RNA–Protein interactions for RNA: ENST00000317840.9

COL3A1-202, Transcript of collagen type III alpha 1 chain, humanhuman

TSL 2 BASIC

Gene COL3A1, Length 3,873 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-202ENST00000317840 C12orf50Q8NA57 414 aaPredicted RBP11.1□□□□□ -0.63
COL3A1-202ENST00000317840 TMC2Q8TDI7 906 aa11.1□□□□□ -0.63
COL3A1-202ENST00000317840 LPAR1Q92633 364 aa11.1□□□□□ -0.63
COL3A1-202ENST00000317840 STMN2Q93045 179 aa11.1□□□□□ -0.63
COL3A1-202ENST00000317840 TTC25Q96NG3 672 aa11.1□□□□□ -0.63
COL3A1-202ENST00000317840 CALN1Q9BXU9 219 aa11.1□□□□□ -0.63
COL3A1-202ENST00000317840 NXF1Q9UBU9 619 aaKnown RBP11.1□□□□□ -0.63
COL3A1-202ENST00000317840 PCSK1NQ9UHG2 260 aa11.1□□□□□ -0.63
COL3A1-202ENST00000317840 IP6K2Q9UHH9 426 aa11.1□□□□□ -0.63
COL3A1-202ENST00000317840 BANF1O75531 89 aa11.09□□□□□ -0.63
COL3A1-202ENST00000317840 STAM2O75886 525 aa11.09□□□□□ -0.63
COL3A1-202ENST00000317840 CETPP11597 493 aa11.09□□□□□ -0.63
COL3A1-202ENST00000317840 TAC1P20366 129 aa11.09□□□□□ -0.63
COL3A1-202ENST00000317840 YWHAGP61981 247 aaKnown RBP eCLIP11.09□□□□□ -0.63
COL3A1-202ENST00000317840 SNRPFP62306 86 aaKnown RBP11.09□□□□□ -0.63
COL3A1-202ENST00000317840 RPL7AP62424 266 aaKnown RBP11.09□□□□□ -0.63
COL3A1-202ENST00000317840 MXRA7P84157 204 aa11.09□□□□□ -0.63
COL3A1-202ENST00000317840 TFAMQ00059 246 aaKnown RBP11.09□□□□□ -0.63
COL3A1-202ENST00000317840 FASTKD3Q14CZ7 662 aaKnown RBP11.09□□□□□ -0.63
COL3A1-202ENST00000317840 TSNAXIP1Q2TAA8 658 aa11.09□□□□□ -0.63
COL3A1-202ENST00000317840 MFSD7Q6UXD7 560 aa11.09□□□□□ -0.63
COL3A1-202ENST00000317840 FEZF2Q8TBJ5 459 aa11.09□□□□□ -0.63
COL3A1-202ENST00000317840 SLC7A3Q8WY07 619 aa11.09□□□□□ -0.63
COL3A1-202ENST00000317840 TTC17Q96AE7 1141 aa11.09□□□□□ -0.63
COL3A1-202ENST00000317840 MPHOSPH6Q99547 160 aaKnown RBP11.09□□□□□ -0.63
COL3A1-202ENST00000317840 TARS2Q9BW92 718 aaKnown RBP11.09□□□□□ -0.63
COL3A1-202ENST00000317840 SAE1Q9UBE0 346 aaPredicted RBP11.09□□□□□ -0.63
COL3A1-202ENST00000317840 MROH7Q68CQ1 1323 aa11.09□□□□□ -0.63
COL3A1-202ENST00000317840 UNC5CO95185 931 aa11.09□□□□□ -0.63
COL3A1-202ENST00000317840 PGK2P07205 417 aa11.09□□□□□ -0.63
COL3A1-202ENST00000317840 FOXN2P32314 431 aa11.09□□□□□ -0.63
COL3A1-202ENST00000317840 RPA3P35244 121 aaPredicted RBP11.09□□□□□ -0.63
COL3A1-202ENST00000317840 PSMC4P43686 418 aa11.09□□□□□ -0.63
COL3A1-202ENST00000317840 CUL2Q13617 745 aa11.09□□□□□ -0.63
COL3A1-202ENST00000317840 KCNT1Q5JUK3 1230 aa11.09□□□□□ -0.63
COL3A1-202ENST00000317840 C9orf131Q5VYM1 1079 aa11.09□□□□□ -0.63
COL3A1-202ENST00000317840 CAPRIN2Q6IMN6 1127 aaKnown RBP11.09□□□□□ -0.63
COL3A1-202ENST00000317840 CCDC62Q6P9F0 684 aa11.09□□□□□ -0.63
COL3A1-202ENST00000317840 ANO5Q75V66 913 aa11.09□□□□□ -0.63
COL3A1-202ENST00000317840 BSNDQ8WZ55 320 aa11.09□□□□□ -0.63
COL3A1-202ENST00000317840 DDX27Q96GQ7 796 aaKnown RBP11.09□□□□□ -0.63
COL3A1-202ENST00000317840 TIPINQ9BVW5 301 aa11.09□□□□□ -0.63
COL3A1-202ENST00000317840 MOV10L1Q9BXT6 1211 aaKnown RBP11.09□□□□□ -0.63
COL3A1-202ENST00000317840 YIPF3Q9GZM5 350 aa11.09□□□□□ -0.63
COL3A1-202ENST00000317840 ANKEF1Q9NU02 776 aa11.09□□□□□ -0.63
COL3A1-202ENST00000317840 PSTPIP1O43586 416 aa11.09□□□□□ -0.63
COL3A1-202ENST00000317840 DGAT1O75907 488 aa11.09□□□□□ -0.63
COL3A1-202ENST00000317840 PSAPP07602 524 aa11.09□□□□□ -0.63
COL3A1-202ENST00000317840 ANKRD20A2Q5SQ80 823 aa11.09□□□□□ -0.63
COL3A1-202ENST00000317840 ANKRD20A1Q5TYW2 823 aa11.09□□□□□ -0.63
COL3A1-202ENST00000317840 TRAF3IP1Q8TDR0 691 aaPredicted RBP11.09□□□□□ -0.63
COL3A1-202ENST00000317840 ZBTB45Q96K62 511 aaPredicted RBP11.09□□□□□ -0.63
COL3A1-202ENST00000317840 TEX13BQ9BXU2 312 aa11.09□□□□□ -0.63
COL3A1-202ENST00000317840 MAK16Q9BXY0 300 aaKnown RBP11.09□□□□□ -0.63
COL3A1-202ENST00000317840 ACAD9Q9H845 621 aa11.09□□□□□ -0.63
COL3A1-202ENST00000317840 CCNE2O96020 404 aa11.08□□□□□ -0.64
COL3A1-202ENST00000317840 MT-ND3P03897 115 aa11.08□□□□□ -0.64
COL3A1-202ENST00000317840 PSMA2P25787 234 aa11.08□□□□□ -0.64
COL3A1-202ENST00000317840 SSTR1P30872 391 aa11.08□□□□□ -0.64
COL3A1-202ENST00000317840 GTF2H1P32780 548 aa11.08□□□□□ -0.64
COL3A1-202ENST00000317840 DSG3P32926 999 aa11.08□□□□□ -0.64
COL3A1-202ENST00000317840 NLRP11P59045 1033 aaKnown RBP11.08□□□□□ -0.64
COL3A1-202ENST00000317840 FKBP1AP62942 108 aaKnown RBP11.08□□□□□ -0.64
COL3A1-202ENST00000317840 CNTN2Q02246 1040 aa11.08□□□□□ -0.64
COL3A1-202ENST00000317840 MAMLD1Q13495 774 aa11.08□□□□□ -0.64
COL3A1-202ENST00000317840 RIPK1Q13546 671 aa11.08□□□□□ -0.64
COL3A1-202ENST00000317840 ZRSR2Q15696 482 aaKnown RBP11.08□□□□□ -0.64
COL3A1-202ENST00000317840 CYP4A22Q5TCH4 519 aa11.08□□□□□ -0.64
COL3A1-202ENST00000317840 C3orf62Q6ZUJ4 267 aa11.08□□□□□ -0.64
COL3A1-202ENST00000317840 RFX8Q6ZV50 586 aa11.08□□□□□ -0.64
COL3A1-202ENST00000317840 PDIK1LQ8N165 341 aa11.08□□□□□ -0.64
COL3A1-202ENST00000317840 EXD1Q8NHP7 514 aa11.08□□□□□ -0.64
COL3A1-202ENST00000317840 PDCD2LQ9BRP1 358 aa11.08□□□□□ -0.64
COL3A1-202ENST00000317840 KIAA1586Q9HCI6 787 aa11.08□□□□□ -0.64
COL3A1-202ENST00000317840 AVENQ9NQS1 362 aaPredicted RBP11.08□□□□□ -0.64
COL3A1-202ENST00000317840 SMG5Q9UPR3 1016 aaKnown RBP11.08□□□□□ -0.64
COL3A1-202ENST00000317840 RIPK3Q9Y572 518 aa11.08□□□□□ -0.64
COL3A1-202ENST00000317840 ZNF541Q9H0D2 1346 aa11.08□□□□□ -0.64
COL3A1-202ENST00000317840 F8VP50 259 aa11.08□□□□□ -0.64
COL3A1-202ENST00000317840 INO80B-WBP1J3KQ70 363 aa11.08□□□□□ -0.64
COL3A1-202ENST00000317840 ATP5HO75947 161 aa11.08□□□□□ -0.64
COL3A1-202ENST00000317840 INHBAP08476 426 aa11.08□□□□□ -0.64
COL3A1-202ENST00000317840 CFHP08603 1231 aa11.08□□□□□ -0.64
COL3A1-202ENST00000317840 PRKCEQ02156 737 aa11.08□□□□□ -0.64
COL3A1-202ENST00000317840 NCOA4Q13772 614 aa11.08□□□□□ -0.64
COL3A1-202ENST00000317840 PGM5Q15124 567 aa11.08□□□□□ -0.64
COL3A1-202ENST00000317840 TRIM72Q6ZMU5 477 aa11.08□□□□□ -0.64
COL3A1-202ENST00000317840 RCOR2Q8IZ40 523 aa11.08□□□□□ -0.64
COL3A1-202ENST00000317840 PPP1R14CQ8TAE6 165 aa11.08□□□□□ -0.64
COL3A1-202ENST00000317840 SPIRE2Q8WWL2 714 aa11.08□□□□□ -0.64
COL3A1-202ENST00000317840 INO80BQ9C086 356 aaPredicted RBP11.08□□□□□ -0.64
COL3A1-202ENST00000317840 H0YCG3 227 aa11.08□□□□□ -0.64
COL3A1-202ENST00000317840 DHX15O43143 795 aaKnown RBP11.08□□□□□ -0.64
COL3A1-202ENST00000317840 LUC7L3O95232 432 aaKnown RBP11.08□□□□□ -0.64
COL3A1-202ENST00000317840 EPHB2P29323 1055 aa11.08□□□□□ -0.64
COL3A1-202ENST00000317840 NCKAP1LP55160 1127 aa11.08□□□□□ -0.64
COL3A1-202ENST00000317840 WDR4P57081 412 aaKnown RBP11.08□□□□□ -0.64
COL3A1-202ENST00000317840 STXBP2Q15833 593 aa11.08□□□□□ -0.64
COL3A1-202ENST00000317840 APBB1IPQ7Z5R6 666 aaPredicted RBP11.08□□□□□ -0.64
COL3A1-202ENST00000317840 ZNF677Q86XU0 584 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms