RNA–Protein interactions for RNA: ENST00000316707.10

PTPN13-201, Transcript of protein tyrosine phosphatase, non-receptor type 13, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PTPN13, Length 7,546 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN13-201ENST00000316707 ATG4AQ8WYN0 398 aa5.03□□□□□ -1.6
PTPN13-201ENST00000316707 HAUS1Q96CS2 278 aa5.03□□□□□ -1.6
PTPN13-201ENST00000316707 PAFAH2Q99487 392 aa5.03□□□□□ -1.6
PTPN13-201ENST00000316707 TMEM120AQ9BXJ8 343 aa5.03□□□□□ -1.6
PTPN13-201ENST00000316707 ARL8BQ9NVJ2 186 aa5.03□□□□□ -1.6
PTPN13-201ENST00000316707 DNAJC17Q9NVM6 304 aaKnown RBP5.03□□□□□ -1.6
PTPN13-201ENST00000316707 SLAIN2Q9P270 581 aa5.03□□□□□ -1.6
PTPN13-201ENST00000316707 IP6K2Q9UHH9 426 aa5.03□□□□□ -1.6
PTPN13-201ENST00000316707 AKAP11Q9UKA4 1901 aa5.03□□□□□ -1.6
PTPN13-201ENST00000316707 MEIS2O14770 477 aa5.02□□□□□ -1.61
PTPN13-201ENST00000316707 OPHN1O60890 802 aa5.02□□□□□ -1.61
PTPN13-201ENST00000316707 SLITRK3O94933 977 aa5.02□□□□□ -1.61
PTPN13-201ENST00000316707 DHRS4L1P0CG22 281 aa5.02□□□□□ -1.61
PTPN13-201ENST00000316707 GPC3P51654 580 aa5.02□□□□□ -1.61
PTPN13-201ENST00000316707 PPP3CAQ08209 521 aa5.02□□□□□ -1.61
PTPN13-201ENST00000316707 PPP2R5CQ13362 524 aa5.02□□□□□ -1.61
PTPN13-201ENST00000316707 SLC1A5Q15758 541 aa5.02□□□□□ -1.61
PTPN13-201ENST00000316707 RASSF3Q86WH2 238 aa5.02□□□□□ -1.61
PTPN13-201ENST00000316707 TMEM126BQ8IUX1 230 aa5.02□□□□□ -1.61
PTPN13-201ENST00000316707 SKA1Q96BD8 255 aa5.02□□□□□ -1.61
PTPN13-201ENST00000316707 BTG4Q9NY30 223 aa5.02□□□□□ -1.61
PTPN13-201ENST00000316707 HSPBP1Q9NZL4 362 aa5.02□□□□□ -1.61
PTPN13-201ENST00000316707 PPARGC1AQ9UBK2 798 aaKnown RBP5.02□□□□□ -1.61
PTPN13-201ENST00000316707 COPEO14579 308 aa5.02□□□□□ -1.61
PTPN13-201ENST00000316707 PPP1R11O60927 126 aaPredicted RBP5.02□□□□□ -1.61
PTPN13-201ENST00000316707 SGPL1O95470 568 aa5.02□□□□□ -1.61
PTPN13-201ENST00000316707 CALB1P05937 261 aa5.02□□□□□ -1.61
PTPN13-201ENST00000316707 INHBAP08476 426 aa5.02□□□□□ -1.61
PTPN13-201ENST00000316707 YY1P25490 414 aa5.02□□□□□ -1.61
PTPN13-201ENST00000316707 KCNA1Q09470 495 aa5.02□□□□□ -1.61
PTPN13-201ENST00000316707 CDC16Q13042 620 aa5.02□□□□□ -1.61
PTPN13-201ENST00000316707 DCTN2Q13561 401 aaKnown RBP5.02□□□□□ -1.61
PTPN13-201ENST00000316707 ZC2HC1CQ53FD0 456 aaPredicted RBP5.02□□□□□ -1.61
PTPN13-201ENST00000316707 RNASEH2BQ5TBB1 312 aaKnown RBP5.02□□□□□ -1.61
PTPN13-201ENST00000316707 RC3H1Q5TC82 1133 aaKnown RBP5.02□□□□□ -1.61
PTPN13-201ENST00000316707 AADACL2Q6P093 401 aa5.02□□□□□ -1.61
PTPN13-201ENST00000316707 POTEAQ6S8J7 498 aa5.02□□□□□ -1.61
PTPN13-201ENST00000316707 HAUS6Q7Z4H7 955 aa5.02□□□□□ -1.61
PTPN13-201ENST00000316707 TXNRD3Q86VQ6 643 aa5.02□□□□□ -1.61
PTPN13-201ENST00000316707 FIZ1Q96SL8 496 aa5.02□□□□□ -1.61
PTPN13-201ENST00000316707 KCNK16Q96T55 309 aa5.02□□□□□ -1.61
PTPN13-201ENST00000316707 TIMMDC1Q9NPL8 285 aa5.02□□□□□ -1.61
PTPN13-201ENST00000316707 GGA1Q9UJY5 639 aa5.02□□□□□ -1.61
PTPN13-201ENST00000316707 DAGLAQ9Y4D2 1042 aa5.02□□□□□ -1.61
PTPN13-201ENST00000316707 F5H6K3 240 aa5.02□□□□□ -1.61
PTPN13-201ENST00000316707 TLR3O15455 904 aaKnown RBP5.02□□□□□ -1.61
PTPN13-201ENST00000316707 IFNB1P01574 187 aa5.02□□□□□ -1.61
PTPN13-201ENST00000316707 CHRNB2P17787 502 aa5.02□□□□□ -1.61
PTPN13-201ENST00000316707 KLRC2P26717 231 aa5.02□□□□□ -1.61
PTPN13-201ENST00000316707 EFHC1Q5JVL4 640 aa5.02□□□□□ -1.61
PTPN13-201ENST00000316707 ARCQ7LC44 396 aa5.02□□□□□ -1.61
PTPN13-201ENST00000316707 DTX3LQ8TDB6 740 aa5.02□□□□□ -1.61
PTPN13-201ENST00000316707 TCP10LQ8TDR4 215 aa5.02□□□□□ -1.61
PTPN13-201ENST00000316707 CNTNAP4Q9C0A0 1308 aa5.02□□□□□ -1.61
PTPN13-201ENST00000316707 PLCH1Q4KWH8 1693 aa5.02□□□□□ -1.61
PTPN13-201ENST00000316707 BBOX1O75936 387 aa5.02□□□□□ -1.61
PTPN13-201ENST00000316707 CETPP11597 493 aa5.02□□□□□ -1.61
PTPN13-201ENST00000316707 BMP3P12645 472 aa5.02□□□□□ -1.61
PTPN13-201ENST00000316707 UQCRBP14927 111 aa5.02□□□□□ -1.61
PTPN13-201ENST00000316707 RPA3P35244 121 aaPredicted RBP5.02□□□□□ -1.61
PTPN13-201ENST00000316707 ARSEP51690 589 aa5.02□□□□□ -1.61
PTPN13-201ENST00000316707 IKQ13123 557 aaPredicted RBP5.02□□□□□ -1.61
PTPN13-201ENST00000316707 PLEKHA7Q6IQ23 1121 aa5.02□□□□□ -1.61
PTPN13-201ENST00000316707 BORAQ6PGQ7 559 aa5.02□□□□□ -1.61
PTPN13-201ENST00000316707 NSMFQ6X4W1 530 aa5.02□□□□□ -1.61
PTPN13-201ENST00000316707 SLC26A11Q86WA9 606 aa5.02□□□□□ -1.61
PTPN13-201ENST00000316707 CRLF3Q8IUI8 442 aa5.02□□□□□ -1.61
PTPN13-201ENST00000316707 POP1Q99575 1024 aaKnown RBP5.02□□□□□ -1.61
PTPN13-201ENST00000316707 TTC1Q99614 292 aa5.02□□□□□ -1.61
PTPN13-201ENST00000316707 TCEAL9Q9UHQ7 104 aa5.02□□□□□ -1.61
PTPN13-201ENST00000316707 SNCAIPQ9Y6H5 919 aa5.02□□□□□ -1.61
PTPN13-201ENST00000316707 SEC23IPQ9Y6Y8 1000 aaKnown RBP5.02□□□□□ -1.61
PTPN13-201ENST00000316707 TRPM3Q9HCF6 1732 aaPredicted RBP5.02□□□□□ -1.61
PTPN13-201ENST00000316707 LIASO43766 372 aa5.02□□□□□ -1.61
PTPN13-201ENST00000316707 DKC1O60832 514 aaKnown RBP eCLIP5.02□□□□□ -1.61
PTPN13-201ENST00000316707 P4HBP07237 508 aaKnown RBP5.02□□□□□ -1.61
PTPN13-201ENST00000316707 STIP1P31948 543 aaKnown RBP5.02□□□□□ -1.61
PTPN13-201ENST00000316707 PIK3CAP42336 1068 aa5.02□□□□□ -1.61
PTPN13-201ENST00000316707 TUBP50607 506 aa5.02□□□□□ -1.61
PTPN13-201ENST00000316707 GTF2BQ00403 316 aa5.02□□□□□ -1.61
PTPN13-201ENST00000316707 GPS1Q13098 491 aa5.02□□□□□ -1.61
PTPN13-201ENST00000316707 DLGAP5Q15398 846 aa5.02□□□□□ -1.61
PTPN13-201ENST00000316707 CNPY1Q3B7I2 92 aa5.02□□□□□ -1.61
PTPN13-201ENST00000316707 MMEL1Q495T6 779 aa5.02□□□□□ -1.61
PTPN13-201ENST00000316707 ACBD5Q5T8D3 534 aaPredicted RBP5.02□□□□□ -1.61
PTPN13-201ENST00000316707 POLNQ7Z5Q5 900 aa5.02□□□□□ -1.61
PTPN13-201ENST00000316707 ARHGEF19Q8IW93 802 aa5.02□□□□□ -1.61
PTPN13-201ENST00000316707 ALLCQ8N6M5 410 aa5.02□□□□□ -1.61
PTPN13-201ENST00000316707 RDH13Q8NBN7 331 aa5.02□□□□□ -1.61
PTPN13-201ENST00000316707 GMCL1Q96IK5 515 aa5.02□□□□□ -1.61
PTPN13-201ENST00000316707 KCNQ5Q9NR82 932 aa5.02□□□□□ -1.61
PTPN13-201ENST00000316707 MKS1Q9NXB0 559 aa5.02□□□□□ -1.61
PTPN13-201ENST00000316707 HACD3Q9P035 362 aa5.02□□□□□ -1.61
PTPN13-201ENST00000316707 FRMD4AQ9P2Q2 1039 aaPredicted RBP5.02□□□□□ -1.61
PTPN13-201ENST00000316707 R3HDM2Q9Y2K5 976 aaKnown RBP5.02□□□□□ -1.61
PTPN13-201ENST00000316707 MAD1L1Q9Y6D9 718 aa5.02□□□□□ -1.61
PTPN13-201ENST00000316707 FAM86B1E9PN63 330 aa5.02□□□□□ -1.61
PTPN13-201ENST00000316707 PSMD10O75832 226 aa5.02□□□□□ -1.61
PTPN13-201ENST00000316707 ITGA2BP08514 1039 aa5.02□□□□□ -1.61
PTPN13-201ENST00000316707 FAM86B2P0C5J1 330 aa5.02□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 104.4 ms