RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 DSG1Q02413 1049 aa14.18□□□□□ -0.14
CCDC88C-201ENST00000331194 TTLL12Q14166 644 aaPredicted RBP14.18□□□□□ -0.14
CCDC88C-201ENST00000331194 CCDC89Q8N998 374 aa14.18□□□□□ -0.14
CCDC88C-201ENST00000331194 TSSK1BQ9BXA7 367 aa14.18□□□□□ -0.14
CCDC88C-201ENST00000331194 STK32BQ9NY57 414 aa14.18□□□□□ -0.14
CCDC88C-201ENST00000331194 DNPEPQ9ULA0 475 aa14.18□□□□□ -0.14
CCDC88C-201ENST00000331194 CYP3A7-CYP3A51PA0A087WV96 503 aa14.17□□□□□ -0.14
CCDC88C-201ENST00000331194 PIK3CDO00329 1044 aa14.17□□□□□ -0.14
CCDC88C-201ENST00000331194 SLITRK3O94933 977 aa14.17□□□□□ -0.14
CCDC88C-201ENST00000331194 PGM3O95394 542 aa14.17□□□□□ -0.14
CCDC88C-201ENST00000331194 GZMAP12544 262 aa14.17□□□□□ -0.14
CCDC88C-201ENST00000331194 ADRA2BP18089 450 aa14.17□□□□□ -0.14
CCDC88C-201ENST00000331194 CYP3A7P24462 503 aa14.17□□□□□ -0.14
CCDC88C-201ENST00000331194 NOVP48745 357 aa14.17□□□□□ -0.14
CCDC88C-201ENST00000331194 CDK7P50613 346 aa14.17□□□□□ -0.14
CCDC88C-201ENST00000331194 VAMP7P51809 220 aa14.17□□□□□ -0.14
CCDC88C-201ENST00000331194 GSTO1P78417 241 aa14.17□□□□□ -0.14
CCDC88C-201ENST00000331194 GPS1Q13098 491 aa14.17□□□□□ -0.14
CCDC88C-201ENST00000331194 TFDP1Q14186 410 aa14.17□□□□□ -0.14
CCDC88C-201ENST00000331194 TCEAL1Q15170 157 aa14.17□□□□□ -0.14
CCDC88C-201ENST00000331194 DBN1Q16643 649 aa14.17□□□□□ -0.14
CCDC88C-201ENST00000331194 LPCAT4Q643R3 524 aa14.17□□□□□ -0.14
CCDC88C-201ENST00000331194 OLFML2BQ68BL8 750 aa14.17□□□□□ -0.14
CCDC88C-201ENST00000331194 FAM71AQ8IYT1 594 aa14.17□□□□□ -0.14
CCDC88C-201ENST00000331194 RBM15BQ8NDT2 890 aaKnown RBP14.17□□□□□ -0.14
CCDC88C-201ENST00000331194 MORC4Q8TE76 937 aa14.17□□□□□ -0.14
CCDC88C-201ENST00000331194 SKA1Q96BD8 255 aa14.17□□□□□ -0.14
CCDC88C-201ENST00000331194 ANKRD2Q9GZV1 360 aa14.17□□□□□ -0.14
CCDC88C-201ENST00000331194 HSFX1Q9UBD0 423 aa14.17□□□□□ -0.14
CCDC88C-201ENST00000331194 SMCHD1A6NHR9 2005 aa14.17□□□□□ -0.14
CCDC88C-201ENST00000331194 SORBS2O94875 1100 aaKnown RBP14.17□□□□□ -0.14
CCDC88C-201ENST00000331194 BGNP21810 368 aa14.17□□□□□ -0.14
CCDC88C-201ENST00000331194 TPTE2Q6XPS3 522 aa14.17□□□□□ -0.14
CCDC88C-201ENST00000331194 TTC17Q96AE7 1141 aa14.17□□□□□ -0.14
CCDC88C-201ENST00000331194 CCDC127Q96BQ5 260 aa14.17□□□□□ -0.14
CCDC88C-201ENST00000331194 ACSF2Q96CM8 615 aaPredicted RBP14.17□□□□□ -0.14
CCDC88C-201ENST00000331194 HIC2Q96JB3 615 aa14.17□□□□□ -0.14
CCDC88C-201ENST00000331194 DDX43Q9NXZ2 648 aaKnown RBP14.17□□□□□ -0.14
CCDC88C-201ENST00000331194 CHMP2BQ9UQN3 213 aa14.17□□□□□ -0.14
CCDC88C-201ENST00000331194 IRS2Q9Y4H2 1338 aa14.17□□□□□ -0.14
CCDC88C-201ENST00000331194 EIF3DO15371 548 aaKnown RBP eCLIP14.17□□□□□ -0.14
CCDC88C-201ENST00000331194 OATP04181 439 aa14.17□□□□□ -0.14
CCDC88C-201ENST00000331194 FAM200BP0CF97 657 aa14.17□□□□□ -0.14
CCDC88C-201ENST00000331194 TCF4P15884 667 aa14.17□□□□□ -0.14
CCDC88C-201ENST00000331194 ZNF76P36508 570 aa14.17□□□□□ -0.14
CCDC88C-201ENST00000331194 ARSEP51690 589 aa14.17□□□□□ -0.14
CCDC88C-201ENST00000331194 GPX6P59796 221 aa14.17□□□□□ -0.14
CCDC88C-201ENST00000331194 CDK16Q00536 496 aa14.17□□□□□ -0.14
CCDC88C-201ENST00000331194 KLF1Q13351 362 aaPredicted RBP14.17□□□□□ -0.14
CCDC88C-201ENST00000331194 RASA2Q15283 850 aa14.17□□□□□ -0.14
CCDC88C-201ENST00000331194 ZFYVE27Q5T4F4 411 aa14.17□□□□□ -0.14
CCDC88C-201ENST00000331194 PPP1R18Q6NYC8 613 aa14.17□□□□□ -0.14
CCDC88C-201ENST00000331194 CCDC62Q6P9F0 684 aa14.17□□□□□ -0.14
CCDC88C-201ENST00000331194 SPATA24Q86W54 205 aa14.17□□□□□ -0.14
CCDC88C-201ENST00000331194 RBM12BQ8IXT5 1001 aaKnown RBP14.17□□□□□ -0.14
CCDC88C-201ENST00000331194 PYDC1Q8WXC3 89 aa14.17□□□□□ -0.14
CCDC88C-201ENST00000331194 NCSTNQ92542 709 aa14.17□□□□□ -0.14
CCDC88C-201ENST00000331194 MPP4Q96JB8 637 aa14.17□□□□□ -0.14
CCDC88C-201ENST00000331194 NR1H4Q96RI1 486 aaPredicted RBP14.17□□□□□ -0.14
CCDC88C-201ENST00000331194 PLVAPQ9BX97 442 aa14.17□□□□□ -0.14
CCDC88C-201ENST00000331194 ZNF148Q9UQR1 794 aa14.17□□□□□ -0.14
CCDC88C-201ENST00000331194 IFNB1P01574 187 aa14.16□□□□□ -0.14
CCDC88C-201ENST00000331194 LDHCP07864 332 aa14.16□□□□□ -0.14
CCDC88C-201ENST00000331194 EEF2P13639 858 aaKnown RBP14.16□□□□□ -0.14
CCDC88C-201ENST00000331194 LARP7Q4G0J3 582 aaKnown RBP eCLIP14.16□□□□□ -0.14
CCDC88C-201ENST00000331194 SYDE2Q5VT97 1194 aa14.16□□□□□ -0.14
CCDC88C-201ENST00000331194 MARK2Q7KZI7 788 aaKnown RBP14.16□□□□□ -0.14
CCDC88C-201ENST00000331194 TRIM42Q8IWZ5 723 aa14.16□□□□□ -0.14
CCDC88C-201ENST00000331194 NAT14Q8WUY8 206 aa14.16□□□□□ -0.14
CCDC88C-201ENST00000331194 USP6NLQ92738 828 aa14.16□□□□□ -0.14
CCDC88C-201ENST00000331194 CCDC97Q96F63 343 aaPredicted RBP14.16□□□□□ -0.14
CCDC88C-201ENST00000331194 FAM163AQ96GL9 167 aaPredicted RBP14.16□□□□□ -0.14
CCDC88C-201ENST00000331194 YIPF2Q9BWQ6 316 aa14.16□□□□□ -0.14
CCDC88C-201ENST00000331194 OSBPL8Q9BZF1 889 aa14.16□□□□□ -0.14
CCDC88C-201ENST00000331194 MEI4A8MW99 385 aa14.16□□□□□ -0.14
CCDC88C-201ENST00000331194 GRIN3BO60391 1043 aa14.16□□□□□ -0.14
CCDC88C-201ENST00000331194 APBA3O96018 575 aa14.16□□□□□ -0.14
CCDC88C-201ENST00000331194 DLDP09622 509 aaKnown RBP14.16□□□□□ -0.14
CCDC88C-201ENST00000331194 KITP10721 976 aa14.16□□□□□ -0.14
CCDC88C-201ENST00000331194 GAP43P17677 238 aa14.16□□□□□ -0.14
CCDC88C-201ENST00000331194 SFT2D3Q587I9 215 aa14.16□□□□□ -0.14
CCDC88C-201ENST00000331194 ACBD5Q5T8D3 534 aaPredicted RBP14.16□□□□□ -0.14
CCDC88C-201ENST00000331194 SESTD1Q86VW0 696 aa14.16□□□□□ -0.14
CCDC88C-201ENST00000331194 MBOAT7Q96N66 472 aa14.16□□□□□ -0.14
CCDC88C-201ENST00000331194 HAPLN3Q96S86 360 aa14.16□□□□□ -0.14
CCDC88C-201ENST00000331194 CENPKQ9BS16 269 aa14.16□□□□□ -0.14
CCDC88C-201ENST00000331194 PI4K2AQ9BTU6 479 aa14.16□□□□□ -0.14
CCDC88C-201ENST00000331194 TOPORSQ9NS56 1045 aaPredicted RBP14.16□□□□□ -0.14
CCDC88C-201ENST00000331194 UVRAGQ9P2Y5 699 aa14.16□□□□□ -0.14
CCDC88C-201ENST00000331194 ZNFX1Q9P2E3 1918 aaKnown RBP14.15□□□□□ -0.14
CCDC88C-201ENST00000331194 DCAF8L1A6NGE4 600 aa14.15□□□□□ -0.14
CCDC88C-201ENST00000331194 ZNF862O60290 1169 aa14.15□□□□□ -0.14
CCDC88C-201ENST00000331194 CYP3A4P08684 503 aa14.15□□□□□ -0.14
CCDC88C-201ENST00000331194 KRT5P13647 590 aa14.15□□□□□ -0.14
CCDC88C-201ENST00000331194 GSTA3Q16772 222 aa14.15□□□□□ -0.14
CCDC88C-201ENST00000331194 MSS51Q4VC12 460 aa14.15□□□□□ -0.14
CCDC88C-201ENST00000331194 RNF111Q6ZNA4 994 aa14.15□□□□□ -0.14
CCDC88C-201ENST00000331194 SYDE1Q6ZW31 735 aaPredicted RBP14.15□□□□□ -0.14
CCDC88C-201ENST00000331194 HIPK4Q8NE63 616 aa14.15□□□□□ -0.14
CCDC88C-201ENST00000331194 CRYGNQ8WXF5 182 aa14.15□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms