RNA–Protein interactions for RNA: ENST00000356352.6

UPF2-201, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,569 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-201ENST00000356352 HACL1Q9UJ83 578 aa6.75□□□□□ -1.33
UPF2-201ENST00000356352 TCP11X1B4DZS4 312 aa6.75□□□□□ -1.33
UPF2-201ENST00000356352 HOXA2O43364 376 aa6.75□□□□□ -1.33
UPF2-201ENST00000356352 GRIN3BO60391 1043 aa6.75□□□□□ -1.33
UPF2-201ENST00000356352 SRGNP10124 158 aa6.75□□□□□ -1.33
UPF2-201ENST00000356352 RARBP10826 455 aa6.75□□□□□ -1.33
UPF2-201ENST00000356352 SOAT1P35610 550 aa6.75□□□□□ -1.33
UPF2-201ENST00000356352 GEMP55040 296 aa6.75□□□□□ -1.33
UPF2-201ENST00000356352 MTA1Q13330 715 aa6.75□□□□□ -1.33
UPF2-201ENST00000356352 KRR1Q13601 381 aaKnown RBP6.75□□□□□ -1.33
UPF2-201ENST00000356352 LAMC2Q13753 1193 aa6.75□□□□□ -1.33
UPF2-201ENST00000356352 NAB2Q15742 525 aa6.75□□□□□ -1.33
UPF2-201ENST00000356352 DGKDQ16760 1214 aa6.75□□□□□ -1.33
UPF2-201ENST00000356352 CACHD1Q5VU97 1274 aa6.75□□□□□ -1.33
UPF2-201ENST00000356352 ICE2Q659A1 982 aa6.75□□□□□ -1.33
UPF2-201ENST00000356352 TRIM48Q8IWZ4 208 aa6.75□□□□□ -1.33
UPF2-201ENST00000356352 NUP93Q8N1F7 819 aa6.75□□□□□ -1.33
UPF2-201ENST00000356352 RFWD2Q8NHY2 731 aa6.75□□□□□ -1.33
UPF2-201ENST00000356352 DIS3LQ8TF46 1054 aaKnown RBP6.75□□□□□ -1.33
UPF2-201ENST00000356352 SYN2Q92777 582 aaPredicted RBP6.75□□□□□ -1.33
UPF2-201ENST00000356352 C19orf60Q96EN9 201 aa6.75□□□□□ -1.33
UPF2-201ENST00000356352 RIT2Q99578 217 aa6.75□□□□□ -1.33
UPF2-201ENST00000356352 TSEN34Q9BSV6 310 aaKnown RBP6.75□□□□□ -1.33
UPF2-201ENST00000356352 OSBPL10Q9BXB5 764 aa6.75□□□□□ -1.33
UPF2-201ENST00000356352 MOV10L1Q9BXT6 1211 aaKnown RBP6.75□□□□□ -1.33
UPF2-201ENST00000356352 EMILIN2Q9BXX0 1053 aa6.75□□□□□ -1.33
UPF2-201ENST00000356352 ELP3Q9H9T3 547 aa6.75□□□□□ -1.33
UPF2-201ENST00000356352 DIABLOQ9NR28 239 aa6.75□□□□□ -1.33
UPF2-201ENST00000356352 KLC4Q9NSK0 619 aa6.75□□□□□ -1.33
UPF2-201ENST00000356352 USP15Q9Y4E8 981 aaPredicted RBP6.75□□□□□ -1.33
UPF2-201ENST00000356352 PCDHB2Q9Y5E7 798 aa6.75□□□□□ -1.33
UPF2-201ENST00000356352 TK2O00142 265 aa6.75□□□□□ -1.33
UPF2-201ENST00000356352 LRG1P02750 347 aa6.75□□□□□ -1.33
UPF2-201ENST00000356352 TMEM253P0C7T8 217 aa6.75□□□□□ -1.33
UPF2-201ENST00000356352 CETPP11597 493 aa6.75□□□□□ -1.33
UPF2-201ENST00000356352 AKR1B1P15121 316 aa6.75□□□□□ -1.33
UPF2-201ENST00000356352 ZNF543Q08ER8 600 aa6.75□□□□□ -1.33
UPF2-201ENST00000356352 TMEM132BQ14DG7 1078 aa6.75□□□□□ -1.33
UPF2-201ENST00000356352 CCDC144BQ3MJ40 725 aa6.75□□□□□ -1.33
UPF2-201ENST00000356352 ZNF544Q6NX49 715 aa6.75□□□□□ -1.33
UPF2-201ENST00000356352 CHMP1BQ7LBR1 199 aa6.75□□□□□ -1.33
UPF2-201ENST00000356352 APLFQ8IW19 511 aaPredicted RBP6.75□□□□□ -1.33
UPF2-201ENST00000356352 UCMAQ8WVF2 138 aa6.75□□□□□ -1.33
UPF2-201ENST00000356352 MAP3K14Q99558 947 aa6.75□□□□□ -1.33
UPF2-201ENST00000356352 COLEC11Q9BWP8 271 aa6.75□□□□□ -1.33
UPF2-201ENST00000356352 EPC1Q9H2F5 836 aa6.75□□□□□ -1.33
UPF2-201ENST00000356352 C17orf75Q9HAS0 396 aa6.75□□□□□ -1.33
UPF2-201ENST00000356352 BATF3Q9NR55 127 aa6.75□□□□□ -1.33
UPF2-201ENST00000356352 ERAP1Q9NZ08 941 aa6.75□□□□□ -1.33
UPF2-201ENST00000356352 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP6.75□□□□□ -1.33
UPF2-201ENST00000356352 CAMSAP3Q9P1Y5 1249 aaPredicted RBP6.75□□□□□ -1.33
UPF2-201ENST00000356352 ZNF521Q96K83 1311 aa6.75□□□□□ -1.33
UPF2-201ENST00000356352 CYTH3O43739 400 aa6.74□□□□□ -1.33
UPF2-201ENST00000356352 RASSF9O75901 435 aa6.74□□□□□ -1.33
UPF2-201ENST00000356352 RHOBTB1O94844 696 aa6.74□□□□□ -1.33
UPF2-201ENST00000356352 SEC24DO94855 1032 aaPredicted RBP6.74□□□□□ -1.33
UPF2-201ENST00000356352 RHOBTB3O94955 611 aa6.74□□□□□ -1.33
UPF2-201ENST00000356352 ALOX15P16050 662 aaPredicted RBP6.74□□□□□ -1.33
UPF2-201ENST00000356352 GARTP22102 1010 aa6.74□□□□□ -1.33
UPF2-201ENST00000356352 NMT1P30419 496 aaKnown RBP6.74□□□□□ -1.33
UPF2-201ENST00000356352 SLC11A2P49281 568 aa6.74□□□□□ -1.33
UPF2-201ENST00000356352 KDSRQ06136 332 aa6.74□□□□□ -1.33
UPF2-201ENST00000356352 ITGA9Q13797 1035 aa6.74□□□□□ -1.33
UPF2-201ENST00000356352 CYTH1Q15438 398 aa6.74□□□□□ -1.33
UPF2-201ENST00000356352 TRIP4Q15650 581 aaPredicted RBP6.74□□□□□ -1.33
UPF2-201ENST00000356352 CAPRIN2Q6IMN6 1127 aaKnown RBP6.74□□□□□ -1.33
UPF2-201ENST00000356352 TIGD7Q6NT04 549 aaPredicted RBP6.74□□□□□ -1.33
UPF2-201ENST00000356352 HHIPL2Q6UWX4 724 aa6.74□□□□□ -1.33
UPF2-201ENST00000356352 LONP2Q86WA8 852 aa6.74□□□□□ -1.33
UPF2-201ENST00000356352 P3H2Q8IVL5 708 aa6.74□□□□□ -1.33
UPF2-201ENST00000356352 PPIL6Q8IXY8 311 aa6.74□□□□□ -1.33
UPF2-201ENST00000356352 GSPT2Q8IYD1 628 aaKnown RBP6.74□□□□□ -1.33
UPF2-201ENST00000356352 TERB1Q8NA31 727 aa6.74□□□□□ -1.33
UPF2-201ENST00000356352 CELF1Q92879 486 aaKnown RBP6.74□□□□□ -1.33
UPF2-201ENST00000356352 CHAMP1Q96JM3 812 aa6.74□□□□□ -1.33
UPF2-201ENST00000356352 PHF20Q9BVI0 1012 aa6.74□□□□□ -1.33
UPF2-201ENST00000356352 PRRG3Q9BZD7 231 aa6.74□□□□□ -1.33
UPF2-201ENST00000356352 NIF3L1Q9GZT8 377 aa6.74□□□□□ -1.33
UPF2-201ENST00000356352 ASCC2Q9H1I8 757 aaPredicted RBP6.74□□□□□ -1.33
UPF2-201ENST00000356352 ANKEF1Q9NU02 776 aa6.74□□□□□ -1.33
UPF2-201ENST00000356352 UTP6Q9NYH9 597 aaKnown RBP6.74□□□□□ -1.33
UPF2-201ENST00000356352 AMACRQ9UHK6 382 aa6.74□□□□□ -1.33
UPF2-201ENST00000356352 PRG3Q9Y2Y8 225 aaPredicted RBP6.74□□□□□ -1.33
UPF2-201ENST00000356352 AFF2P51816 1311 aa6.74□□□□□ -1.33
UPF2-201ENST00000356352 CRB1P82279 1406 aa6.74□□□□□ -1.33
UPF2-201ENST00000356352 KIF1CO43896 1103 aaKnown RBP6.74□□□□□ -1.33
UPF2-201ENST00000356352 POU4F1Q01851 419 aa6.74□□□□□ -1.33
UPF2-201ENST00000356352 FAM83EQ2M2I3 478 aa6.74□□□□□ -1.33
UPF2-201ENST00000356352 GOLGA7BQ2TAP0 167 aa6.74□□□□□ -1.33
UPF2-201ENST00000356352 SLC44A5Q8NCS7 719 aa6.74□□□□□ -1.33
UPF2-201ENST00000356352 CYGBQ8WWM9 190 aa6.74□□□□□ -1.33
UPF2-201ENST00000356352 TRIM9Q9C026 710 aa6.74□□□□□ -1.33
UPF2-201ENST00000356352 MAN1C1Q9NR34 630 aa6.74□□□□□ -1.33
UPF2-201ENST00000356352 PCMTD2Q9NV79 361 aa6.74□□□□□ -1.33
UPF2-201ENST00000356352 CRLS1Q9UJA2 301 aa6.74□□□□□ -1.33
UPF2-201ENST00000356352 FBXO2Q9UK22 296 aaPredicted RBP6.74□□□□□ -1.33
UPF2-201ENST00000356352 FHOD1Q9Y613 1164 aa6.74□□□□□ -1.33
UPF2-201ENST00000356352 NRKQ7Z2Y5 1582 aa6.74□□□□□ -1.33
UPF2-201ENST00000356352 SPATA31E1Q6ZUB1 1445 aa6.74□□□□□ -1.33
UPF2-201ENST00000356352 A0A1B0GTH6 734 aa6.74□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms