RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 SMARCB1Q12824 385 aa16.03■□□□□ 0.16
CCDC88B-201ENST00000301897 ZRSR1Q15695 479 aaKnown RBP16.03■□□□□ 0.16
CCDC88B-201ENST00000301897 RILPL1Q5EBL4 403 aa16.03■□□□□ 0.16
CCDC88B-201ENST00000301897 GPR158Q5T848 1215 aa16.03■□□□□ 0.16
CCDC88B-201ENST00000301897 ATAD1Q8NBU5 361 aa16.03■□□□□ 0.16
CCDC88B-201ENST00000301897 BPIFB1Q8TDL5 484 aa16.03■□□□□ 0.16
CCDC88B-201ENST00000301897 LOXL4Q96JB6 756 aa16.03■□□□□ 0.16
CCDC88B-201ENST00000301897 TASP1Q9H6P5 420 aa16.03■□□□□ 0.16
CCDC88B-201ENST00000301897 EIF4ENIF1Q9NRA8 985 aaKnown RBP16.03■□□□□ 0.16
CCDC88B-201ENST00000301897 RBM12Q9NTZ6 932 aaKnown RBP16.03■□□□□ 0.16
CCDC88B-201ENST00000301897 DSEQ9UL01 958 aa16.03■□□□□ 0.16
CCDC88B-201ENST00000301897 ODF2LQ9ULJ1 636 aa16.03■□□□□ 0.16
CCDC88B-201ENST00000301897 GREB1Q4ZG55 1949 aa16.02■□□□□ 0.16
CCDC88B-201ENST00000301897 CCDC163A0A0D9SF12 145 aa16.02■□□□□ 0.16
CCDC88B-201ENST00000301897 PLA2G4BP0C869 781 aa16.02■□□□□ 0.16
CCDC88B-201ENST00000301897 SOX9P48436 509 aa16.02■□□□□ 0.16
CCDC88B-201ENST00000301897 SLC12A3P55017 1021 aa16.02■□□□□ 0.16
CCDC88B-201ENST00000301897 ATP2C1P98194 919 aaPredicted RBP16.02■□□□□ 0.16
CCDC88B-201ENST00000301897 SPAG1Q07617 926 aa16.02■□□□□ 0.16
CCDC88B-201ENST00000301897 CCINQ13939 588 aa16.02■□□□□ 0.16
CCDC88B-201ENST00000301897 ENOX2Q16206 610 aaKnown RBP16.02■□□□□ 0.16
CCDC88B-201ENST00000301897 TAF12Q16514 161 aa16.02■□□□□ 0.16
CCDC88B-201ENST00000301897 IL17AQ16552 155 aa16.02■□□□□ 0.16
CCDC88B-201ENST00000301897 ITPRIPL2Q3MIP1 535 aa16.02■□□□□ 0.16
CCDC88B-201ENST00000301897 STXBP5Q5T5C0 1151 aa16.02■□□□□ 0.16
CCDC88B-201ENST00000301897 SPATA1Q5VX52 437 aa16.02■□□□□ 0.16
CCDC88B-201ENST00000301897 HEATR6Q6AI08 1181 aaKnown RBP16.02■□□□□ 0.16
CCDC88B-201ENST00000301897 Q6ZS52 159 aa16.02■□□□□ 0.16
CCDC88B-201ENST00000301897 C2orf15Q8WU43 125 aaKnown RBP16.02■□□□□ 0.16
CCDC88B-201ENST00000301897 SENP8Q96LD8 212 aa16.02■□□□□ 0.16
CCDC88B-201ENST00000301897 MKNK1Q9BUB5 465 aa16.02■□□□□ 0.16
CCDC88B-201ENST00000301897 CRISPLD1Q9H336 500 aa16.02■□□□□ 0.16
CCDC88B-201ENST00000301897 SLC27A5Q9Y2P5 690 aa16.02■□□□□ 0.16
CCDC88B-201ENST00000301897 DERAQ9Y315 318 aa16.02■□□□□ 0.16
CCDC88B-201ENST00000301897 ATG13O75143 517 aa16.01■□□□□ 0.15
CCDC88B-201ENST00000301897 PIGRP01833 764 aa16.01■□□□□ 0.15
CCDC88B-201ENST00000301897 CYP11A1P05108 521 aa16.01■□□□□ 0.15
CCDC88B-201ENST00000301897 MCM2P49736 904 aa16.01■□□□□ 0.15
CCDC88B-201ENST00000301897 LIMK1P53667 647 aa16.01■□□□□ 0.15
CCDC88B-201ENST00000301897 AMPD2Q01433 879 aa16.01■□□□□ 0.15
CCDC88B-201ENST00000301897 DMWDQ09019 674 aa16.01■□□□□ 0.15
CCDC88B-201ENST00000301897 PON2Q15165 354 aa16.01■□□□□ 0.15
CCDC88B-201ENST00000301897 ARL6IP4Q66PJ3 421 aaKnown RBP16.01■□□□□ 0.15
CCDC88B-201ENST00000301897 IL31Q6EBC2 164 aa16.01■□□□□ 0.15
CCDC88B-201ENST00000301897 TXNDC11Q6PKC3 985 aa16.01■□□□□ 0.15
CCDC88B-201ENST00000301897 FAM160A2Q8N612 972 aaPredicted RBP16.01■□□□□ 0.15
CCDC88B-201ENST00000301897 HAPLN2Q9GZV7 340 aa16.01■□□□□ 0.15
CCDC88B-201ENST00000301897 PPP4R2Q9NY27 417 aa16.01■□□□□ 0.15
CCDC88B-201ENST00000301897 GTSE1Q9NYZ3 720 aa16.01■□□□□ 0.15
CCDC88B-201ENST00000301897 TBX20Q9UMR3 447 aa16.01■□□□□ 0.15
CCDC88B-201ENST00000301897 A0A0B4J269 797 aa16■□□□□ 0.15
CCDC88B-201ENST00000301897 KRT37O76014 449 aa16■□□□□ 0.15
CCDC88B-201ENST00000301897 SEC24BO95487 1268 aa16■□□□□ 0.15
CCDC88B-201ENST00000301897 DDX6P26196 483 aaKnown RBP eCLIP16■□□□□ 0.151e-6■■■■■ 40.7
CCDC88B-201ENST00000301897 TNFSF9P41273 254 aa16■□□□□ 0.15
CCDC88B-201ENST00000301897 GRSF1Q12849 480 aaKnown RBP eCLIP16■□□□□ 0.15
CCDC88B-201ENST00000301897 TMEM132DQ14C87 1099 aa16■□□□□ 0.15
CCDC88B-201ENST00000301897 ST3GAL2Q16842 350 aa16■□□□□ 0.15
CCDC88B-201ENST00000301897 C9orf57Q5W0N0 161 aa16■□□□□ 0.15
CCDC88B-201ENST00000301897 CACNA2D4Q7Z3S7 1137 aa16■□□□□ 0.15
CCDC88B-201ENST00000301897 METTL23Q86XA0 190 aa16■□□□□ 0.15
CCDC88B-201ENST00000301897 THEM5Q8N1Q8 247 aa16■□□□□ 0.15
CCDC88B-201ENST00000301897 EXOC4Q96A65 974 aa16■□□□□ 0.15
CCDC88B-201ENST00000301897 AK8Q96MA6 479 aa16■□□□□ 0.15
CCDC88B-201ENST00000301897 LRRC3BQ96PB8 259 aa16■□□□□ 0.15
CCDC88B-201ENST00000301897 PNMA5Q96PV4 448 aa16■□□□□ 0.15
CCDC88B-201ENST00000301897 TMEM209Q96SK2 561 aa16■□□□□ 0.15
CCDC88B-201ENST00000301897 ZNF638Q14966 1978 aaKnown RBP15.99■□□□□ 0.15
CCDC88B-201ENST00000301897 SOBPA7XYQ1 873 aa15.99■□□□□ 0.15
CCDC88B-201ENST00000301897 FAM189A1O60320 539 aa15.99■□□□□ 0.15
CCDC88B-201ENST00000301897 AKAP3O75969 853 aa15.99■□□□□ 0.15
CCDC88B-201ENST00000301897 GUCY2FP51841 1108 aa15.99■□□□□ 0.15
CCDC88B-201ENST00000301897 SRSF5Q13243 272 aaKnown RBP15.99■□□□□ 0.15
CCDC88B-201ENST00000301897 AASDHQ4L235 1098 aaPredicted RBP15.99■□□□□ 0.15
CCDC88B-201ENST00000301897 TMEM119Q4V9L6 283 aa15.99■□□□□ 0.15
CCDC88B-201ENST00000301897 SLC39A12Q504Y0 691 aa15.99■□□□□ 0.15
CCDC88B-201ENST00000301897 JADE1Q6IE81 842 aa15.99■□□□□ 0.15
CCDC88B-201ENST00000301897 TTC9BQ8N6N2 239 aa15.99■□□□□ 0.15
CCDC88B-201ENST00000301897 C12orf50Q8NA57 414 aaPredicted RBP15.99■□□□□ 0.15
CCDC88B-201ENST00000301897 SPPL2BQ8TCT7 592 aa15.99■□□□□ 0.15
CCDC88B-201ENST00000301897 GAB3Q8WWW8 586 aa15.99■□□□□ 0.15
CCDC88B-201ENST00000301897 FAM212AQ96EL1 285 aa15.99■□□□□ 0.15
CCDC88B-201ENST00000301897 ZFYVE19Q96K21 471 aa15.99■□□□□ 0.15
CCDC88B-201ENST00000301897 SEPT5Q99719 369 aaPredicted RBP15.99■□□□□ 0.15
CCDC88B-201ENST00000301897 MSTO1Q9BUK6 570 aa15.99■□□□□ 0.15
CCDC88B-201ENST00000301897 ZCWPW1Q9H0M4 648 aa15.99■□□□□ 0.15
CCDC88B-201ENST00000301897 ASB7Q9H672 318 aa15.99■□□□□ 0.15
CCDC88B-201ENST00000301897 KIF9Q9HAQ2 790 aa15.99■□□□□ 0.15
CCDC88B-201ENST00000301897 PARVGQ9HBI0 331 aa15.99■□□□□ 0.15
CCDC88B-201ENST00000301897 C2CD2Q9Y426 696 aa15.99■□□□□ 0.15
CCDC88B-201ENST00000301897 KIF26AQ9ULI4 1882 aaPredicted RBP15.99■□□□□ 0.15
CCDC88B-201ENST00000301897 TSC2P49815 1807 aa15.98■□□□□ 0.15
CCDC88B-201ENST00000301897 ANO9A1A5B4 782 aa15.98■□□□□ 0.15
CCDC88B-201ENST00000301897 VWA3AA6NCI4 1184 aa15.98■□□□□ 0.15
CCDC88B-201ENST00000301897 K7ENM7 598 aa15.98■□□□□ 0.15
CCDC88B-201ENST00000301897 PIRO00625 290 aa15.98■□□□□ 0.15
CCDC88B-201ENST00000301897 RPP40O75818 363 aaKnown RBP15.98■□□□□ 0.15
CCDC88B-201ENST00000301897 SOAT2O75908 522 aa15.98■□□□□ 0.15
CCDC88B-201ENST00000301897 FAM13AO94988 1023 aa15.98■□□□□ 0.15
CCDC88B-201ENST00000301897 PRAMEF12O95522 483 aa15.98■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms