NNZ2 444 aa16.53■□□□□ 0.24
CCDC40-202ENST00000374876 SPOPO43791 374 aa16.53■□□□□ 0.24
CCDC40-202ENST00000374876 PARNO95453 639 aaKnown RBP16.53■□□□□ 0.24
CCDC40-202ENST00000374876 CD52P31358 61 aa16.53■□□□□ 0.24
CCDC40-202ENST00000374876 BMP8BP34820 402 aa16.53■□□□□ 0.24
CCDC40-202ENST00000374876 CRYBB1P53674 252 aaPredicted RBP16.53■□□□□ 0.24
CCDC40-202ENST00000374876 DHX34Q14147 1143 aaKnown RBP16.53■□□□□ 0.24
CCDC40-202ENST00000374876 TUBB8Q3ZCM7 444 aa16.53■□□□□ 0.24
CCDC40-202ENST00000374876 SEL1L2Q5TEA6 688 aa16.53■□□□□ 0.24
CCDC40-202ENST00000374876 ASAP3Q8TDY4 903 aa16.53■□□□□ 0.24
CCDC40-202ENST00000374876 TCP11Q8WWU5 503 aa16.53■□□□□ 0.24
CCDC40-202ENST00000374876 TRIM51Q9BSJ1 452 aa16.53■□□□□ 0.24
CCDC40-202ENST00000374876 TRIM31Q9BZY9 425 aa16.53■□□□□ 0.24
CCDC40-202ENST00000374876 ERVK-5Q9HDB9 667 aa16.53■□□□□ 0.24
CCDC40-202ENST00000374876 UVRAGQ9P2Y5 699 aa16.53■□□□□ 0.24
CCDC40-202ENST00000374876 TNNI1P19237 187 aa16.53■□□□□ 0.24
CCDC40-202ENST00000374876 FGFR4P22455 802 aa16.53■□□□□ 0.24
CCDC40-202ENST00000374876 CTNNA1P35221 906 aaKnown RBP16.53■□□□□ 0.24
CCDC40-202ENST00000374876 ARL2P36404 184 aa16.53■□□□□ 0.24
CCDC40-202ENST00000374876 MARCKSL1P49006 195 aa16.53■□□□□ 0.24
CCDC40-202ENST00000374876 GNGT1P63211 74 aa16.53■□□□□ 0.24
CCDC40-202ENST00000374876 SKOR1P84550 965 aa16.53■□□□□ 0.24
CCDC40-202ENST00000374876 KCTD19Q17RG1 926 aaPredicted RBP16.53■□□□□ 0.24
CCDC40-202ENST00000374876 WDR44Q5JSH3 913 aa16.53■□□□□ 0.24
CCDC40-202ENST00000374876 ACAD10Q6JQN1 1059 aa16.53■□□□□ 0.24
CCDC40-202ENST00000374876 AADACL2Q6P093 401 aa16.53■□□□□ 0.24
CCDC40-202ENST00000374876 FOXR1Q6PIV2 292 aa16.53■□□□□ 0.24
CCDC40-202ENST00000374876 C1orf131Q8NDD1 294 aaKnown RBP16.53■□□□□ 0.24
CCDC40-202ENST00000374876 DEPTORQ8TB45 409 aa16.53■□□□□ 0.24
CCDC40-202ENST00000374876 DDX1Q92499 740 aaKnown RBP16.53■□□□□ 0.24
CCDC40-202ENST00000374876 ATP6V1G3Q96LB4 118 aa16.53■□□□□ 0.24
CCDC40-202ENST00000374876 PRO3102Q9H379 93 aa16.53■□□□□ 0.24
CCDC40-202ENST00000374876 LAMA3Q16787 3333 aa16.52■□□□□ 0.24
CCDC40-202ENST00000374876 FAM187AA6NFU0 413 aa16.52■□□□□ 0.24
CCDC40-202ENST00000374876 HMGB1P1B2RPK0 211 aaPredicted RBP16.52■□□□□ 0.24
CCDC40-202ENST00000374876 GAS2O43903 313 aaKnown RBP16.52■□□□□ 0.24
CCDC40-202ENST00000374876 MYZAPP0CAP1 466 aa16.52■□□□□ 0.24
CCDC40-202ENST00000374876 SCP2P22307 547 aa16.52■□□□□ 0.24
CCDC40-202ENST00000374876 GLRA2P23416 452 aa16.52■□□□□ 0.24
CCDC40-202ENST00000374876 PEX5P50542 639 aa16.52■□□□□ 0.24
CCDC40-202ENST00000374876 NFX1Q12986 1120 aaKnown RBP16.52■□□□□ 0.24
CCDC40-202ENST00000374876 PSMD6Q15008 389 aa16.52■□□□□ 0.24
CCDC40-202ENST00000374876 UAP1Q16222 522 aaPredicted RBP16.52■□□□□ 0.24
CCDC40-202ENST00000374876 PLEKHG4Q58EX7 1191 aa16.52■□□□□ 0.24
CCDC40-202ENST00000374876 RNF149Q8NC42 400 aa16.52■□□□□ 0.24
CCDC40-202ENST00000374876 UBLCP1Q8WVY7 318 aaPredicted RBP16.52■□□□□ 0.24
CCDC40-202ENST00000374876 ERP44Q9BS26 406 aa16.52■□□□□ 0.24
CCDC40-202ENST00000374876 SLTMQ9NWH9 1034 aaKnown RBP eCLIP16.52■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms