RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 CHRDQ9H2X0 955 aa13.8□□□□□ -0.2
CD44-203ENST00000278386 MRPL44Q9H9J2 332 aaKnown RBP13.8□□□□□ -0.2
CD44-203ENST00000278386 PRMT8Q9NR22 394 aaPredicted RBP13.8□□□□□ -0.2
CD44-203ENST00000278386 ZSCAN32Q9NX65 697 aa13.8□□□□□ -0.2
CD44-203ENST00000278386 DPP3Q9NY33 737 aa13.8□□□□□ -0.2
CD44-203ENST00000278386 TBC1D7Q9P0N9 293 aa13.8□□□□□ -0.2
CD44-203ENST00000278386 SMG5Q9UPR3 1016 aaKnown RBP13.8□□□□□ -0.2
CD44-203ENST00000278386 C2CD2Q9Y426 696 aa13.8□□□□□ -0.2
CD44-203ENST00000278386 ASB3Q9Y575 518 aa13.8□□□□□ -0.2
CD44-203ENST00000278386 DMXL1Q9Y485 3027 aa13.8□□□□□ -0.2
CD44-203ENST00000278386 ANO9A1A5B4 782 aa13.79□□□□□ -0.2
CD44-203ENST00000278386 SHISA7A6NL88 538 aa13.79□□□□□ -0.2
CD44-203ENST00000278386 SLC38A8A6NNN8 435 aa13.79□□□□□ -0.2
CD44-203ENST00000278386 PIRO00625 290 aa13.79□□□□□ -0.2
CD44-203ENST00000278386 CYB561D2O14569 222 aa13.79□□□□□ -0.2
CD44-203ENST00000278386 GCNT3O95395 438 aa13.79□□□□□ -0.2
CD44-203ENST00000278386 FGF19O95750 216 aa13.79□□□□□ -0.2
CD44-203ENST00000278386 CYP11A1P05108 521 aa13.79□□□□□ -0.2
CD44-203ENST00000278386 CYP4F8P98187 520 aa13.79□□□□□ -0.2
CD44-203ENST00000278386 PPP2R5DQ14738 602 aa13.79□□□□□ -0.2
CD44-203ENST00000278386 TAF12Q16514 161 aa13.79□□□□□ -0.2
CD44-203ENST00000278386 SV2CQ496J9 727 aa13.79□□□□□ -0.2
CD44-203ENST00000278386 GPR158Q5T848 1215 aa13.79□□□□□ -0.2
CD44-203ENST00000278386 RRAGBQ5VZM2 374 aa13.79□□□□□ -0.2
CD44-203ENST00000278386 DNAJB7Q7Z6W7 309 aaPredicted RBP13.79□□□□□ -0.2
CD44-203ENST00000278386 GPIHBP1Q8IV16 184 aa13.79□□□□□ -0.2
CD44-203ENST00000278386 EFCAB13Q8IY85 973 aa13.79□□□□□ -0.2
CD44-203ENST00000278386 THEM5Q8N1Q8 247 aa13.79□□□□□ -0.2
CD44-203ENST00000278386 SUMF1Q8NBK3 374 aa13.79□□□□□ -0.2
CD44-203ENST00000278386 NOC3LQ8WTT2 800 aaKnown RBP13.79□□□□□ -0.2
CD44-203ENST00000278386 SECISBP2LQ93073 1101 aaKnown RBP13.79□□□□□ -0.2
CD44-203ENST00000278386 RMDN1Q96DB5 314 aa13.79□□□□□ -0.2
CD44-203ENST00000278386 RSPRY1Q96DX4 576 aa13.79□□□□□ -0.2
CD44-203ENST00000278386 IER2Q9BTL4 223 aa13.79□□□□□ -0.2
CD44-203ENST00000278386 LRRC3Q9BY71 257 aa13.79□□□□□ -0.2
CD44-203ENST00000278386 IKZF4Q9H2S9 585 aa13.79□□□□□ -0.2
CD44-203ENST00000278386 ST6GALNAC4Q9H4F1 302 aa13.79□□□□□ -0.2
CD44-203ENST00000278386 TRPV5Q9NQA5 729 aa13.79□□□□□ -0.2
CD44-203ENST00000278386 ABI2Q9NYB9 513 aaPredicted RBP13.79□□□□□ -0.2
CD44-203ENST00000278386 SEL1LQ9UBV2 794 aa13.79□□□□□ -0.2
CD44-203ENST00000278386 EXOC7Q9UPT5 735 aa13.79□□□□□ -0.2
CD44-203ENST00000278386 RALGAPA1Q6GYQ0 2036 aa13.79□□□□□ -0.2
CD44-203ENST00000278386 ZNF292O60281 2723 aa13.79□□□□□ -0.2
CD44-203ENST00000278386 FRYLO94915 3013 aa13.79□□□□□ -0.2
CD44-203ENST00000278386 IL18RAPO95256 599 aa13.78□□□□□ -0.2
CD44-203ENST00000278386 IDEP14735 1019 aa13.78□□□□□ -0.2
CD44-203ENST00000278386 GAP43P17677 238 aa13.78□□□□□ -0.2
CD44-203ENST00000278386 CCNE1P24864 410 aa13.78□□□□□ -0.2
CD44-203ENST00000278386 CDC25CP30307 473 aa13.78□□□□□ -0.2
CD44-203ENST00000278386 STAT6P42226 847 aa13.78□□□□□ -0.2
CD44-203ENST00000278386 SOX9P48436 509 aa13.78□□□□□ -0.2
CD44-203ENST00000278386 TUFMP49411 452 aaKnown RBP13.78□□□□□ -0.2
CD44-203ENST00000278386 CCR3P51677 355 aa13.78□□□□□ -0.2
CD44-203ENST00000278386 RESTQ13127 1097 aa13.78□□□□□ -0.2
CD44-203ENST00000278386 FZD5Q13467 585 aa13.78□□□□□ -0.2
CD44-203ENST00000278386 CUL4AQ13619 759 aa13.78□□□□□ -0.2
CD44-203ENST00000278386 LRRC32Q14392 662 aa13.78□□□□□ -0.2
CD44-203ENST00000278386 POSTNQ15063 836 aa13.78□□□□□ -0.2
CD44-203ENST00000278386 PTPAQ15257 358 aa13.78□□□□□ -0.2
CD44-203ENST00000278386 GAREM2Q75VX8 874 aa13.78□□□□□ -0.2
CD44-203ENST00000278386 SV2BQ7L1I2 683 aa13.78□□□□□ -0.2
CD44-203ENST00000278386 ZNF720Q7Z2F6 126 aa13.78□□□□□ -0.2
CD44-203ENST00000278386 ARID3BQ8IVW6 561 aaPredicted RBP13.78□□□□□ -0.2
CD44-203ENST00000278386 ZBTB44Q8NCP5 570 aa13.78□□□□□ -0.2
CD44-203ENST00000278386 SAAL1Q96ER3 474 aa13.78□□□□□ -0.2
CD44-203ENST00000278386 BORCS6Q96GS4 357 aa13.78□□□□□ -0.2
CD44-203ENST00000278386 MSANTD3Q96H12 275 aa13.78□□□□□ -0.2
CD44-203ENST00000278386 CLIC6Q96NY7 704 aa13.78□□□□□ -0.2
CD44-203ENST00000278386 ZCWPW1Q9H0M4 648 aa13.78□□□□□ -0.2
CD44-203ENST00000278386 LMAN1LQ9HAT1 526 aa13.78□□□□□ -0.2
CD44-203ENST00000278386 HSFX1Q9UBD0 423 aa13.78□□□□□ -0.2
CD44-203ENST00000278386 FBXO2Q9UK22 296 aaPredicted RBP13.78□□□□□ -0.2
CD44-203ENST00000278386 STYXL1Q9Y6J8 313 aa13.78□□□□□ -0.2
CD44-203ENST00000278386 MYMKA6NI61 221 aa13.77□□□□□ -0.21
CD44-203ENST00000278386 ARNTLO00327 626 aa13.77□□□□□ -0.21
CD44-203ENST00000278386 CHADO15335 359 aa13.77□□□□□ -0.21
CD44-203ENST00000278386 ATF6P18850 670 aa13.77□□□□□ -0.21
CD44-203ENST00000278386 HELZP42694 1942 aaKnown RBP13.77□□□□□ -0.21
CD44-203ENST00000278386 TFAMQ00059 246 aaKnown RBP13.77□□□□□ -0.21
CD44-203ENST00000278386 FCHO2Q0JRZ9 810 aa13.77□□□□□ -0.21
CD44-203ENST00000278386 L1TD1Q5T7N2 865 aaKnown RBP13.77□□□□□ -0.21
CD44-203ENST00000278386 WSCD1Q658N2 575 aa13.77□□□□□ -0.21
CD44-203ENST00000278386 FAM173BQ6P4H8 233 aa13.77□□□□□ -0.21
CD44-203ENST00000278386 SYCP3Q8IZU3 236 aa13.77□□□□□ -0.21
CD44-203ENST00000278386 TTC8Q8TAM2 541 aa13.77□□□□□ -0.21
CD44-203ENST00000278386 SPPL2BQ8TCT7 592 aa13.77□□□□□ -0.21
CD44-203ENST00000278386 GIPC2Q8TF65 315 aa13.77□□□□□ -0.21
CD44-203ENST00000278386 C2orf15Q8WU43 125 aaKnown RBP13.77□□□□□ -0.21
CD44-203ENST00000278386 ZFYVE19Q96K21 471 aa13.77□□□□□ -0.21
CD44-203ENST00000278386 ACCSQ96QU6 501 aa13.77□□□□□ -0.21
CD44-203ENST00000278386 FAM213AQ9BRX8 229 aa13.77□□□□□ -0.21
CD44-203ENST00000278386 EPC1Q9H2F5 836 aa13.77□□□□□ -0.21
CD44-203ENST00000278386 C8orf33Q9H7E9 229 aaPredicted RBP13.77□□□□□ -0.21
CD44-203ENST00000278386 GMEB2Q9UKD1 530 aa13.77□□□□□ -0.21
CD44-203ENST00000278386 RAB23Q9ULC3 237 aa13.77□□□□□ -0.21
CD44-203ENST00000278386 SRPRBQ9Y5M8 271 aaKnown RBP13.77□□□□□ -0.21
CD44-203ENST00000278386 DNAH14Q0VDD8 3507 aa13.77□□□□□ -0.21
CD44-203ENST00000278386 WDR87Q6ZQQ6 2873 aa13.76□□□□□ -0.21
CD44-203ENST00000278386 KPNA7A9QM74 516 aa13.76□□□□□ -0.21
CD44-203ENST00000278386 PPP1R37O75864 691 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms