RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 MAIP1Q8WWC4 291 aa12.58□□□□□ -0.4
USP1-201ENST00000339950 TTC1Q99614 292 aa12.58□□□□□ -0.4
USP1-201ENST00000339950 IRAK4Q9NWZ3 460 aa12.58□□□□□ -0.4
USP1-201ENST00000339950 PCDHA3Q9Y5H8 950 aa12.58□□□□□ -0.4
USP1-201ENST00000339950 TOGARAM1Q9Y4F4 1720 aa12.58□□□□□ -0.4
USP1-201ENST00000339950 CDH16O75309 829 aa12.58□□□□□ -0.4
USP1-201ENST00000339950 PPFIA2O75334 1257 aa12.58□□□□□ -0.4
USP1-201ENST00000339950 ANP32DO95626 131 aa12.58□□□□□ -0.4
USP1-201ENST00000339950 ADORA2BP29275 332 aa12.58□□□□□ -0.4
USP1-201ENST00000339950 EPHB1P54762 984 aa12.58□□□□□ -0.4
USP1-201ENST00000339950 WNT7BP56706 349 aa12.58□□□□□ -0.4
USP1-201ENST00000339950 EIF3EP60228 445 aaKnown RBP12.58□□□□□ -0.4
USP1-201ENST00000339950 FEZF2Q8TBJ5 459 aa12.58□□□□□ -0.4
USP1-201ENST00000339950 CPB2Q96IY4 423 aa12.58□□□□□ -0.4
USP1-201ENST00000339950 FAM111AQ96PZ2 611 aa12.58□□□□□ -0.4
USP1-201ENST00000339950 DCLK3Q9C098 648 aa12.58□□□□□ -0.4
USP1-201ENST00000339950 hCG_2014768A0A024R1R8 64 aa12.57□□□□□ -0.4
USP1-201ENST00000339950 A0A0A6YYK5 440 aaPredicted RBP12.57□□□□□ -0.4
USP1-201ENST00000339950 TMPRSS15P98073 1019 aa12.57□□□□□ -0.4
USP1-201ENST00000339950 OR6B3Q8NGW1 331 aa12.57□□□□□ -0.4
USP1-201ENST00000339950 SPATA18Q8TC71 538 aa12.57□□□□□ -0.4
USP1-201ENST00000339950 RMDN2Q96LZ7 410 aa12.57□□□□□ -0.4
USP1-201ENST00000339950 AGAP1Q9UPQ3 857 aa12.57□□□□□ -0.4
USP1-201ENST00000339950 IRS2Q9Y4H2 1338 aa12.57□□□□□ -0.4
USP1-201ENST00000339950 TTLL13PA6NNM8 815 aa12.57□□□□□ -0.4
USP1-201ENST00000339950 CXCL8P10145 99 aa12.57□□□□□ -0.4
USP1-201ENST00000339950 ITIH2P19823 946 aa12.57□□□□□ -0.4
USP1-201ENST00000339950 GBP1P32455 592 aa12.57□□□□□ -0.4
USP1-201ENST00000339950 CTCFP49711 727 aaPredicted RBP12.57□□□□□ -0.4
USP1-201ENST00000339950 TAF5Q15542 800 aa12.57□□□□□ -0.4
USP1-201ENST00000339950 CLUL1Q15846 466 aa12.57□□□□□ -0.4
USP1-201ENST00000339950 TSNAXIP1Q2TAA8 658 aa12.57□□□□□ -0.4
USP1-201ENST00000339950 CAPRIN2Q6IMN6 1127 aaKnown RBP12.57□□□□□ -0.4
USP1-201ENST00000339950 NUDCD1Q96RS6 583 aa12.57□□□□□ -0.4
USP1-201ENST00000339950 ELP3Q9H9T3 547 aa12.57□□□□□ -0.4
USP1-201ENST00000339950 MYH11P35749 1972 aa12.57□□□□□ -0.4
USP1-201ENST00000339950 EME2A4GXA9 379 aaPredicted RBP12.57□□□□□ -0.4
USP1-201ENST00000339950 FAM47DPA6NHR8 397 aa12.57□□□□□ -0.4
USP1-201ENST00000339950 H0YGN5 161 aa12.57□□□□□ -0.4
USP1-201ENST00000339950 WDR46O15213 610 aaKnown RBP12.57□□□□□ -0.4
USP1-201ENST00000339950 B4GALT5O43286 388 aa12.57□□□□□ -0.4
USP1-201ENST00000339950 DKC1O60832 514 aaKnown RBP eCLIP12.57□□□□□ -0.4
USP1-201ENST00000339950 ADRA1DP25100 572 aa12.57□□□□□ -0.4
USP1-201ENST00000339950 RXRBP28702 533 aa12.57□□□□□ -0.4
USP1-201ENST00000339950 MROH9Q5TGP6 573 aa12.57□□□□□ -0.4
USP1-201ENST00000339950 CCDC62Q6P9F0 684 aa12.57□□□□□ -0.4
USP1-201ENST00000339950 ARMC9Q7Z3E5 817 aa12.57□□□□□ -0.4
USP1-201ENST00000339950 SUGP1Q8IWZ8 645 aaKnown RBP12.57□□□□□ -0.4
USP1-201ENST00000339950 FLAD1Q8NFF5 587 aa12.57□□□□□ -0.4
USP1-201ENST00000339950 AGAP11Q8TF27 550 aa12.57□□□□□ -0.4
USP1-201ENST00000339950 SHC3Q92529 594 aa12.57□□□□□ -0.4
USP1-201ENST00000339950 SENP7Q9BQF6 1050 aa12.57□□□□□ -0.4
USP1-201ENST00000339950 GPR88Q9GZN0 384 aa12.57□□□□□ -0.4
USP1-201ENST00000339950 RANBP17Q9H2T7 1088 aaKnown RBP12.57□□□□□ -0.4
USP1-201ENST00000339950 A1CFQ9NQ94 594 aaKnown RBP12.57□□□□□ -0.4
USP1-201ENST00000339950 CISHQ9NSE2 258 aa12.57□□□□□ -0.4
USP1-201ENST00000339950 ZFP69BQ9UJL9 534 aa12.57□□□□□ -0.4
USP1-201ENST00000339950 PACSIN3Q9UKS6 424 aa12.57□□□□□ -0.4
USP1-201ENST00000339950 STXBP5LQ9Y2K9 1186 aa12.57□□□□□ -0.4
USP1-201ENST00000339950 NFS1Q9Y697 457 aa12.57□□□□□ -0.4
USP1-201ENST00000339950 KCNN4O15554 427 aa12.56□□□□□ -0.4
USP1-201ENST00000339950 RPA3P35244 121 aaPredicted RBP12.56□□□□□ -0.4
USP1-201ENST00000339950 CRADDP78560 199 aa12.56□□□□□ -0.4
USP1-201ENST00000339950 SLC25A41Q8N5S1 370 aa12.56□□□□□ -0.4
USP1-201ENST00000339950 ZNF280CQ8ND82 737 aa12.56□□□□□ -0.4
USP1-201ENST00000339950 HELQQ8TDG4 1101 aa12.56□□□□□ -0.4
USP1-201ENST00000339950 ANKRD36BP1Q96IX9 119 aa12.56□□□□□ -0.4
USP1-201ENST00000339950 ACAD9Q9H845 621 aa12.56□□□□□ -0.4
USP1-201ENST00000339950 PARVAQ9NVD7 372 aa12.56□□□□□ -0.4
USP1-201ENST00000339950 PHTF1Q9UMS5 762 aa12.56□□□□□ -0.4
USP1-201ENST00000339950 DIS3Q9Y2L1 958 aaKnown RBP12.56□□□□□ -0.4
USP1-201ENST00000339950 ARL2BPQ9Y2Y0 163 aa12.56□□□□□ -0.4
USP1-201ENST00000339950 CSADQ9Y600 493 aa12.56□□□□□ -0.4
USP1-201ENST00000339950 DOT1LQ8TEK3 1739 aa12.56□□□□□ -0.4
USP1-201ENST00000339950 VWA5AO00534 786 aa12.56□□□□□ -0.4
USP1-201ENST00000339950 ZBED1O96006 694 aa12.56□□□□□ -0.4
USP1-201ENST00000339950 ITGB3P05106 788 aa12.56□□□□□ -0.4
USP1-201ENST00000339950 PRKCBP05771 671 aa12.56□□□□□ -0.4
USP1-201ENST00000339950 RFC1P35251 1148 aaPredicted RBP12.56□□□□□ -0.4
USP1-201ENST00000339950 TCF7P36402 384 aaPredicted RBP12.56□□□□□ -0.4
USP1-201ENST00000339950 C15orf59Q2T9L4 293 aaPredicted RBP12.56□□□□□ -0.4
USP1-201ENST00000339950 CES3Q6UWW8 571 aa12.56□□□□□ -0.4
USP1-201ENST00000339950 ZCCHC23Q6ZST2 131 aa12.56□□□□□ -0.4
USP1-201ENST00000339950 MTDHQ86UE4 582 aaKnown RBP12.56□□□□□ -0.4
USP1-201ENST00000339950 TRIM56Q9BRZ2 755 aaKnown RBP12.56□□□□□ -0.4
USP1-201ENST00000339950 DHX35Q9H5Z1 703 aaKnown RBP12.56□□□□□ -0.4
USP1-201ENST00000339950 RPF1Q9H9Y2 349 aaKnown RBP12.56□□□□□ -0.4
USP1-201ENST00000339950 XPO7Q9UIA9 1087 aaKnown RBP12.56□□□□□ -0.4
USP1-201ENST00000339950 GLI3P10071 1580 aa12.56□□□□□ -0.4
USP1-201ENST00000339950 LOC100653049A0A140TA62 436 aa12.56□□□□□ -0.4
USP1-201ENST00000339950 PRPSAP2O60256 369 aa12.56□□□□□ -0.4
USP1-201ENST00000339950 KRT34O76011 436 aa12.56□□□□□ -0.4
USP1-201ENST00000339950 VTNP04004 478 aa12.56□□□□□ -0.4
USP1-201ENST00000339950 ENO1P06733 434 aaKnown RBP12.56□□□□□ -0.4
USP1-201ENST00000339950 KRT16P08779 473 aa12.56□□□□□ -0.4
USP1-201ENST00000339950 CD48P09326 243 aa12.56□□□□□ -0.4
USP1-201ENST00000339950 LCP1P13796 627 aa12.56□□□□□ -0.4
USP1-201ENST00000339950 PDGFRAP16234 1089 aa12.56□□□□□ -0.4
USP1-201ENST00000339950 PDE1BQ01064 536 aa12.56□□□□□ -0.4
USP1-201ENST00000339950 ALCAMQ13740 583 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms