RNA–Protein interactions for RNA: ENST00000297979.9

C9orf3-202, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best) BASIC

Gene C9orf3, Length 2,820 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-202ENST00000297979 C2CD6Q53TS8 623 aa15.16■□□□□ 0.02
C9orf3-202ENST00000297979 DCAF12L1Q5VU92 463 aa15.16■□□□□ 0.02
C9orf3-202ENST00000297979 HNRNPLLQ8WVV9 542 aaKnown RBP15.16■□□□□ 0.02
C9orf3-202ENST00000297979 LRRC1Q9BTT6 524 aa15.16■□□□□ 0.02
C9orf3-202ENST00000297979 TUBGCP4Q9UGJ1 667 aa15.16■□□□□ 0.02
C9orf3-202ENST00000297979 TMEM59LQ9UK28 342 aa15.16■□□□□ 0.02
C9orf3-202ENST00000297979 TTC7AQ9ULT0 858 aaPredicted RBP15.16■□□□□ 0.02
C9orf3-202ENST00000297979 SPOPO43791 374 aa15.15■□□□□ 0.02
C9orf3-202ENST00000297979 CD19P15391 556 aa15.15■□□□□ 0.02
C9orf3-202ENST00000297979 MMP8P22894 467 aa15.15■□□□□ 0.02
C9orf3-202ENST00000297979 CCSAPQ6IQ19 270 aaPredicted RBP15.15■□□□□ 0.02
C9orf3-202ENST00000297979 C8orf74Q6P047 294 aa15.15■□□□□ 0.02
C9orf3-202ENST00000297979 C1orf131Q8NDD1 294 aaKnown RBP15.15■□□□□ 0.02
C9orf3-202ENST00000297979 WHAMMQ8TF30 809 aa15.15■□□□□ 0.02
C9orf3-202ENST00000297979 TSPAN18Q96SJ8 248 aa15.15■□□□□ 0.02
C9orf3-202ENST00000297979 MRPL47Q9HD33 250 aaKnown RBP15.15■□□□□ 0.02
C9orf3-202ENST00000297979 UBQLN1Q9UMX0 589 aaKnown RBP15.15■□□□□ 0.02
C9orf3-202ENST00000297979 SCINQ9Y6U3 715 aa15.15■□□□□ 0.02
C9orf3-202ENST00000297979 SEC31AO94979 1220 aaKnown RBP15.15■□□□□ 0.02
C9orf3-202ENST00000297979 ZRANB2O95218 330 aaKnown RBP eCLIP15.15■□□□□ 0.02
C9orf3-202ENST00000297979 CDH5P33151 784 aaPredicted RBP15.15■□□□□ 0.02
C9orf3-202ENST00000297979 GLE1Q53GS7 698 aaKnown RBP15.15■□□□□ 0.02
C9orf3-202ENST00000297979 GLRA4Q5JXX5 417 aa15.15■□□□□ 0.02
C9orf3-202ENST00000297979 MAP3K21Q5TCX8 1036 aa15.15■□□□□ 0.02
C9orf3-202ENST00000297979 PHLDB2Q86SQ0 1253 aa15.15■□□□□ 0.02
C9orf3-202ENST00000297979 TTC39CQ8N584 583 aa15.15■□□□□ 0.02
C9orf3-202ENST00000297979 PCSK9Q8NBP7 692 aaKnown RBP15.15■□□□□ 0.02
C9orf3-202ENST00000297979 RUBCNQ92622 972 aa15.15■□□□□ 0.02
C9orf3-202ENST00000297979 ALG3Q92685 438 aa15.15■□□□□ 0.02
C9orf3-202ENST00000297979 CD101Q93033 1021 aa15.15■□□□□ 0.02
C9orf3-202ENST00000297979 WNT8BQ93098 351 aa15.15■□□□□ 0.02
C9orf3-202ENST00000297979 PARP2Q9UGN5 583 aa15.15■□□□□ 0.02
C9orf3-202ENST00000297979 IPPQ9Y573 584 aa15.15■□□□□ 0.02
C9orf3-202ENST00000297979 TLR3O15455 904 aaKnown RBP15.14■□□□□ 0.01
C9orf3-202ENST00000297979 INCA1Q0VD86 236 aa15.14■□□□□ 0.01
C9orf3-202ENST00000297979 MTA1Q13330 715 aa15.14■□□□□ 0.01
C9orf3-202ENST00000297979 TWF2Q6IBS0 349 aaKnown RBP15.14■□□□□ 0.01
C9orf3-202ENST00000297979 PLEKHA7Q6IQ23 1121 aa15.14■□□□□ 0.01
C9orf3-202ENST00000297979 LLGL2Q6P1M3 1020 aa15.14■□□□□ 0.01
C9orf3-202ENST00000297979 RPAINQ86UA6 219 aa15.14■□□□□ 0.01
C9orf3-202ENST00000297979 SLC4A11Q8NBS3 891 aa15.14■□□□□ 0.01
C9orf3-202ENST00000297979 KRT35Q92764 455 aa15.14■□□□□ 0.01
C9orf3-202ENST00000297979 C18orf25Q96B23 403 aaPredicted RBP15.14■□□□□ 0.01
C9orf3-202ENST00000297979 TMEM176AQ96HP8 235 aa15.14■□□□□ 0.01
C9orf3-202ENST00000297979 TWNKQ96RR1 684 aa15.14■□□□□ 0.01
C9orf3-202ENST00000297979 ELOVL4Q9GZR5 314 aa15.14■□□□□ 0.01
C9orf3-202ENST00000297979 HMGXB4Q9UGU5 601 aa15.14■□□□□ 0.01
C9orf3-202ENST00000297979 DDX20Q9UHI6 824 aaKnown RBP15.14■□□□□ 0.01
C9orf3-202ENST00000297979 CALB1P05937 261 aa15.14■□□□□ 0.01
C9orf3-202ENST00000297979 CTNNA2P26232 953 aa15.14■□□□□ 0.01
C9orf3-202ENST00000297979 CTNNA1P35221 906 aaKnown RBP15.14■□□□□ 0.01
C9orf3-202ENST00000297979 PTPN11Q06124 597 aaPredicted RBP15.14■□□□□ 0.01
C9orf3-202ENST00000297979 LRRC52Q8N7C0 313 aa15.14■□□□□ 0.01
C9orf3-202ENST00000297979 RAET1EQ8TD07 263 aa15.14■□□□□ 0.01
C9orf3-202ENST00000297979 RNPC3Q96LT9 517 aaKnown RBP15.14■□□□□ 0.01
C9orf3-202ENST00000297979 SENP6Q9GZR1 1112 aaPredicted RBP15.14■□□□□ 0.01
C9orf3-202ENST00000297979 BARX2Q9UMQ3 279 aaPredicted RBP15.14■□□□□ 0.01
C9orf3-202ENST00000297979 CCDC66A2RUB6 948 aa15.13■□□□□ 0.01
C9orf3-202ENST00000297979 XPOTO43592 962 aaKnown RBP15.13■□□□□ 0.01
C9orf3-202ENST00000297979 RPS6KA5O75582 802 aa15.13■□□□□ 0.01
C9orf3-202ENST00000297979 CTSHP09668 335 aa15.13■□□□□ 0.01
C9orf3-202ENST00000297979 KCNE1P15382 129 aa15.13■□□□□ 0.01
C9orf3-202ENST00000297979 CAPN2P17655 700 aa15.13■□□□□ 0.01
C9orf3-202ENST00000297979 ORC1Q13415 861 aa15.13■□□□□ 0.01
C9orf3-202ENST00000297979 MAMLD1Q13495 774 aa15.13■□□□□ 0.01
C9orf3-202ENST00000297979 XKR4Q5GH76 650 aa15.13■□□□□ 0.01
C9orf3-202ENST00000297979 SMG8Q8ND04 991 aaKnown RBP15.13■□□□□ 0.01
C9orf3-202ENST00000297979 LHX5Q9H2C1 402 aa15.13■□□□□ 0.01
C9orf3-202ENST00000297979 RNF39Q9H2S5 420 aa15.13■□□□□ 0.01
C9orf3-202ENST00000297979 KLK14Q9P0G3 267 aa15.13■□□□□ 0.01
C9orf3-202ENST00000297979 SMIM28A0A1B0GU29 152 aa15.13■□□□□ 0.01
C9orf3-202ENST00000297979 GOLGA6CA6NDK9 693 aa15.13■□□□□ 0.01
C9orf3-202ENST00000297979 GOLGA6BA6NDN3 693 aa15.13■□□□□ 0.01
C9orf3-202ENST00000297979 MYO1FO00160 1098 aa15.13■□□□□ 0.01
C9orf3-202ENST00000297979 GOLGA6DP0CG33 693 aa15.13■□□□□ 0.01
C9orf3-202ENST00000297979 MAP2K2P36507 400 aa15.13■□□□□ 0.01
C9orf3-202ENST00000297979 MARCKSL1P49006 195 aa15.13■□□□□ 0.01
C9orf3-202ENST00000297979 CLUL1Q15846 466 aa15.13■□□□□ 0.01
C9orf3-202ENST00000297979 DENND1BQ6P3S1 775 aa15.13■□□□□ 0.01
C9orf3-202ENST00000297979 KRT12Q99456 494 aa15.13■□□□□ 0.01
C9orf3-202ENST00000297979 NAP1L3Q99457 506 aaPredicted RBP15.13■□□□□ 0.01
C9orf3-202ENST00000297979 TRIM7Q9C029 511 aa15.13■□□□□ 0.01
C9orf3-202ENST00000297979 PARVAQ9NVD7 372 aa15.13■□□□□ 0.01
C9orf3-202ENST00000297979 GOLGA6AQ9NYA3 693 aa15.13■□□□□ 0.01
C9orf3-202ENST00000297979 CCDC188H7C350 402 aa15.12■□□□□ 0.01
C9orf3-202ENST00000297979 KRIT1O00522 736 aa15.12■□□□□ 0.01
C9orf3-202ENST00000297979 PPEF2O14830 753 aa15.12■□□□□ 0.01
C9orf3-202ENST00000297979 GNRH1P01148 92 aa15.12■□□□□ 0.01
C9orf3-202ENST00000297979 CD4P01730 458 aa15.12■□□□□ 0.01
C9orf3-202ENST00000297979 FGGP02679 453 aa15.12■□□□□ 0.01
C9orf3-202ENST00000297979 CHRNA1P02708 482 aa15.12■□□□□ 0.01
C9orf3-202ENST00000297979 ATF7P17544 494 aaPredicted RBP15.12■□□□□ 0.01
C9orf3-202ENST00000297979 SLC1A1P43005 524 aa15.12■□□□□ 0.01
C9orf3-202ENST00000297979 PEX5P50542 639 aa15.12■□□□□ 0.01
C9orf3-202ENST00000297979 MGAT3Q09327 533 aa15.12■□□□□ 0.01
C9orf3-202ENST00000297979 ZNF211Q13398 564 aaPredicted RBP15.12■□□□□ 0.01
C9orf3-202ENST00000297979 ZKSCAN8Q15776 578 aaPredicted RBP15.12■□□□□ 0.01
C9orf3-202ENST00000297979 LONRF2Q1L5Z9 754 aa15.12■□□□□ 0.01
C9orf3-202ENST00000297979 C9orf57Q5W0N0 161 aa15.12■□□□□ 0.01
C9orf3-202ENST00000297979 RNF180Q86T96 592 aa15.12■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms