RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 HLA-DRAP01903 254 aa7.69□□□□□ -1.18
VPS13A-202ENST00000357409 MARSP56192 900 aaKnown RBP7.69□□□□□ -1.18
VPS13A-202ENST00000357409 CXCL9Q07325 125 aa7.69□□□□□ -1.18
VPS13A-202ENST00000357409 KCNB1Q14721 858 aa7.69□□□□□ -1.18
VPS13A-202ENST00000357409 MEI1Q5TIA1 1274 aa7.69□□□□□ -1.18
VPS13A-202ENST00000357409 TNIP3Q96KP6 325 aa7.69□□□□□ -1.18
VPS13A-202ENST00000357409 ZC4H2Q9NQZ6 224 aa7.69□□□□□ -1.18
VPS13A-202ENST00000357409 IP6K2Q9UHH9 426 aa7.69□□□□□ -1.18
VPS13A-202ENST00000357409 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP7.69□□□□□ -1.18
VPS13A-202ENST00000357409 ORC4O43929 436 aa7.69□□□□□ -1.18
VPS13A-202ENST00000357409 ABCG1P45844 678 aa7.69□□□□□ -1.18
VPS13A-202ENST00000357409 PRKCQQ04759 706 aa7.69□□□□□ -1.18
VPS13A-202ENST00000357409 ZNF177Q13360 481 aaPredicted RBP7.69□□□□□ -1.18
VPS13A-202ENST00000357409 MIIPQ5JXC2 388 aa7.69□□□□□ -1.18
VPS13A-202ENST00000357409 BBS2Q9BXC9 721 aa7.69□□□□□ -1.18
VPS13A-202ENST00000357409 DDX43Q9NXZ2 648 aaKnown RBP7.69□□□□□ -1.18
VPS13A-202ENST00000357409 RCOR1Q9UKL0 485 aa7.69□□□□□ -1.18
VPS13A-202ENST00000357409 CNTNAP2Q9UHC6 1331 aa7.69□□□□□ -1.18
VPS13A-202ENST00000357409 TTI1O43156 1089 aa7.69□□□□□ -1.18
VPS13A-202ENST00000357409 ENO2P09104 434 aaPredicted RBP7.69□□□□□ -1.18
VPS13A-202ENST00000357409 CNTN2Q02246 1040 aa7.69□□□□□ -1.18
VPS13A-202ENST00000357409 STKLD1Q8NE28 680 aa7.69□□□□□ -1.18
VPS13A-202ENST00000357409 HPDLQ96IR7 371 aa7.69□□□□□ -1.18
VPS13A-202ENST00000357409 TEX13BQ9BXU2 312 aa7.69□□□□□ -1.18
VPS13A-202ENST00000357409 ABCC12Q96J65 1359 aa7.69□□□□□ -1.18
VPS13A-202ENST00000357409 SLC37A4O43826 429 aa7.69□□□□□ -1.18
VPS13A-202ENST00000357409 CST8O60676 142 aa7.69□□□□□ -1.18
VPS13A-202ENST00000357409 PIAS1O75925 651 aa7.69□□□□□ -1.18
VPS13A-202ENST00000357409 DSG3P32926 999 aa7.69□□□□□ -1.18
VPS13A-202ENST00000357409 DENND5BQ6ZUT9 1274 aa7.69□□□□□ -1.18
VPS13A-202ENST00000357409 BZW1Q7L1Q6 419 aaKnown RBP7.69□□□□□ -1.18
VPS13A-202ENST00000357409 CCDC51Q96ER9 411 aa7.69□□□□□ -1.18
VPS13A-202ENST00000357409 PBKQ96KB5 322 aa7.69□□□□□ -1.18
VPS13A-202ENST00000357409 THAP9Q9H5L6 903 aa7.69□□□□□ -1.18
VPS13A-202ENST00000357409 KIAA1586Q9HCI6 787 aa7.69□□□□□ -1.18
VPS13A-202ENST00000357409 KCNH7Q9NS40 1196 aa7.69□□□□□ -1.18
VPS13A-202ENST00000357409 CAPN1P07384 714 aa7.69□□□□□ -1.18
VPS13A-202ENST00000357409 MORF4L2Q15014 288 aa7.69□□□□□ -1.18
VPS13A-202ENST00000357409 PRUNE1Q86TP1 453 aa7.69□□□□□ -1.18
VPS13A-202ENST00000357409 MXRA8Q9BRK3 442 aa7.69□□□□□ -1.18
VPS13A-202ENST00000357409 IARS2Q9NSE4 1012 aaKnown RBP7.69□□□□□ -1.18
VPS13A-202ENST00000357409 GEMIN8Q9NWZ8 242 aaKnown RBP7.69□□□□□ -1.18
VPS13A-202ENST00000357409 STX18Q9P2W9 335 aaKnown RBP7.69□□□□□ -1.18
VPS13A-202ENST00000357409 NDRG2Q9UN36 371 aaKnown RBP7.69□□□□□ -1.18
VPS13A-202ENST00000357409 IMPDH2P12268 514 aa7.69□□□□□ -1.18
VPS13A-202ENST00000357409 SMARCA1P28370 1054 aa7.69□□□□□ -1.18
VPS13A-202ENST00000357409 FAM71DQ8N9W8 422 aa7.69□□□□□ -1.18
VPS13A-202ENST00000357409 NEK9Q8TD19 979 aa7.69□□□□□ -1.18
VPS13A-202ENST00000357409 BCAP29Q9UHQ4 241 aa7.69□□□□□ -1.18
VPS13A-202ENST00000357409 SLC9A8Q9Y2E8 581 aa7.69□□□□□ -1.18
VPS13A-202ENST00000357409 AKAP10O43572 662 aa7.69□□□□□ -1.18
VPS13A-202ENST00000357409 ACRP10323 421 aa7.69□□□□□ -1.18
VPS13A-202ENST00000357409 CETPP11597 493 aa7.69□□□□□ -1.18
VPS13A-202ENST00000357409 SREBF2Q12772 1141 aa7.69□□□□□ -1.18
VPS13A-202ENST00000357409 SNCBQ16143 134 aa7.69□□□□□ -1.18
VPS13A-202ENST00000357409 ACAD11Q709F0 780 aa7.69□□□□□ -1.18
VPS13A-202ENST00000357409 ASZ1Q8WWH4 475 aa7.69□□□□□ -1.18
VPS13A-202ENST00000357409 PARK7Q99497 189 aaKnown RBP7.69□□□□□ -1.18
VPS13A-202ENST00000357409 OSBPL10Q9BXB5 764 aa7.69□□□□□ -1.18
VPS13A-202ENST00000357409 ZFATQ9P243 1243 aa7.69□□□□□ -1.18
VPS13A-202ENST00000357409 CRLS1Q9UJA2 301 aa7.69□□□□□ -1.18
VPS13A-202ENST00000357409 TSPOAP1O95153 1857 aa7.69□□□□□ -1.18
VPS13A-202ENST00000357409 ZNF263O14978 683 aa7.69□□□□□ -1.18
VPS13A-202ENST00000357409 TRAPPC3O43617 180 aa7.69□□□□□ -1.18
VPS13A-202ENST00000357409 MCF2P10911 925 aa7.69□□□□□ -1.18
VPS13A-202ENST00000357409 ORC2Q13416 577 aaPredicted RBP7.69□□□□□ -1.18
VPS13A-202ENST00000357409 SETD3Q86TU7 594 aaPredicted RBP7.69□□□□□ -1.18
VPS13A-202ENST00000357409 EFCAB5A4FU69 1503 aa7.69□□□□□ -1.18
VPS13A-202ENST00000357409 ARHGEF37A1IGU5 675 aa7.68□□□□□ -1.18
VPS13A-202ENST00000357409 MAPK13O15264 365 aa7.68□□□□□ -1.18
VPS13A-202ENST00000357409 CKBP12277 381 aa7.68□□□□□ -1.18
VPS13A-202ENST00000357409 NR1D1P20393 614 aa7.68□□□□□ -1.18
VPS13A-202ENST00000357409 GALCP54803 685 aa7.68□□□□□ -1.18
VPS13A-202ENST00000357409 STK4Q13043 487 aa7.68□□□□□ -1.18
VPS13A-202ENST00000357409 MADCAM1Q13477 382 aa7.68□□□□□ -1.18
VPS13A-202ENST00000357409 EMC2Q15006 297 aa7.68□□□□□ -1.18
VPS13A-202ENST00000357409 AP5B1Q2VPB7 878 aa7.68□□□□□ -1.18
VPS13A-202ENST00000357409 CEP55Q53EZ4 464 aa7.68□□□□□ -1.18
VPS13A-202ENST00000357409 COMMD2Q86X83 199 aa7.68□□□□□ -1.18
VPS13A-202ENST00000357409 ZMYND8Q9ULU4 1186 aaPredicted RBP7.68□□□□□ -1.18
VPS13A-202ENST00000357409 LAD1O00515 517 aa7.68□□□□□ -1.18
VPS13A-202ENST00000357409 SYNCRIPO60506 623 aaKnown RBP7.68□□□□□ -1.18
VPS13A-202ENST00000357409 SCNN1BP51168 640 aa7.68□□□□□ -1.18
VPS13A-202ENST00000357409 MDM2Q00987 491 aaPredicted RBP7.68□□□□□ -1.18
VPS13A-202ENST00000357409 H2AFY2Q9P0M6 372 aaPredicted RBP7.68□□□□□ -1.18
VPS13A-202ENST00000357409 LTFP02788 710 aa7.68□□□□□ -1.18
VPS13A-202ENST00000357409 HNRNPCP07910 306 aaKnown RBP eCLIP7.68□□□□□ -1.18
VPS13A-202ENST00000357409 VEGFAP15692 232 aaPredicted RBP7.68□□□□□ -1.18
VPS13A-202ENST00000357409 SKIV2L2P42285 1042 aaKnown RBP7.68□□□□□ -1.18
VPS13A-202ENST00000357409 ARHGAP25P42331 645 aa7.68□□□□□ -1.18
VPS13A-202ENST00000357409 RAP1GDS1P52306 607 aa7.68□□□□□ -1.18
VPS13A-202ENST00000357409 P3H1Q32P28 736 aa7.68□□□□□ -1.18
VPS13A-202ENST00000357409 TRIM11Q96F44 468 aa7.68□□□□□ -1.18
VPS13A-202ENST00000357409 FAM20AQ96MK3 541 aa7.68□□□□□ -1.18
VPS13A-202ENST00000357409 C17orf80Q9BSJ5 609 aa7.68□□□□□ -1.18
VPS13A-202ENST00000357409 DMAP1Q9NPF5 467 aaPredicted RBP7.68□□□□□ -1.18
VPS13A-202ENST00000357409 ARHGEF38Q9NXL2 777 aa7.68□□□□□ -1.18
VPS13A-202ENST00000357409 ZMYM5Q9UJ78 669 aa7.68□□□□□ -1.18
VPS13A-202ENST00000357409 JRKLQ9Y4A0 524 aa7.68□□□□□ -1.18
VPS13A-202ENST00000357409 TBC1D3BA6NDS4 549 aa7.68□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms