RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 FMO5P49326 533 aa6.71□□□□□ -1.34
VPS35-201ENST00000299138 ARL4CP56559 192 aa6.71□□□□□ -1.34
VPS35-201ENST00000299138 MYL6P60660 151 aa6.71□□□□□ -1.34
VPS35-201ENST00000299138 SFSWAPQ12872 951 aaKnown RBP6.71□□□□□ -1.34
VPS35-201ENST00000299138 AUHQ13825 339 aaKnown RBP6.71□□□□□ -1.34
VPS35-201ENST00000299138 CNGA3Q16281 694 aa6.71□□□□□ -1.34
VPS35-201ENST00000299138 KCTD21Q4G0X4 260 aa6.71□□□□□ -1.34
VPS35-201ENST00000299138 CCDC80Q76M96 950 aa6.71□□□□□ -1.34
VPS35-201ENST00000299138 BZW1Q7L1Q6 419 aaKnown RBP6.71□□□□□ -1.34
VPS35-201ENST00000299138 DYMQ7RTS9 669 aa6.71□□□□□ -1.34
VPS35-201ENST00000299138 TERB1Q8NA31 727 aa6.71□□□□□ -1.34
VPS35-201ENST00000299138 UXS1Q8NBZ7 420 aa6.71□□□□□ -1.34
VPS35-201ENST00000299138 MDM1Q8TC05 714 aa6.71□□□□□ -1.34
VPS35-201ENST00000299138 PNMA5Q96PV4 448 aa6.71□□□□□ -1.34
VPS35-201ENST00000299138 RIT2Q99578 217 aa6.71□□□□□ -1.34
VPS35-201ENST00000299138 RPH3AQ9Y2J0 694 aaPredicted RBP6.71□□□□□ -1.34
VPS35-201ENST00000299138 ZNF142P52746 1687 aaPredicted RBP6.71□□□□□ -1.34
VPS35-201ENST00000299138 ALAS1P13196 640 aa6.71□□□□□ -1.34
VPS35-201ENST00000299138 CRKLP46109 303 aaKnown RBP6.71□□□□□ -1.34
VPS35-201ENST00000299138 SERPINB9P50453 376 aa6.71□□□□□ -1.34
VPS35-201ENST00000299138 HK2P52789 917 aa6.71□□□□□ -1.34
VPS35-201ENST00000299138 MAEAQ7L5Y9 396 aa6.71□□□□□ -1.34
VPS35-201ENST00000299138 EPM2AIP1Q7L775 607 aaPredicted RBP6.71□□□□□ -1.34
VPS35-201ENST00000299138 CCNJLQ8IV13 435 aa6.71□□□□□ -1.34
VPS35-201ENST00000299138 CMTR1Q8N1G2 835 aaKnown RBP6.71□□□□□ -1.34
VPS35-201ENST00000299138 DHX33Q9H6R0 707 aaKnown RBP6.71□□□□□ -1.34
VPS35-201ENST00000299138 PKD2L1Q9P0L9 805 aa6.71□□□□□ -1.34
VPS35-201ENST00000299138 BCL9O00512 1426 aa6.7□□□□□ -1.34
VPS35-201ENST00000299138 ESYT3A0FGR9 886 aa6.7□□□□□ -1.34
VPS35-201ENST00000299138 RCCD1A6NED2 376 aa6.7□□□□□ -1.34
VPS35-201ENST00000299138 STMND1H3BQB6 276 aa6.7□□□□□ -1.34
VPS35-201ENST00000299138 NTSR2O95665 410 aa6.7□□□□□ -1.34
VPS35-201ENST00000299138 CALB1P05937 261 aa6.7□□□□□ -1.34
VPS35-201ENST00000299138 NSFP46459 744 aaKnown RBP6.7□□□□□ -1.34
VPS35-201ENST00000299138 MXI1P50539 228 aa6.7□□□□□ -1.34
VPS35-201ENST00000299138 SNAP25P60880 206 aa6.7□□□□□ -1.34
VPS35-201ENST00000299138 MORF4L2Q15014 288 aa6.7□□□□□ -1.34
VPS35-201ENST00000299138 BARGINQ6ZT62 677 aa6.7□□□□□ -1.34
VPS35-201ENST00000299138 UTS2BQ765I0 119 aa6.7□□□□□ -1.34
VPS35-201ENST00000299138 GSPT2Q8IYD1 628 aaKnown RBP6.7□□□□□ -1.34
VPS35-201ENST00000299138 PDIK1LQ8N165 341 aa6.7□□□□□ -1.34
VPS35-201ENST00000299138 ZNF483Q8TF39 744 aaPredicted RBP6.7□□□□□ -1.34
VPS35-201ENST00000299138 CDKL2Q92772 493 aa6.7□□□□□ -1.34
VPS35-201ENST00000299138 C18orf25Q96B23 403 aaPredicted RBP6.7□□□□□ -1.34
VPS35-201ENST00000299138 DNAJC19Q96DA6 116 aa6.7□□□□□ -1.34
VPS35-201ENST00000299138 L3MBTL3Q96JM7 780 aaPredicted RBP6.7□□□□□ -1.34
VPS35-201ENST00000299138 TEX12Q9BXU0 123 aa6.7□□□□□ -1.34
VPS35-201ENST00000299138 ZNF518BQ9C0D4 1074 aa6.7□□□□□ -1.34
VPS35-201ENST00000299138 INTS2Q9H0H0 1204 aaKnown RBP6.7□□□□□ -1.34
VPS35-201ENST00000299138 TLE6Q9H808 572 aa6.7□□□□□ -1.34
VPS35-201ENST00000299138 CHMP1AQ9HD42 196 aaPredicted RBP6.7□□□□□ -1.34
VPS35-201ENST00000299138 KIAA1024Q9UPX6 916 aa6.7□□□□□ -1.34
VPS35-201ENST00000299138 SNX24Q9Y343 169 aa6.7□□□□□ -1.34
VPS35-201ENST00000299138 GPR75-ASB3A0A0A6YYF3 556 aa6.7□□□□□ -1.34
VPS35-201ENST00000299138 EXOC1LA0A1B0GW35 172 aa6.7□□□□□ -1.34
VPS35-201ENST00000299138 ARHGEF35A5YM69 484 aa6.7□□□□□ -1.34
VPS35-201ENST00000299138 RNF225M0QZC1 329 aaPredicted RBP6.7□□□□□ -1.34
VPS35-201ENST00000299138 M0R3G1 203 aa6.7□□□□□ -1.34
VPS35-201ENST00000299138 NCK2O43639 380 aa6.7□□□□□ -1.34
VPS35-201ENST00000299138 RGS20O76081 388 aa6.7□□□□□ -1.34
VPS35-201ENST00000299138 RGS2P41220 211 aa6.7□□□□□ -1.34
VPS35-201ENST00000299138 ARF3P61204 181 aaPredicted RBP6.7□□□□□ -1.34
VPS35-201ENST00000299138 ARF1P84077 181 aaKnown RBP6.7□□□□□ -1.34
VPS35-201ENST00000299138 POU5F1Q01860 360 aaKnown RBP6.7□□□□□ -1.34
VPS35-201ENST00000299138 PPATQ06203 517 aa6.7□□□□□ -1.34
VPS35-201ENST00000299138 KCNMA1Q12791 1236 aa6.7□□□□□ -1.34
VPS35-201ENST00000299138 MIGA2Q7L4E1 593 aa6.7□□□□□ -1.34
VPS35-201ENST00000299138 BNIPLQ7Z465 357 aa6.7□□□□□ -1.34
VPS35-201ENST00000299138 IRF2BP2Q7Z5L9 587 aa6.7□□□□□ -1.34
VPS35-201ENST00000299138 LRRC49Q8IUZ0 686 aa6.7□□□□□ -1.34
VPS35-201ENST00000299138 HDAC7Q8WUI4 952 aa6.7□□□□□ -1.34
VPS35-201ENST00000299138 TBATAQ96M53 351 aa6.7□□□□□ -1.34
VPS35-201ENST00000299138 PRPF18Q99633 342 aaKnown RBP6.7□□□□□ -1.34
VPS35-201ENST00000299138 CD248Q9HCU0 757 aa6.7□□□□□ -1.34
VPS35-201ENST00000299138 GINM1Q9NU53 330 aa6.7□□□□□ -1.34
VPS35-201ENST00000299138 NENFQ9UMX5 172 aa6.7□□□□□ -1.34
VPS35-201ENST00000299138 WBP11Q9Y2W2 641 aaKnown RBP6.7□□□□□ -1.34
VPS35-201ENST00000299138 PCDHA3Q9Y5H8 950 aa6.7□□□□□ -1.34
VPS35-201ENST00000299138 ALG6Q9Y672 507 aa6.7□□□□□ -1.34
VPS35-201ENST00000299138 PHF20L1A8MW92 1017 aa6.7□□□□□ -1.34
VPS35-201ENST00000299138 BBOX1O75936 387 aa6.7□□□□□ -1.34
VPS35-201ENST00000299138 KRT38O76015 456 aa6.7□□□□□ -1.34
VPS35-201ENST00000299138 TJP3O95049 919 aa6.7□□□□□ -1.34
VPS35-201ENST00000299138 PENKP01210 267 aaPredicted RBP6.7□□□□□ -1.34
VPS35-201ENST00000299138 CNTFP26441 200 aa6.7□□□□□ -1.34
VPS35-201ENST00000299138 NAB1Q13506 487 aa6.7□□□□□ -1.34
VPS35-201ENST00000299138 TNFAIP8L3Q5GJ75 292 aa6.7□□□□□ -1.34
VPS35-201ENST00000299138 KHDRBS2Q5VWX1 349 aaKnown RBP6.7□□□□□ -1.34
VPS35-201ENST00000299138 XXYLT1Q8NBI6 393 aa6.7□□□□□ -1.34
VPS35-201ENST00000299138 FAXDC2Q96IV6 333 aa6.7□□□□□ -1.34
VPS35-201ENST00000299138 FAM84BQ96KN1 310 aaPredicted RBP6.7□□□□□ -1.34
VPS35-201ENST00000299138 OLFM1Q99784 485 aa6.7□□□□□ -1.34
VPS35-201ENST00000299138 BEGAINQ9BUH8 593 aa6.7□□□□□ -1.34
VPS35-201ENST00000299138 MRIQ9BWK5 157 aa6.7□□□□□ -1.34
VPS35-201ENST00000299138 OSBPL8Q9BZF1 889 aa6.7□□□□□ -1.34
VPS35-201ENST00000299138 SPRTNQ9H040 489 aaPredicted RBP6.7□□□□□ -1.34
VPS35-201ENST00000299138 NOL6Q9H6R4 1146 aaKnown RBP6.7□□□□□ -1.34
VPS35-201ENST00000299138 PLK2Q9NYY3 685 aa6.7□□□□□ -1.34
VPS35-201ENST00000299138 MAD2L2Q9UI95 211 aa6.7□□□□□ -1.34
VPS35-201ENST00000299138 ZNF148Q9UQR1 794 aa6.7□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms