RNA–Protein interactions for RNA: ENST00000367253.8

SYNE1-206, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 5,189 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-206ENST00000367253 NEUROD4Q9HD90 331 aa9.03□□□□□ -0.96
SYNE1-206ENST00000367253 STX18Q9P2W9 335 aaKnown RBP9.03□□□□□ -0.96
SYNE1-206ENST00000367253 FAM47DPA6NHR8 397 aa9.03□□□□□ -0.96
SYNE1-206ENST00000367253 H7C0C1 242 aa9.03□□□□□ -0.96
SYNE1-206ENST00000367253 GYG2O15488 501 aa9.03□□□□□ -0.96
SYNE1-206ENST00000367253 TTI1O43156 1089 aa9.03□□□□□ -0.96
SYNE1-206ENST00000367253 AHCYL1O43865 530 aa9.03□□□□□ -0.96
SYNE1-206ENST00000367253 PNMA6AP0CW24 399 aaPredicted RBP9.03□□□□□ -0.96
SYNE1-206ENST00000367253 SLC2A3P11169 496 aa9.03□□□□□ -0.96
SYNE1-206ENST00000367253 HLA-DPA1P20036 260 aa9.03□□□□□ -0.96
SYNE1-206ENST00000367253 ATP5OP48047 213 aa9.03□□□□□ -0.96
SYNE1-206ENST00000367253 SCNN1BP51168 640 aa9.03□□□□□ -0.96
SYNE1-206ENST00000367253 YWHAGP61981 247 aaKnown RBP eCLIP9.03□□□□□ -0.96
SYNE1-206ENST00000367253 CBX3Q13185 183 aa9.03□□□□□ -0.96
SYNE1-206ENST00000367253 SV2CQ496J9 727 aa9.03□□□□□ -0.96
SYNE1-206ENST00000367253 DNAAF3Q8N9W5 541 aa9.03□□□□□ -0.96
SYNE1-206ENST00000367253 LSM14AQ8ND56 463 aaKnown RBP9.03□□□□□ -0.96
SYNE1-206ENST00000367253 C11orf84Q9BUA3 381 aaPredicted RBP9.03□□□□□ -0.96
SYNE1-206ENST00000367253 MRPS26Q9BYN8 205 aaKnown RBP9.03□□□□□ -0.96
SYNE1-206ENST00000367253 RANBP17Q9H2T7 1088 aaKnown RBP9.03□□□□□ -0.96
SYNE1-206ENST00000367253 ABHD16BQ9H3Z7 469 aa9.03□□□□□ -0.96
SYNE1-206ENST00000367253 GID8Q9NWU2 228 aa9.03□□□□□ -0.96
SYNE1-206ENST00000367253 ADAM21Q9UKJ8 722 aa9.03□□□□□ -0.96
SYNE1-206ENST00000367253 SALL3Q9BXA9 1300 aa9.03□□□□□ -0.96
SYNE1-206ENST00000367253 CFLARO15519 480 aa9.03□□□□□ -0.96
SYNE1-206ENST00000367253 ODC1P11926 461 aa9.03□□□□□ -0.96
SYNE1-206ENST00000367253 SERPINB1P30740 379 aa9.03□□□□□ -0.96
SYNE1-206ENST00000367253 GPC3P51654 580 aa9.03□□□□□ -0.96
SYNE1-206ENST00000367253 POU5F1Q01860 360 aaKnown RBP9.03□□□□□ -0.96
SYNE1-206ENST00000367253 CDH18Q13634 790 aa9.03□□□□□ -0.96
SYNE1-206ENST00000367253 CASP8Q14790 479 aa9.03□□□□□ -0.96
SYNE1-206ENST00000367253 SLFNL1Q499Z3 407 aa9.03□□□□□ -0.96
SYNE1-206ENST00000367253 PPM1KQ8N3J5 372 aa9.03□□□□□ -0.96
SYNE1-206ENST00000367253 H2AFZP0C0S5 128 aa9.02□□□□□ -0.96
SYNE1-206ENST00000367253 MBL2P11226 248 aaPredicted RBP9.02□□□□□ -0.96
SYNE1-206ENST00000367253 FPGSQ05932 587 aa9.02□□□□□ -0.96
SYNE1-206ENST00000367253 SPIRE1Q08AE8 756 aa9.02□□□□□ -0.96
SYNE1-206ENST00000367253 SUSD4Q5VX71 490 aa9.02□□□□□ -0.96
SYNE1-206ENST00000367253 ANGPTL8Q6UXH0 198 aa9.02□□□□□ -0.96
SYNE1-206ENST00000367253 H2AFVQ71UI9 128 aa9.02□□□□□ -0.96
SYNE1-206ENST00000367253 DIS3L2Q8IYB7 885 aaKnown RBP9.02□□□□□ -0.96
SYNE1-206ENST00000367253 PRMT6Q96LA8 375 aaPredicted RBP9.02□□□□□ -0.96
SYNE1-206ENST00000367253 GINS4Q9BRT9 223 aa9.02□□□□□ -0.96
SYNE1-206ENST00000367253 DNAJC17Q9NVM6 304 aaKnown RBP9.02□□□□□ -0.96
SYNE1-206ENST00000367253 ARHGAP26Q9UNA1 814 aa9.02□□□□□ -0.96
SYNE1-206ENST00000367253 GDAQ9Y2T3 454 aa9.02□□□□□ -0.96
SYNE1-206ENST00000367253 ADGRB2O60241 1585 aa9.02□□□□□ -0.97
SYNE1-206ENST00000367253 MST1RQ04912 1400 aa9.02□□□□□ -0.97
SYNE1-206ENST00000367253 PRR23AA6NEV1 266 aa9.02□□□□□ -0.97
SYNE1-206ENST00000367253 PHF20L1A8MW92 1017 aa9.02□□□□□ -0.97
SYNE1-206ENST00000367253 ZBTB7BO15156 539 aaPredicted RBP9.02□□□□□ -0.97
SYNE1-206ENST00000367253 RGS20O76081 388 aa9.02□□□□□ -0.97
SYNE1-206ENST00000367253 SEC24DO94855 1032 aaPredicted RBP9.02□□□□□ -0.97
SYNE1-206ENST00000367253 ATP5BP06576 529 aaKnown RBP9.02□□□□□ -0.97
SYNE1-206ENST00000367253 RPIAP49247 311 aa9.02□□□□□ -0.97
SYNE1-206ENST00000367253 NBPF12Q5TAG4 269 aaPredicted RBP9.02□□□□□ -0.97
SYNE1-206ENST00000367253 SAMD3Q8N6K7 520 aa9.02□□□□□ -0.97
SYNE1-206ENST00000367253 ASB12Q8WXK4 309 aa9.02□□□□□ -0.97
SYNE1-206ENST00000367253 CGRRF1Q99675 332 aa9.02□□□□□ -0.97
SYNE1-206ENST00000367253 WDR41Q9HAD4 459 aa9.02□□□□□ -0.97
SYNE1-206ENST00000367253 EPB41L5Q9HCM4 733 aa9.02□□□□□ -0.97
SYNE1-206ENST00000367253 ZNF304Q9HCX3 659 aa9.02□□□□□ -0.97
SYNE1-206ENST00000367253 POLMQ9NP87 494 aaPredicted RBP9.02□□□□□ -0.97
SYNE1-206ENST00000367253 VPS51Q9UID3 782 aa9.02□□□□□ -0.97
SYNE1-206ENST00000367253 RUVBL2Q9Y230 463 aaKnown RBP9.02□□□□□ -0.97
SYNE1-206ENST00000367253 EPN1Q9Y6I3 576 aaPredicted RBP9.02□□□□□ -0.97
SYNE1-206ENST00000367253 CCDC162PA2VCL2 907 aa9.02□□□□□ -0.97
SYNE1-206ENST00000367253 PSIP1O75475 530 aaKnown RBP9.02□□□□□ -0.97
SYNE1-206ENST00000367253 HIST1H2AGP0C0S8 130 aaPredicted RBP9.02□□□□□ -0.97
SYNE1-206ENST00000367253 PRKACAP17612 351 aa9.02□□□□□ -0.97
SYNE1-206ENST00000367253 HIST1H2ADP20671 130 aa9.02□□□□□ -0.97
SYNE1-206ENST00000367253 CTDSPL2Q05D32 466 aa9.02□□□□□ -0.97
SYNE1-206ENST00000367253 PPIL2Q13356 520 aa9.02□□□□□ -0.97
SYNE1-206ENST00000367253 KRR1Q13601 381 aaKnown RBP9.02□□□□□ -0.97
SYNE1-206ENST00000367253 ANO4Q32M45 955 aa9.02□□□□□ -0.97
SYNE1-206ENST00000367253 HERC6Q8IVU3 1022 aa9.02□□□□□ -0.97
SYNE1-206ENST00000367253 HIST1H2AHQ96KK5 128 aa9.02□□□□□ -0.97
SYNE1-206ENST00000367253 HIST1H2AJQ99878 128 aa9.02□□□□□ -0.97
SYNE1-206ENST00000367253 H2AFJQ9BTM1 129 aa9.02□□□□□ -0.97
SYNE1-206ENST00000367253 MRPL47Q9HD33 250 aaKnown RBP9.02□□□□□ -0.97
SYNE1-206ENST00000367253 VPS54Q9P1Q0 977 aa9.02□□□□□ -0.97
SYNE1-206ENST00000367253 CFAP73A6NFT4 308 aa9.02□□□□□ -0.97
SYNE1-206ENST00000367253 SLC15A5A6NIM6 579 aa9.02□□□□□ -0.97
SYNE1-206ENST00000367253 PSMD12O00232 456 aaPredicted RBP9.02□□□□□ -0.97
SYNE1-206ENST00000367253 MUSKO15146 869 aa9.02□□□□□ -0.97
SYNE1-206ENST00000367253 SPTLC1O15269 473 aa9.02□□□□□ -0.97
SYNE1-206ENST00000367253 COBLO75128 1261 aa9.02□□□□□ -0.97
SYNE1-206ENST00000367253 RHOBTB3O94955 611 aa9.02□□□□□ -0.97
SYNE1-206ENST00000367253 CDK8P49336 464 aa9.02□□□□□ -0.97
SYNE1-206ENST00000367253 MDM2Q00987 491 aaPredicted RBP9.02□□□□□ -0.97
SYNE1-206ENST00000367253 AKIRIN2Q53H80 203 aa9.02□□□□□ -0.97
SYNE1-206ENST00000367253 NUGGCQ68CJ6 796 aa9.02□□□□□ -0.97
SYNE1-206ENST00000367253 KLC3Q6P597 504 aa9.02□□□□□ -0.97
SYNE1-206ENST00000367253 FAM180AQ6UWF9 173 aa9.02□□□□□ -0.97
SYNE1-206ENST00000367253 KIAA1324Q6UXG2 1013 aaKnown RBP9.02□□□□□ -0.97
SYNE1-206ENST00000367253 UNC45BQ8IWX7 931 aa9.02□□□□□ -0.97
SYNE1-206ENST00000367253 CATSPER1Q8NEC5 780 aa9.02□□□□□ -0.97
SYNE1-206ENST00000367253 RASSF5Q8WWW0 418 aa9.02□□□□□ -0.97
SYNE1-206ENST00000367253 ARHGEF26Q96DR7 871 aa9.02□□□□□ -0.97
SYNE1-206ENST00000367253 PPP1R2P1Q96PQ5 205 aa9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms