RNA–Protein interactions for RNA: ENST00000297405.9

CSMD3-201, Transcript of CUB and Sushi multiple domains 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSMD3, Length 13,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-201ENST00000297405 NFIAQ12857 509 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 RHBDF1Q96CC6 855 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 ERP27Q96DN0 273 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 SH3GLB2Q9NR46 395 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 KLHL1Q9NR64 748 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 DNAJB4Q9UDY4 337 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 ACTL7BQ9Y614 415 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 YLPM1P49750 1951 aaKnown RBP5.04□□□□□ -1.6
CSMD3-201ENST00000297405 ZNF879B4DU55 563 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 CFLARO15519 480 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 SNRPA1P09661 255 aaKnown RBP5.04□□□□□ -1.6
CSMD3-201ENST00000297405 POLGP54098 1239 aaPredicted RBP5.04□□□□□ -1.6
CSMD3-201ENST00000297405 MTA1Q13330 715 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 KYAT1Q16773 422 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 TCEAL5Q5H9L2 206 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 DNAJC24Q6P3W2 148 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 MAPKAPK5Q8IW41 473 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 CYP4Z2PQ8N1L4 340 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 NUAK2Q9H093 628 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 TMEM168Q9H0V1 697 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 NEK6Q9HC98 313 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 SEC31BQ9NQW1 1179 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 FADS3Q9Y5Q0 445 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 ADCY9O60503 1353 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 TRPM1Q7Z4N2 1603 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 MAGEB6P1A0A0J9YX57 407 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 ZNF806P0C7X5 589 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 CLUP10909 449 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 CPA1P15085 419 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 MYL12AP19105 171 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 TNFRSF8P28908 595 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 ADCY7P51828 1080 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 CDH4P55283 916 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 CHRNB3Q05901 458 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 FAM47CQ5HY64 1035 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 C16orf62Q7Z3J2 963 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 CCSER2Q9H7U1 834 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 FAM86C1Q9NVL1 165 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 WDR70Q9NW82 654 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 THRAP3Q9Y2W1 955 aaKnown RBP5.04□□□□□ -1.6
CSMD3-201ENST00000297405 TRIM49BA6NDI0 452 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 TRIM49D1C9J1S8 452 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 HAT1O14929 419 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 NTRK1P04629 796 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 MMP14P50281 582 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 SSTP61278 116 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 DIS3L2Q8IYB7 885 aaKnown RBP5.04□□□□□ -1.6
CSMD3-201ENST00000297405 BFARQ9NZS9 450 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 PA2G4Q9UQ80 394 aaKnown RBP5.04□□□□□ -1.6
CSMD3-201ENST00000297405 TRPM2O94759 1503 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 TDRD9Q8NDG6 1382 aaKnown RBP5.04□□□□□ -1.6
CSMD3-201ENST00000297405 ZNFX1Q9P2E3 1918 aaKnown RBP5.04□□□□□ -1.6
CSMD3-201ENST00000297405 PAX7P23759 505 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 FASP25445 335 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 PGDP52209 483 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 PSMD4P55036 377 aaKnown RBP5.04□□□□□ -1.6
CSMD3-201ENST00000297405 MARSP56192 900 aaKnown RBP5.04□□□□□ -1.6
CSMD3-201ENST00000297405 SNRPFP62306 86 aaKnown RBP5.04□□□□□ -1.6
CSMD3-201ENST00000297405 KCNB1Q14721 858 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 RAB42Q8N4Z0 105 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 MYCT1Q8N699 235 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 ACMSDQ8TDX5 336 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 STK32AQ8WU08 396 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 RAPGEF5Q92565 580 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 CCDC8Q9H0W5 538 aaPredicted RBP5.04□□□□□ -1.6
CSMD3-201ENST00000297405 GALNT8Q9NY28 637 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 POLKQ9UBT6 870 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 DAPK2Q9UIK4 370 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 MCM8Q9UJA3 840 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 MTMR6Q9Y217 621 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 H7C0C1 242 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 H7C2Y5 167 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 OATP04181 439 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 OR52Z1P0C646 297 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 ATP5OP48047 213 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 CHN2P52757 468 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 TRAF3Q13114 568 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 ADAM9Q13443 819 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 FAM189A2Q15884 450 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 PACS1Q6VY07 963 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 NUP93Q8N1F7 819 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 FAM227BQ96M60 508 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 ISCUQ9H1K1 167 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 RAD54BQ9Y620 910 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 USF3Q68DE3 2245 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 DNAJA2O60884 412 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 STOMP27105 288 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 RRM2P31350 389 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 IMPG1Q17R60 797 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 KIAA1841Q6NSI8 718 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 STK32CQ86UX6 486 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 STAG2Q8N3U4 1231 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 MMGT1Q8N4V1 131 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 POC5Q8NA72 575 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 RFFLQ8WZ73 363 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 FAM118BQ9BPY3 351 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 NUDT12Q9BQG2 462 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 PCSK1NQ9UHG2 260 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 GTF3C4Q9UKN8 822 aa5.04□□□□□ -1.6
CSMD3-201ENST00000297405 PRPSAP2O60256 369 aa5.03□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms