RNA–Protein interactions for RNA: ENST00000357250.10

COL9A1-202, Transcript of collagen type IX alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A1, Length 4,761 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-202ENST00000357250 DCAF4L1Q3SXM0 396 aa12.29□□□□□ -0.44
COL9A1-202ENST00000357250 GRAMD4Q6IC98 578 aa12.29□□□□□ -0.44
COL9A1-202ENST00000357250 KDM7AQ6ZMT4 941 aa12.29□□□□□ -0.44
COL9A1-202ENST00000357250 LINC00523Q86TU6 105 aa12.29□□□□□ -0.44
COL9A1-202ENST00000357250 TEX9Q8N6V9 391 aa12.29□□□□□ -0.44
COL9A1-202ENST00000357250 SPATA18Q8TC71 538 aa12.29□□□□□ -0.44
COL9A1-202ENST00000357250 TMC2Q8TDI7 906 aa12.29□□□□□ -0.44
COL9A1-202ENST00000357250 C9orf72Q96LT7 481 aa12.29□□□□□ -0.44
COL9A1-202ENST00000357250 VPS9D1Q9Y2B5 631 aa12.29□□□□□ -0.44
COL9A1-202ENST00000357250 C16orf96A6NNT2 1141 aa12.29□□□□□ -0.44
COL9A1-202ENST00000357250 TNPO2O14787 897 aaKnown RBP12.29□□□□□ -0.44
COL9A1-202ENST00000357250 ICAM1P05362 532 aa12.29□□□□□ -0.44
COL9A1-202ENST00000357250 RPLP2P05387 115 aaKnown RBP12.29□□□□□ -0.44
COL9A1-202ENST00000357250 MCL1Q07820 350 aa12.29□□□□□ -0.44
COL9A1-202ENST00000357250 LAMC2Q13753 1193 aa12.29□□□□□ -0.44
COL9A1-202ENST00000357250 EARS2Q5JPH6 523 aaKnown RBP12.29□□□□□ -0.44
COL9A1-202ENST00000357250 CAPRIN2Q6IMN6 1127 aaKnown RBP12.29□□□□□ -0.44
COL9A1-202ENST00000357250 DDIASQ8IXT1 998 aa12.29□□□□□ -0.44
COL9A1-202ENST00000357250 TBX20Q9UMR3 447 aa12.29□□□□□ -0.44
COL9A1-202ENST00000357250 TMEM120BA0PK00 339 aa12.28□□□□□ -0.44
COL9A1-202ENST00000357250 CCT8L1PA6NM43 557 aa12.28□□□□□ -0.44
COL9A1-202ENST00000357250 DFFAO00273 331 aa12.28□□□□□ -0.44
COL9A1-202ENST00000357250 EEF2KO00418 725 aaKnown RBP12.28□□□□□ -0.44
COL9A1-202ENST00000357250 KIF1CO43896 1103 aaKnown RBP12.28□□□□□ -0.44
COL9A1-202ENST00000357250 CYBBP04839 570 aa12.28□□□□□ -0.44
COL9A1-202ENST00000357250 SREBF1P36956 1147 aa12.28□□□□□ -0.44
COL9A1-202ENST00000357250 HADHAP40939 763 aa12.28□□□□□ -0.44
COL9A1-202ENST00000357250 CARSP49589 748 aaKnown RBP12.28□□□□□ -0.44
COL9A1-202ENST00000357250 GRB10Q13322 594 aa12.28□□□□□ -0.44
COL9A1-202ENST00000357250 LBRQ14739 615 aaKnown RBP12.28□□□□□ -0.44
COL9A1-202ENST00000357250 MTFR1Q15390 333 aa12.28□□□□□ -0.44
COL9A1-202ENST00000357250 MAPRE1Q15691 268 aaKnown RBP12.28□□□□□ -0.44
COL9A1-202ENST00000357250 NTRK3Q16288 839 aa12.28□□□□□ -0.44
COL9A1-202ENST00000357250 GANCQ8TET4 914 aa12.28□□□□□ -0.44
COL9A1-202ENST00000357250 APBB2Q92870 758 aa12.28□□□□□ -0.44
COL9A1-202ENST00000357250 PARK7Q99497 189 aaKnown RBP12.28□□□□□ -0.44
COL9A1-202ENST00000357250 OSBPL1AQ9BXW6 950 aa12.28□□□□□ -0.44
COL9A1-202ENST00000357250 CYP4F11Q9HBI6 524 aa12.28□□□□□ -0.44
COL9A1-202ENST00000357250 ARHGEF38Q9NXL2 777 aa12.28□□□□□ -0.44
COL9A1-202ENST00000357250 BLOC1S6Q9UL45 172 aa12.28□□□□□ -0.44
COL9A1-202ENST00000357250 DDTLA6NHG4 134 aaPredicted RBP12.28□□□□□ -0.44
COL9A1-202ENST00000357250 NEMP1O14524 444 aa12.28□□□□□ -0.44
COL9A1-202ENST00000357250 DDR1Q08345 913 aa12.28□□□□□ -0.44
COL9A1-202ENST00000357250 ILF2Q12905 390 aaKnown RBP12.28□□□□□ -0.44
COL9A1-202ENST00000357250 MED21Q13503 144 aa12.28□□□□□ -0.44
COL9A1-202ENST00000357250 PTK6Q13882 451 aa12.28□□□□□ -0.44
COL9A1-202ENST00000357250 CENPPQ6IPU0 288 aa12.28□□□□□ -0.44
COL9A1-202ENST00000357250 LRRC8EQ6NSJ5 796 aa12.28□□□□□ -0.44
COL9A1-202ENST00000357250 LRRC8BQ6P9F7 803 aa12.28□□□□□ -0.44
COL9A1-202ENST00000357250 TAS2R42Q7RTR8 314 aa12.28□□□□□ -0.44
COL9A1-202ENST00000357250 APLFQ8IW19 511 aaPredicted RBP12.28□□□□□ -0.44
COL9A1-202ENST00000357250 LZICQ8WZA0 190 aa12.28□□□□□ -0.44
COL9A1-202ENST00000357250 PTPRN2Q92932 1015 aa12.28□□□□□ -0.44
COL9A1-202ENST00000357250 SARS2Q9NP81 518 aaKnown RBP12.28□□□□□ -0.44
COL9A1-202ENST00000357250 LRRC4BQ9NT99 713 aa12.28□□□□□ -0.44
COL9A1-202ENST00000357250 NDFIP2Q9NV92 336 aa12.28□□□□□ -0.44
COL9A1-202ENST00000357250 KIF17Q9P2E2 1029 aa12.28□□□□□ -0.44
COL9A1-202ENST00000357250 LSM7Q9UK45 103 aaKnown RBP12.28□□□□□ -0.44
COL9A1-202ENST00000357250 TRAF3IP3Q9Y228 551 aa12.28□□□□□ -0.44
COL9A1-202ENST00000357250 NWD1Q149M9 1564 aa12.28□□□□□ -0.44
COL9A1-202ENST00000357250 CST8O60676 142 aa12.28□□□□□ -0.44
COL9A1-202ENST00000357250 WEE2P0C1S8 567 aa12.28□□□□□ -0.44
COL9A1-202ENST00000357250 ITGA8P53708 1063 aa12.28□□□□□ -0.44
COL9A1-202ENST00000357250 TMED1Q13445 227 aa12.28□□□□□ -0.44
COL9A1-202ENST00000357250 SEC23AQ15436 765 aa12.28□□□□□ -0.44
COL9A1-202ENST00000357250 LONRF1Q17RB8 773 aa12.28□□□□□ -0.44
COL9A1-202ENST00000357250 HABP4Q5JVS0 413 aaKnown RBP12.28□□□□□ -0.44
COL9A1-202ENST00000357250 GPAT2Q6NUI2 795 aa12.28□□□□□ -0.44
COL9A1-202ENST00000357250 TTI2Q6NXR4 508 aa12.28□□□□□ -0.44
COL9A1-202ENST00000357250 TRIM65Q6PJ69 517 aa12.28□□□□□ -0.44
COL9A1-202ENST00000357250 SH2D3CQ8N5H7 860 aa12.28□□□□□ -0.44
COL9A1-202ENST00000357250 ACTRT1Q8TDG2 376 aa12.28□□□□□ -0.44
COL9A1-202ENST00000357250 ABTB1Q969K4 478 aaPredicted RBP12.28□□□□□ -0.44
COL9A1-202ENST00000357250 CYFIP2Q96F07 1278 aa12.28□□□□□ -0.44
COL9A1-202ENST00000357250 RTFDC1Q9BY42 306 aaPredicted RBP12.28□□□□□ -0.44
COL9A1-202ENST00000357250 GOLPH3Q9H4A6 298 aa12.28□□□□□ -0.44
COL9A1-202ENST00000357250 CCDC134Q9H6E4 229 aa12.28□□□□□ -0.44
COL9A1-202ENST00000357250 PKD2L2Q9NZM6 624 aa12.28□□□□□ -0.44
COL9A1-202ENST00000357250 GOLGA8TH3BQL2 631 aa12.27□□□□□ -0.44
COL9A1-202ENST00000357250 HIST1H2AGP0C0S8 130 aaPredicted RBP12.27□□□□□ -0.44
COL9A1-202ENST00000357250 MYL2P10916 166 aa12.27□□□□□ -0.44
COL9A1-202ENST00000357250 HIST1H2ADP20671 130 aa12.27□□□□□ -0.44
COL9A1-202ENST00000357250 SERPINB10P48595 397 aa12.27□□□□□ -0.44
COL9A1-202ENST00000357250 AASDHQ4L235 1098 aaPredicted RBP12.27□□□□□ -0.44
COL9A1-202ENST00000357250 ZC2HC1CQ53FD0 456 aaPredicted RBP12.27□□□□□ -0.44
COL9A1-202ENST00000357250 CDKAL1Q5VV42 579 aa12.27□□□□□ -0.44
COL9A1-202ENST00000357250 C3orf62Q6ZUJ4 267 aa12.27□□□□□ -0.44
COL9A1-202ENST00000357250 GMCL1Q96IK5 515 aa12.27□□□□□ -0.44
COL9A1-202ENST00000357250 HIST1H2AHQ96KK5 128 aa12.27□□□□□ -0.44
COL9A1-202ENST00000357250 HIST1H2AJQ99878 128 aa12.27□□□□□ -0.44
COL9A1-202ENST00000357250 H2AFJQ9BTM1 129 aa12.27□□□□□ -0.44
COL9A1-202ENST00000357250 WHRNQ9P202 907 aa12.27□□□□□ -0.44
COL9A1-202ENST00000357250 ZBBXA8MT70 800 aa12.27□□□□□ -0.44
COL9A1-202ENST00000357250 MSH4O15457 936 aa12.27□□□□□ -0.44
COL9A1-202ENST00000357250 MAPTP10636 758 aaKnown RBP12.27□□□□□ -0.44
COL9A1-202ENST00000357250 VEGFAP15692 232 aaPredicted RBP12.27□□□□□ -0.44
COL9A1-202ENST00000357250 HMOX2P30519 316 aa12.27□□□□□ -0.44
COL9A1-202ENST00000357250 GEMIN4P57678 1058 aaKnown RBP12.27□□□□□ -0.44
COL9A1-202ENST00000357250 ACTN3Q08043 901 aaPredicted RBP12.27□□□□□ -0.44
COL9A1-202ENST00000357250 USP10Q14694 798 aaKnown RBP12.27□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms