RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 FGFR3P22607 806 aa4.31□□□□□ -1.72
LIG4-201ENST00000356922 CASP14P31944 242 aa4.31□□□□□ -1.72
LIG4-201ENST00000356922 RPL9P32969 192 aaKnown RBP4.31□□□□□ -1.72
LIG4-201ENST00000356922 CA8P35219 290 aa4.31□□□□□ -1.72
LIG4-201ENST00000356922 CTNNB1P35222 781 aa4.31□□□□□ -1.72
LIG4-201ENST00000356922 ERVK-21P61565 698 aa4.31□□□□□ -1.72
LIG4-201ENST00000356922 TBX2Q13207 712 aaPredicted RBP4.31□□□□□ -1.72
LIG4-201ENST00000356922 TRPC3Q13507 836 aa4.31□□□□□ -1.72
LIG4-201ENST00000356922 MRPL58Q14197 206 aaKnown RBP4.31□□□□□ -1.72
LIG4-201ENST00000356922 KYAT1Q16773 422 aa4.31□□□□□ -1.72
LIG4-201ENST00000356922 SGSM1Q2NKQ1 1148 aa4.31□□□□□ -1.72
LIG4-201ENST00000356922 LRIT3Q3SXY7 679 aa4.31□□□□□ -1.72
LIG4-201ENST00000356922 WDR59Q6PJI9 974 aa4.31□□□□□ -1.72
LIG4-201ENST00000356922 RBM23Q86U06 439 aaKnown RBP4.31□□□□□ -1.72
LIG4-201ENST00000356922 SLC47A2Q86VL8 602 aa4.31□□□□□ -1.72
LIG4-201ENST00000356922 URGCPQ8TCY9 931 aa4.31□□□□□ -1.72
LIG4-201ENST00000356922 CACTINQ8WUQ7 758 aaKnown RBP4.31□□□□□ -1.72
LIG4-201ENST00000356922 POF1BQ8WVV4 589 aa4.31□□□□□ -1.72
LIG4-201ENST00000356922 DDX27Q96GQ7 796 aaKnown RBP4.31□□□□□ -1.72
LIG4-201ENST00000356922 FAM193BQ96PV7 902 aaPredicted RBP4.31□□□□□ -1.72
LIG4-201ENST00000356922 PRDM12Q9H4Q4 367 aa4.31□□□□□ -1.72
LIG4-201ENST00000356922 VRTNQ9H8Y1 702 aa4.31□□□□□ -1.72
LIG4-201ENST00000356922 CRTAC1Q9NQ79 661 aa4.31□□□□□ -1.72
LIG4-201ENST00000356922 CISHQ9NSE2 258 aa4.31□□□□□ -1.72
LIG4-201ENST00000356922 GTF3C4Q9UKN8 822 aa4.31□□□□□ -1.72
LIG4-201ENST00000356922 NLRC5Q86WI3 1866 aa4.31□□□□□ -1.72
LIG4-201ENST00000356922 GOLGA6L3A6NEY3 463 aa4.31□□□□□ -1.72
LIG4-201ENST00000356922 CYP26A1O43174 497 aa4.31□□□□□ -1.72
LIG4-201ENST00000356922 FGFR1OPO95684 399 aaKnown RBP4.31□□□□□ -1.72
LIG4-201ENST00000356922 SKILP12757 684 aa4.31□□□□□ -1.72
LIG4-201ENST00000356922 TAF6P49848 677 aa4.31□□□□□ -1.72
LIG4-201ENST00000356922 NDST1P52848 882 aa4.31□□□□□ -1.72
LIG4-201ENST00000356922 RAD23BP54727 409 aa4.31□□□□□ -1.72
LIG4-201ENST00000356922 JAM2P57087 298 aa4.31□□□□□ -1.72
LIG4-201ENST00000356922 CUL2Q13617 745 aa4.31□□□□□ -1.72
LIG4-201ENST00000356922 DRAP1Q14919 205 aaPredicted RBP4.31□□□□□ -1.72
LIG4-201ENST00000356922 VARS2Q5ST30 1063 aaKnown RBP4.31□□□□□ -1.72
LIG4-201ENST00000356922 PPP2R2DQ66LE6 453 aa4.31□□□□□ -1.72
LIG4-201ENST00000356922 GBP6Q6ZN66 633 aa4.31□□□□□ -1.72
LIG4-201ENST00000356922 IRF2BP2Q7Z5L9 587 aa4.31□□□□□ -1.72
LIG4-201ENST00000356922 ACOT1Q86TX2 421 aa4.31□□□□□ -1.72
LIG4-201ENST00000356922 VSTM4Q8IW00 320 aa4.31□□□□□ -1.72
LIG4-201ENST00000356922 FAM114A1Q8IWE2 563 aa4.31□□□□□ -1.72
LIG4-201ENST00000356922 HACE1Q8IYU2 909 aa4.31□□□□□ -1.72
LIG4-201ENST00000356922 LRRC52Q8N7C0 313 aa4.31□□□□□ -1.72
LIG4-201ENST00000356922 TIFAQ96CG3 184 aa4.31□□□□□ -1.72
LIG4-201ENST00000356922 SUSD3Q96L08 255 aa4.31□□□□□ -1.72
LIG4-201ENST00000356922 ZNF558Q96NG5 402 aa4.31□□□□□ -1.72
LIG4-201ENST00000356922 PGLYRP2Q96PD5 576 aa4.31□□□□□ -1.72
LIG4-201ENST00000356922 PKMYT1Q99640 499 aa4.31□□□□□ -1.72
LIG4-201ENST00000356922 ZNF576Q9H609 170 aa4.31□□□□□ -1.72
LIG4-201ENST00000356922 SLC28A3Q9HAS3 691 aa4.31□□□□□ -1.72
LIG4-201ENST00000356922 SLC38A7Q9NVC3 462 aa4.31□□□□□ -1.72
LIG4-201ENST00000356922 APEX2Q9UBZ4 518 aa4.31□□□□□ -1.72
LIG4-201ENST00000356922 GTPBP10A4D1E9 387 aaKnown RBP4.31□□□□□ -1.72
LIG4-201ENST00000356922 C5orf67F2Z3F1 127 aa4.31□□□□□ -1.72
LIG4-201ENST00000356922 HOXA2O43364 376 aa4.31□□□□□ -1.72
LIG4-201ENST00000356922 CNPP09543 421 aaKnown RBP4.31□□□□□ -1.72
LIG4-201ENST00000356922 PGFP49763 221 aa4.31□□□□□ -1.72
LIG4-201ENST00000356922 TPM4P67936 248 aa4.31□□□□□ -1.72
LIG4-201ENST00000356922 ARID5AQ03989 594 aa4.31□□□□□ -1.72
LIG4-201ENST00000356922 RAPGEF1Q13905 1077 aa4.31□□□□□ -1.72
LIG4-201ENST00000356922 SURF1Q15526 300 aa4.31□□□□□ -1.72
LIG4-201ENST00000356922 C2CD6Q53TS8 623 aa4.31□□□□□ -1.72
LIG4-201ENST00000356922 POTEHQ6S545 545 aa4.31□□□□□ -1.72
LIG4-201ENST00000356922 APBB1IPQ7Z5R6 666 aaPredicted RBP4.31□□□□□ -1.72
LIG4-201ENST00000356922 NT5DC4Q86YG4 428 aa4.31□□□□□ -1.72
LIG4-201ENST00000356922 SLC4A11Q8NBS3 891 aa4.31□□□□□ -1.72
LIG4-201ENST00000356922 ATAD1Q8NBU5 361 aa4.31□□□□□ -1.72
LIG4-201ENST00000356922 VN1R2Q8NFZ6 395 aa4.31□□□□□ -1.72
LIG4-201ENST00000356922 GPR152Q8TDT2 470 aa4.31□□□□□ -1.72
LIG4-201ENST00000356922 SLC20A1Q8WUM9 679 aa4.31□□□□□ -1.72
LIG4-201ENST00000356922 CHP1Q99653 195 aa4.31□□□□□ -1.72
LIG4-201ENST00000356922 MRPL9Q9BYD2 267 aaKnown RBP4.31□□□□□ -1.72
LIG4-201ENST00000356922 PLCB1Q9NQ66 1216 aa4.31□□□□□ -1.72
LIG4-201ENST00000356922 SPG21Q9NZD8 308 aa4.31□□□□□ -1.72
LIG4-201ENST00000356922 STXBP5LQ9Y2K9 1186 aa4.31□□□□□ -1.72
LIG4-201ENST00000356922 TTC28Q96AY4 2481 aa4.31□□□□□ -1.72
LIG4-201ENST00000356922 A0A0U1RQJ8 604 aa4.31□□□□□ -1.72
LIG4-201ENST00000356922 H3BNC9 293 aa4.31□□□□□ -1.72
LIG4-201ENST00000356922 TMEM189-UBE2V1I3L0A0 370 aa4.31□□□□□ -1.72
LIG4-201ENST00000356922 TEX28O15482 410 aa4.31□□□□□ -1.72
LIG4-201ENST00000356922 CILPO75339 1184 aa4.31□□□□□ -1.72
LIG4-201ENST00000356922 OAZ2O95190 189 aa4.31□□□□□ -1.72
LIG4-201ENST00000356922 GPR15P49685 360 aa4.31□□□□□ -1.72
LIG4-201ENST00000356922 PLCB3Q01970 1234 aa4.31□□□□□ -1.72
LIG4-201ENST00000356922 ENPEPQ07075 957 aa4.31□□□□□ -1.72
LIG4-201ENST00000356922 PDE4CQ08493 712 aa4.31□□□□□ -1.72
LIG4-201ENST00000356922 ZNF667Q5HYK9 610 aa4.31□□□□□ -1.72
LIG4-201ENST00000356922 PRPF38BQ5VTL8 546 aaKnown RBP4.31□□□□□ -1.72
LIG4-201ENST00000356922 HGSNATQ68CP4 663 aa4.31□□□□□ -1.72
LIG4-201ENST00000356922 TMEM270Q6UE05 265 aa4.31□□□□□ -1.72
LIG4-201ENST00000356922 DSTYKQ6XUX3 929 aa4.31□□□□□ -1.72
LIG4-201ENST00000356922 RNF19BQ6ZMZ0 732 aa4.31□□□□□ -1.72
LIG4-201ENST00000356922 TMC6Q7Z403 805 aa4.31□□□□□ -1.72
LIG4-201ENST00000356922 WDTC1Q8N5D0 677 aa4.31□□□□□ -1.72
LIG4-201ENST00000356922 TC2NQ8N9U0 490 aa4.31□□□□□ -1.72
LIG4-201ENST00000356922 ATRIPQ8WXE1 791 aa4.31□□□□□ -1.72
LIG4-201ENST00000356922 RIN2Q8WYP3 895 aaPredicted RBP4.31□□□□□ -1.72
LIG4-201ENST00000356922 SHC3Q92529 594 aa4.31□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms