RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 PON1P27169 355 aa9.08□□□□□ -0.96
RTN3-202ENST00000339997 CYLC2Q14093 348 aaPredicted RBP9.08□□□□□ -0.96
RTN3-202ENST00000339997 PDIA5Q14554 519 aa9.08□□□□□ -0.96
RTN3-202ENST00000339997 COG2Q14746 738 aa9.08□□□□□ -0.96
RTN3-202ENST00000339997 SLC10A5Q5PT55 438 aa9.08□□□□□ -0.96
RTN3-202ENST00000339997 RUSC1Q9BVN2 902 aa9.08□□□□□ -0.96
RTN3-202ENST00000339997 MRPL1Q9BYD6 325 aaKnown RBP9.08□□□□□ -0.96
RTN3-202ENST00000339997 ZNF302Q9NR11 478 aa9.08□□□□□ -0.96
RTN3-202ENST00000339997 FBXO28Q9NVF7 368 aa9.08□□□□□ -0.96
RTN3-202ENST00000339997 SLC12A6Q9UHW9 1150 aa9.08□□□□□ -0.96
RTN3-202ENST00000339997 HPSEQ9Y251 543 aa9.08□□□□□ -0.96
RTN3-202ENST00000339997 FAM205AQ6ZU69 1335 aa9.08□□□□□ -0.96
RTN3-202ENST00000339997 CNTNAP5Q8WYK1 1306 aa9.08□□□□□ -0.96
RTN3-202ENST00000339997 GJB6O95452 261 aa9.08□□□□□ -0.96
RTN3-202ENST00000339997 NDUFB10O96000 172 aa9.08□□□□□ -0.96
RTN3-202ENST00000339997 ZFXP17010 805 aaPredicted RBP9.08□□□□□ -0.96
RTN3-202ENST00000339997 RRM1P23921 792 aa9.08□□□□□ -0.96
RTN3-202ENST00000339997 NFKBIAP25963 317 aa9.08□□□□□ -0.96
RTN3-202ENST00000339997 SOX10P56693 466 aa9.08□□□□□ -0.96
RTN3-202ENST00000339997 CRYMQ14894 314 aa9.08□□□□□ -0.96
RTN3-202ENST00000339997 PAPD7Q5XG87 772 aaKnown RBP9.08□□□□□ -0.96
RTN3-202ENST00000339997 CLEC4GQ6UXB4 293 aa9.08□□□□□ -0.96
RTN3-202ENST00000339997 EFCAB3Q8N7B9 438 aa9.08□□□□□ -0.96
RTN3-202ENST00000339997 ZNF669Q96BR6 464 aaPredicted RBP9.08□□□□□ -0.96
RTN3-202ENST00000339997 DCPSQ96C86 337 aaKnown RBP9.08□□□□□ -0.96
RTN3-202ENST00000339997 CNDP1Q96KN2 507 aa9.08□□□□□ -0.96
RTN3-202ENST00000339997 TLR10Q9BXR5 811 aa9.08□□□□□ -0.96
RTN3-202ENST00000339997 TOPORSQ9NS56 1045 aaPredicted RBP9.08□□□□□ -0.96
RTN3-202ENST00000339997 WDR19Q8NEZ3 1342 aa9.08□□□□□ -0.96
RTN3-202ENST00000339997 NLRP1Q9C000 1473 aa9.08□□□□□ -0.96
RTN3-202ENST00000339997 AKAP3O75969 853 aa9.08□□□□□ -0.96
RTN3-202ENST00000339997 FKBP9O95302 570 aa9.08□□□□□ -0.96
RTN3-202ENST00000339997 PYGLP06737 847 aa9.08□□□□□ -0.96
RTN3-202ENST00000339997 RBBP7Q16576 425 aa9.08□□□□□ -0.96
RTN3-202ENST00000339997 ZCCHC23Q6ZST2 131 aa9.08□□□□□ -0.96
RTN3-202ENST00000339997 FKBP9P1Q75LS8 142 aa9.08□□□□□ -0.96
RTN3-202ENST00000339997 PRUNE1Q86TP1 453 aa9.08□□□□□ -0.96
RTN3-202ENST00000339997 GLIS3Q8NEA6 775 aa9.08□□□□□ -0.96
RTN3-202ENST00000339997 ATP8B4Q8TF62 1192 aa9.08□□□□□ -0.96
RTN3-202ENST00000339997 DNAJC7Q99615 494 aa9.08□□□□□ -0.96
RTN3-202ENST00000339997 TRIM15Q9C019 465 aa9.08□□□□□ -0.96
RTN3-202ENST00000339997 RNPEPQ9H4A4 650 aa9.08□□□□□ -0.96
RTN3-202ENST00000339997 CYLDQ9NQC7 956 aa9.08□□□□□ -0.96
RTN3-202ENST00000339997 SENP1Q9P0U3 644 aa9.08□□□□□ -0.96
RTN3-202ENST00000339997 NIPSNAP3AQ9UFN0 247 aaPredicted RBP9.08□□□□□ -0.96
RTN3-202ENST00000339997 SLC13A4Q9UKG4 626 aa9.08□□□□□ -0.96
RTN3-202ENST00000339997 M0R3G1 203 aa9.08□□□□□ -0.96
RTN3-202ENST00000339997 HLA-DRAP01903 254 aa9.08□□□□□ -0.96
RTN3-202ENST00000339997 TMEM253P0C7T8 217 aa9.08□□□□□ -0.96
RTN3-202ENST00000339997 CACNA2D1P54289 1103 aa9.08□□□□□ -0.96
RTN3-202ENST00000339997 THEMIS2Q5TEJ8 643 aa9.08□□□□□ -0.96
RTN3-202ENST00000339997 SNX30Q5VWJ9 437 aa9.08□□□□□ -0.96
RTN3-202ENST00000339997 ILDR1Q86SU0 546 aaPredicted RBP9.08□□□□□ -0.96
RTN3-202ENST00000339997 ZNF280CQ8ND82 737 aa9.08□□□□□ -0.96
RTN3-202ENST00000339997 FBXO36Q8NEA4 188 aa9.08□□□□□ -0.96
RTN3-202ENST00000339997 AFG1LQ8WV93 481 aa9.08□□□□□ -0.96
RTN3-202ENST00000339997 VPS50Q96JG6 964 aa9.08□□□□□ -0.96
RTN3-202ENST00000339997 PRPF18Q99633 342 aaKnown RBP9.08□□□□□ -0.96
RTN3-202ENST00000339997 UBP1Q9NZI7 540 aa9.08□□□□□ -0.96
RTN3-202ENST00000339997 DTNAQ9Y4J8 743 aa9.08□□□□□ -0.96
RTN3-202ENST00000339997 PALLDQ8WX93 1383 aa9.08□□□□□ -0.96
RTN3-202ENST00000339997 SNRPAP09012 282 aaKnown RBP9.07□□□□□ -0.96
RTN3-202ENST00000339997 FAM86B2P0C5J1 330 aa9.07□□□□□ -0.96
RTN3-202ENST00000339997 PAMP19021 973 aa9.07□□□□□ -0.96
RTN3-202ENST00000339997 ALDH5A1P51649 535 aaPredicted RBP9.07□□□□□ -0.96
RTN3-202ENST00000339997 ZNF543Q08ER8 600 aa9.07□□□□□ -0.96
RTN3-202ENST00000339997 GRB10Q13322 594 aa9.07□□□□□ -0.96
RTN3-202ENST00000339997 ATP1A4Q13733 1029 aa9.07□□□□□ -0.96
RTN3-202ENST00000339997 ALCAMQ13740 583 aa9.07□□□□□ -0.96
RTN3-202ENST00000339997 ACAP1Q15027 740 aa9.07□□□□□ -0.96
RTN3-202ENST00000339997 STXBP2Q15833 593 aa9.07□□□□□ -0.96
RTN3-202ENST00000339997 EFHC2Q5JST6 749 aa9.07□□□□□ -0.96
RTN3-202ENST00000339997 TTC33Q6PID6 262 aaPredicted RBP9.07□□□□□ -0.96
RTN3-202ENST00000339997 FUKQ8N0W3 1084 aa9.07□□□□□ -0.96
RTN3-202ENST00000339997 PTPRN2Q92932 1015 aa9.07□□□□□ -0.96
RTN3-202ENST00000339997 STAU2Q9NUL3 570 aaKnown RBP eCLIP9.07□□□□□ -0.96
RTN3-202ENST00000339997 TBC1D23Q9NUY8 699 aa9.07□□□□□ -0.96
RTN3-202ENST00000339997 NAALADL1Q9UQQ1 740 aa9.07□□□□□ -0.96
RTN3-202ENST00000339997 PCDHA10Q9Y5I2 948 aa9.07□□□□□ -0.96
RTN3-202ENST00000339997 ARHGAP31Q2M1Z3 1444 aa9.07□□□□□ -0.96
RTN3-202ENST00000339997 ORC4O43929 436 aa9.07□□□□□ -0.96
RTN3-202ENST00000339997 MED24O75448 989 aa9.07□□□□□ -0.96
RTN3-202ENST00000339997 VEGFAP15692 232 aaPredicted RBP9.07□□□□□ -0.96
RTN3-202ENST00000339997 RASA1P20936 1047 aa9.07□□□□□ -0.96
RTN3-202ENST00000339997 SSTR1P30872 391 aa9.07□□□□□ -0.96
RTN3-202ENST00000339997 RFX5P48382 616 aaPredicted RBP9.07□□□□□ -0.96
RTN3-202ENST00000339997 GSSP48637 474 aa9.07□□□□□ -0.96
RTN3-202ENST00000339997 CLK1P49759 484 aaKnown RBP9.07□□□□□ -0.96
RTN3-202ENST00000339997 PSMC6P62333 389 aa9.07□□□□□ -0.96
RTN3-202ENST00000339997 RPL10AP62906 217 aaKnown RBP9.07□□□□□ -0.96
RTN3-202ENST00000339997 KCNJ2P63252 427 aa9.07□□□□□ -0.96
RTN3-202ENST00000339997 ZNF844Q08AG5 666 aa9.07□□□□□ -0.96
RTN3-202ENST00000339997 BAATQ14032 418 aaPredicted RBP9.07□□□□□ -0.96
RTN3-202ENST00000339997 OASLQ15646 514 aaKnown RBP9.07□□□□□ -0.96
RTN3-202ENST00000339997 MAPK11Q15759 364 aa9.07□□□□□ -0.96
RTN3-202ENST00000339997 DNAL1Q4LDG9 190 aa9.07□□□□□ -0.96
RTN3-202ENST00000339997 IPMKQ8NFU5 416 aa9.07□□□□□ -0.96
RTN3-202ENST00000339997 ARHGEF1Q92888 912 aaKnown RBP9.07□□□□□ -0.96
RTN3-202ENST00000339997 ELMO2Q96JJ3 720 aa9.07□□□□□ -0.96
RTN3-202ENST00000339997 PWWP2AQ96N64 755 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 63.8 ms