RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 MMP8P22894 467 aa14.23□□□□□ -0.13
HMGB1-202ENST00000339872 YY1P25490 414 aa14.23□□□□□ -0.13
HMGB1-202ENST00000339872 INCA1Q0VD86 236 aa14.23□□□□□ -0.13
HMGB1-202ENST00000339872 PTP4A2Q12974 167 aa14.23□□□□□ -0.13
HMGB1-202ENST00000339872 DCAF12L1Q5VU92 463 aa14.23□□□□□ -0.13
HMGB1-202ENST00000339872 CCDC70Q6NSX1 233 aa14.23□□□□□ -0.13
HMGB1-202ENST00000339872 CPNE8Q86YQ8 564 aa14.23□□□□□ -0.13
HMGB1-202ENST00000339872 LRRC52Q8N7C0 313 aa14.23□□□□□ -0.13
HMGB1-202ENST00000339872 UBL4BQ8N7F7 174 aa14.23□□□□□ -0.13
HMGB1-202ENST00000339872 SLAIN1Q8ND83 568 aa14.23□□□□□ -0.13
HMGB1-202ENST00000339872 ACTRT1Q8TDG2 376 aa14.23□□□□□ -0.13
HMGB1-202ENST00000339872 RPS6KC1Q96S38 1066 aa14.23□□□□□ -0.13
HMGB1-202ENST00000339872 TRIM7Q9C029 511 aa14.23□□□□□ -0.13
HMGB1-202ENST00000339872 BARX2Q9UMQ3 279 aaPredicted RBP14.23□□□□□ -0.13
HMGB1-202ENST00000339872 CD4P01730 458 aa14.23□□□□□ -0.13
HMGB1-202ENST00000339872 NDST1P52848 882 aa14.23□□□□□ -0.13
HMGB1-202ENST00000339872 XKR4Q5GH76 650 aa14.23□□□□□ -0.13
HMGB1-202ENST00000339872 DENND1BQ6P3S1 775 aa14.23□□□□□ -0.13
HMGB1-202ENST00000339872 ALG3Q92685 438 aa14.23□□□□□ -0.13
HMGB1-202ENST00000339872 ZNF518BQ9C0D4 1074 aa14.23□□□□□ -0.13
HMGB1-202ENST00000339872 GOLGA2P5Q9HBQ8 144 aa14.23□□□□□ -0.13
HMGB1-202ENST00000339872 HMX1Q9NP08 348 aaPredicted RBP14.23□□□□□ -0.13
HMGB1-202ENST00000339872 FAM105AQ9NUU6 356 aa14.23□□□□□ -0.13
HMGB1-202ENST00000339872 BRCA2P51587 3418 aa14.22□□□□□ -0.13
HMGB1-202ENST00000339872 GPR182O15218 404 aa14.22□□□□□ -0.13
HMGB1-202ENST00000339872 CALB1P05937 261 aa14.22□□□□□ -0.13
HMGB1-202ENST00000339872 GHRP10912 638 aa14.22□□□□□ -0.13
HMGB1-202ENST00000339872 ATF7P17544 494 aaPredicted RBP14.22□□□□□ -0.13
HMGB1-202ENST00000339872 CDH5P33151 784 aaPredicted RBP14.22□□□□□ -0.13
HMGB1-202ENST00000339872 MARCKSL1P49006 195 aa14.22□□□□□ -0.13
HMGB1-202ENST00000339872 ARHGEF6Q15052 776 aa14.22□□□□□ -0.13
HMGB1-202ENST00000339872 RASGEF1CQ8N431 466 aa14.22□□□□□ -0.13
HMGB1-202ENST00000339872 TTC39CQ8N584 583 aa14.22□□□□□ -0.13
HMGB1-202ENST00000339872 WDTC1Q8N5D0 677 aa14.22□□□□□ -0.13
HMGB1-202ENST00000339872 KRT35Q92764 455 aa14.22□□□□□ -0.13
HMGB1-202ENST00000339872 GLT1D1Q96MS3 346 aa14.22□□□□□ -0.13
HMGB1-202ENST00000339872 BUD13Q9BRD0 619 aaKnown RBP eCLIP14.22□□□□□ -0.136e-8■□□□□ 10.3
HMGB1-202ENST00000339872 OSBPL7Q9BZF2 842 aa14.22□□□□□ -0.13
HMGB1-202ENST00000339872 CARD9Q9H257 536 aa14.22□□□□□ -0.13
HMGB1-202ENST00000339872 AGO3Q9H9G7 860 aaKnown RBP14.22□□□□□ -0.13
HMGB1-202ENST00000339872 MRPL47Q9HD33 250 aaKnown RBP14.22□□□□□ -0.13
HMGB1-202ENST00000339872 RAB21Q9UL25 225 aa14.22□□□□□ -0.13
HMGB1-202ENST00000339872 SCINQ9Y6U3 715 aa14.22□□□□□ -0.13
HMGB1-202ENST00000339872 CD52P31358 61 aa14.21□□□□□ -0.13
HMGB1-202ENST00000339872 GRK4P32298 578 aa14.21□□□□□ -0.13
HMGB1-202ENST00000339872 VSNL1P62760 191 aa14.21□□□□□ -0.13
HMGB1-202ENST00000339872 SOX4Q06945 474 aaPredicted RBP14.21□□□□□ -0.13
HMGB1-202ENST00000339872 PTK7Q13308 1070 aa14.21□□□□□ -0.13
HMGB1-202ENST00000339872 ZNF211Q13398 564 aaPredicted RBP14.21□□□□□ -0.13
HMGB1-202ENST00000339872 MAMLD1Q13495 774 aa14.21□□□□□ -0.13
HMGB1-202ENST00000339872 TMCO3Q6UWJ1 677 aa14.21□□□□□ -0.13
HMGB1-202ENST00000339872 DPH6Q7L8W6 267 aa14.21□□□□□ -0.13
HMGB1-202ENST00000339872 RNPC3Q96LT9 517 aaKnown RBP14.21□□□□□ -0.13
HMGB1-202ENST00000339872 HEXIM2Q96MH2 286 aaKnown RBP14.21□□□□□ -0.13
HMGB1-202ENST00000339872 ZFP42Q96MM3 310 aa14.21□□□□□ -0.13
HMGB1-202ENST00000339872 ZNF560Q96MR9 790 aa14.21□□□□□ -0.13
HMGB1-202ENST00000339872 TSPAN18Q96SJ8 248 aa14.21□□□□□ -0.13
HMGB1-202ENST00000339872 MRPL45Q9BRJ2 306 aaKnown RBP14.21□□□□□ -0.13
HMGB1-202ENST00000339872 WNT8AQ9H1J5 351 aa14.21□□□□□ -0.13
HMGB1-202ENST00000339872 FAM124BQ9H5Z6 455 aaPredicted RBP14.21□□□□□ -0.13
HMGB1-202ENST00000339872 CHST12Q9NRB3 414 aa14.21□□□□□ -0.13
HMGB1-202ENST00000339872 TARSL2A2RTX5 802 aaKnown RBP14.21□□□□□ -0.13
HMGB1-202ENST00000339872 CCDC151A5D8V7 595 aa14.21□□□□□ -0.13
HMGB1-202ENST00000339872 MOXD2PA6NHM9 499 aa14.21□□□□□ -0.13
HMGB1-202ENST00000339872 MEIS3P2A8K0S8 358 aa14.21□□□□□ -0.13
HMGB1-202ENST00000339872 MYO1FO00160 1098 aa14.21□□□□□ -0.13
HMGB1-202ENST00000339872 GJB6O95452 261 aa14.21□□□□□ -0.13
HMGB1-202ENST00000339872 PAK2Q13177 524 aa14.21□□□□□ -0.13
HMGB1-202ENST00000339872 BRD3Q15059 726 aa14.21□□□□□ -0.13
HMGB1-202ENST00000339872 SGO2Q562F6 1265 aa14.21□□□□□ -0.13
HMGB1-202ENST00000339872 FBXO47Q5MNV8 452 aa14.21□□□□□ -0.13
HMGB1-202ENST00000339872 LHX8Q68G74 356 aa14.21□□□□□ -0.13
HMGB1-202ENST00000339872 PLEKHA7Q6IQ23 1121 aa14.21□□□□□ -0.13
HMGB1-202ENST00000339872 C8orf74Q6P047 294 aa14.21□□□□□ -0.13
HMGB1-202ENST00000339872 ERICH1Q86X53 443 aa14.21□□□□□ -0.13
HMGB1-202ENST00000339872 HACE1Q8IYU2 909 aa14.21□□□□□ -0.13
HMGB1-202ENST00000339872 CD101Q93033 1021 aa14.21□□□□□ -0.13
HMGB1-202ENST00000339872 LRRC1Q9BTT6 524 aa14.21□□□□□ -0.13
HMGB1-202ENST00000339872 NT5C1AQ9BXI3 368 aa14.21□□□□□ -0.13
HMGB1-202ENST00000339872 LHX5Q9H2C1 402 aa14.21□□□□□ -0.13
HMGB1-202ENST00000339872 PARVAQ9NVD7 372 aa14.21□□□□□ -0.13
HMGB1-202ENST00000339872 PADI3Q9ULW8 664 aa14.21□□□□□ -0.13
HMGB1-202ENST00000339872 PIRO00625 290 aa14.2□□□□□ -0.14
HMGB1-202ENST00000339872 PTGESO14684 152 aa14.2□□□□□ -0.14
HMGB1-202ENST00000339872 MICAL2O94851 1124 aa14.2□□□□□ -0.14
HMGB1-202ENST00000339872 VDRP11473 427 aa14.2□□□□□ -0.14
HMGB1-202ENST00000339872 ITGA4P13612 1032 aa14.2□□□□□ -0.14
HMGB1-202ENST00000339872 MRPS25P82663 173 aaKnown RBP14.2□□□□□ -0.14
HMGB1-202ENST00000339872 AP1M1Q9BXS5 423 aa14.2□□□□□ -0.14
HMGB1-202ENST00000339872 ERVK-5Q9HDB9 667 aa14.2□□□□□ -0.14
HMGB1-202ENST00000339872 ZNF446Q9NWS9 450 aa14.2□□□□□ -0.14
HMGB1-202ENST00000339872 WDR3Q9UNX4 943 aaKnown RBP eCLIP14.2□□□□□ -0.14
HMGB1-202ENST00000339872 PTCH2Q9Y6C5 1203 aa14.2□□□□□ -0.14
HMGB1-202ENST00000339872 CCDC66A2RUB6 948 aa14.2□□□□□ -0.14
HMGB1-202ENST00000339872 M0QYV0 167 aa14.2□□□□□ -0.14
HMGB1-202ENST00000339872 SEC31AO94979 1220 aaKnown RBP14.2□□□□□ -0.14
HMGB1-202ENST00000339872 FGGP02679 453 aa14.2□□□□□ -0.14
HMGB1-202ENST00000339872 CTNNA1P35221 906 aaKnown RBP14.2□□□□□ -0.14
HMGB1-202ENST00000339872 MLH1P40692 756 aa14.2□□□□□ -0.14
HMGB1-202ENST00000339872 CYP4A22Q5TCH4 519 aa14.2□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms