RNA–Protein interactions for RNA: ENST00000316407.8

USF3-201, Transcript of upstream transcription factor family member 3, humanhuman

APPRIS P2 TSL 5 BASIC

Gene USF3, Length 13,708 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-201ENST00000316407 THUMPD3Q9BV44 507 aaKnown RBP9.11□□□□□ -0.95
USF3-201ENST00000316407 KRT84Q9NSB2 600 aa9.11□□□□□ -0.95
USF3-201ENST00000316407 SLC39A10Q9ULF5 831 aa9.11□□□□□ -0.95
USF3-201ENST00000316407 GEMIN4P57678 1058 aaKnown RBP9.11□□□□□ -0.95
USF3-201ENST00000316407 MMRN1Q13201 1228 aa9.11□□□□□ -0.95
USF3-201ENST00000316407 DGCR6Q14129 220 aa9.11□□□□□ -0.95
USF3-201ENST00000316407 KLHL23Q8NBE8 558 aa9.11□□□□□ -0.95
USF3-201ENST00000316407 SPATA18Q8TC71 538 aa9.11□□□□□ -0.95
USF3-201ENST00000316407 ZKSCAN4Q969J2 545 aaPredicted RBP9.11□□□□□ -0.95
USF3-201ENST00000316407 SP110Q9HB58 689 aa9.11□□□□□ -0.95
USF3-201ENST00000316407 RTN2O75298 545 aa9.11□□□□□ -0.95
USF3-201ENST00000316407 NR1D2Q14995 579 aa9.11□□□□□ -0.95
USF3-201ENST00000316407 RCSD1Q6JBY9 416 aa9.11□□□□□ -0.95
USF3-201ENST00000316407 APOL5Q9BWW9 433 aa9.11□□□□□ -0.95
USF3-201ENST00000316407 DGCR6LQ9BY27 220 aa9.11□□□□□ -0.95
USF3-201ENST00000316407 PARVAQ9NVD7 372 aa9.11□□□□□ -0.95
USF3-201ENST00000316407 A2MP01023 1474 aa9.11□□□□□ -0.95
USF3-201ENST00000316407 KIAA0232Q92628 1395 aa9.11□□□□□ -0.95
USF3-201ENST00000316407 PARP10Q53GL7 1025 aa9.11□□□□□ -0.95
USF3-201ENST00000316407 PKN3Q6P5Z2 889 aa9.11□□□□□ -0.95
USF3-201ENST00000316407 TMEM120AQ9BXJ8 343 aa9.11□□□□□ -0.95
USF3-201ENST00000316407 PTGES3LE9PB15 166 aa9.11□□□□□ -0.95
USF3-201ENST00000316407 EIF4A1P60842 406 aaKnown RBP9.11□□□□□ -0.95
USF3-201ENST00000316407 NDUFA5Q16718 116 aa9.11□□□□□ -0.95
USF3-201ENST00000316407 KLHL12Q53G59 568 aa9.11□□□□□ -0.95
USF3-201ENST00000316407 ZNF667Q5HYK9 610 aa9.11□□□□□ -0.95
USF3-201ENST00000316407 OR6Y1Q8NGX8 325 aa9.11□□□□□ -0.95
USF3-201ENST00000316407 LENG1Q96BZ8 264 aaPredicted RBP9.11□□□□□ -0.95
USF3-201ENST00000316407 MAGEB18Q96M61 343 aa9.11□□□□□ -0.95
USF3-201ENST00000316407 ZNF184Q99676 751 aaPredicted RBP9.11□□□□□ -0.95
USF3-201ENST00000316407 GGPS1O95749 300 aa9.11□□□□□ -0.95
USF3-201ENST00000316407 PECAM1P16284 738 aaPredicted RBP9.11□□□□□ -0.95
USF3-201ENST00000316407 C4BPBP20851 252 aa9.11□□□□□ -0.95
USF3-201ENST00000316407 MAGEA4P43358 317 aa9.11□□□□□ -0.95
USF3-201ENST00000316407 GLRBP48167 497 aa9.11□□□□□ -0.95
USF3-201ENST00000316407 NCF4Q15080 339 aa9.11□□□□□ -0.95
USF3-201ENST00000316407 SPIRE2Q8WWL2 714 aa9.11□□□□□ -0.95
USF3-201ENST00000316407 SGF29Q96ES7 293 aa9.11□□□□□ -0.95
USF3-201ENST00000316407 TMEM117Q9H0C3 514 aa9.11□□□□□ -0.95
USF3-201ENST00000316407 BFARQ9NZS9 450 aa9.11□□□□□ -0.95
USF3-201ENST00000316407 MBD2Q9UBB5 411 aa9.11□□□□□ -0.95
USF3-201ENST00000316407 SASH1O94885 1247 aa9.1□□□□□ -0.95
USF3-201ENST00000316407 PSAPP07602 524 aa9.1□□□□□ -0.95
USF3-201ENST00000316407 POLD3Q15054 466 aaPredicted RBP9.1□□□□□ -0.95
USF3-201ENST00000316407 CHID1Q9BWS9 393 aa9.1□□□□□ -0.95
USF3-201ENST00000316407 KLHL1Q9NR64 748 aa9.1□□□□□ -0.95
USF3-201ENST00000316407 ARHGEF38Q9NXL2 777 aa9.1□□□□□ -0.95
USF3-201ENST00000316407 LRCH1Q9Y2L9 728 aa9.1□□□□□ -0.95
USF3-201ENST00000316407 GMEB1Q9Y692 573 aa9.1□□□□□ -0.95
USF3-201ENST00000316407 CD109Q6YHK3 1445 aa9.1□□□□□ -0.95
USF3-201ENST00000316407 ARHGEF10O15013 1369 aa9.1□□□□□ -0.95
USF3-201ENST00000316407 RGS20O76081 388 aa9.1□□□□□ -0.95
USF3-201ENST00000316407 GJA8P48165 433 aa9.1□□□□□ -0.95
USF3-201ENST00000316407 ABI1Q8IZP0 508 aa9.1□□□□□ -0.95
USF3-201ENST00000316407 USP38Q8NB14 1042 aa9.1□□□□□ -0.95
USF3-201ENST00000316407 SDC4P31431 198 aa9.1□□□□□ -0.95
USF3-201ENST00000316407 NUMBP49757 651 aa9.1□□□□□ -0.95
USF3-201ENST00000316407 VAMP7P51809 220 aa9.1□□□□□ -0.95
USF3-201ENST00000316407 CYP51A1Q16850 503 aa9.1□□□□□ -0.95
USF3-201ENST00000316407 NRBP2Q9NSY0 501 aa9.1□□□□□ -0.95
USF3-201ENST00000316407 EHD3Q9NZN3 535 aa9.1□□□□□ -0.95
USF3-201ENST00000316407 PLEKHG1Q9ULL1 1385 aa9.1□□□□□ -0.95
USF3-201ENST00000316407 FXR1P51114 621 aaKnown RBP eCLIP9.1□□□□□ -0.95
USF3-201ENST00000316407 USP10Q14694 798 aaKnown RBP9.1□□□□□ -0.95
USF3-201ENST00000316407 ACCSLQ4AC99 568 aa9.1□□□□□ -0.95
USF3-201ENST00000316407 PDXDC2PQ6P474 469 aa9.1□□□□□ -0.95
USF3-201ENST00000316407 FAM71DQ8N9W8 422 aa9.1□□□□□ -0.95
USF3-201ENST00000316407 ZNF180Q9UJW8 692 aa9.1□□□□□ -0.95
USF3-201ENST00000316407 USP17L5A8MUK1 530 aa9.1□□□□□ -0.95
USF3-201ENST00000316407 NR5A2O00482 541 aa9.1□□□□□ -0.95
USF3-201ENST00000316407 RPS7P62081 194 aaKnown RBP9.1□□□□□ -0.95
USF3-201ENST00000316407 EIF2B5Q13144 721 aaKnown RBP9.1□□□□□ -0.95
USF3-201ENST00000316407 JADE3Q92613 823 aa9.1□□□□□ -0.95
USF3-201ENST00000316407 OSBP2Q969R2 916 aa9.1□□□□□ -0.95
USF3-201ENST00000316407 SEPHS2Q99611 448 aa9.1□□□□□ -0.95
USF3-201ENST00000316407 TELO2Q9Y4R8 837 aa9.1□□□□□ -0.95
USF3-201ENST00000316407 PLEKHG2Q9H7P9 1386 aa9.1□□□□□ -0.95
USF3-201ENST00000316407 NCF1BA6NI72 391 aaPredicted RBP9.1□□□□□ -0.95
USF3-201ENST00000316407 NCF1CA8MVU1 366 aaPredicted RBP9.1□□□□□ -0.95
USF3-201ENST00000316407 GYPCP04921 128 aa9.1□□□□□ -0.95
USF3-201ENST00000316407 NCF1P14598 390 aaPredicted RBP9.1□□□□□ -0.95
USF3-201ENST00000316407 TALDO1P37837 337 aa9.1□□□□□ -0.95
USF3-201ENST00000316407 ACTR2P61160 394 aa9.1□□□□□ -0.95
USF3-201ENST00000316407 STK4Q13043 487 aa9.1□□□□□ -0.95
USF3-201ENST00000316407 KIAA1841Q6NSI8 718 aa9.1□□□□□ -0.95
USF3-201ENST00000316407 TRIM45Q9H8W5 580 aaPredicted RBP9.1□□□□□ -0.95
USF3-201ENST00000316407 FAM49BQ9NUQ9 324 aa9.1□□□□□ -0.95
USF3-201ENST00000316407 BCORL1Q5H9F3 1711 aa9.1□□□□□ -0.95
USF3-201ENST00000316407 GCP02774 474 aa9.1□□□□□ -0.95
USF3-201ENST00000316407 ITPRIPL1Q6GPH6 555 aa9.1□□□□□ -0.95
USF3-201ENST00000316407 TBC1D10CQ8IV04 446 aa9.1□□□□□ -0.95
USF3-201ENST00000316407 ZCCHC7Q8N3Z6 543 aaKnown RBP9.1□□□□□ -0.95
USF3-201ENST00000316407 XXYLT1Q8NBI6 393 aa9.1□□□□□ -0.95
USF3-201ENST00000316407 WDR60Q8WVS4 1066 aa9.1□□□□□ -0.95
USF3-201ENST00000316407 FAM49AQ9H0Q0 323 aaPredicted RBP9.1□□□□□ -0.95
USF3-201ENST00000316407 GPBP1L1Q9HC44 474 aaPredicted RBP9.1□□□□□ -0.95
USF3-201ENST00000316407 DMAP1Q9NPF5 467 aaPredicted RBP9.1□□□□□ -0.95
USF3-201ENST00000316407 IARS2Q9NSE4 1012 aaKnown RBP9.1□□□□□ -0.95
USF3-201ENST00000316407 POLIQ9UNA4 740 aa9.1□□□□□ -0.95
USF3-201ENST00000316407 POU5F1Q01860 360 aaKnown RBP9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms