RNA–Protein interactions for RNA: ENST00000264883.7

NUP54-201, Transcript of nucleoporin 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NUP54, Length 2,367 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-201ENST00000264883 STRIP1Q5VSL9 837 aa13.83□□□□□ -0.19
NUP54-201ENST00000264883 CCDC62Q6P9F0 684 aa13.83□□□□□ -0.19
NUP54-201ENST00000264883 SYDE1Q6ZW31 735 aaPredicted RBP13.83□□□□□ -0.19
NUP54-201ENST00000264883 RFWD2Q8NHY2 731 aa13.83□□□□□ -0.19
NUP54-201ENST00000264883 DGCR14Q96DF8 476 aaKnown RBP13.83□□□□□ -0.19
NUP54-201ENST00000264883 EPB41L1Q9H4G0 881 aa13.83□□□□□ -0.19
NUP54-201ENST00000264883 PCDH18Q9HCL0 1135 aa13.83□□□□□ -0.19
NUP54-201ENST00000264883 KANSL3Q9P2N6 904 aa13.83□□□□□ -0.19
NUP54-201ENST00000264883 BTBD19C9JJ37 291 aa13.83□□□□□ -0.2
NUP54-201ENST00000264883 DLATP10515 647 aaKnown RBP13.83□□□□□ -0.2
NUP54-201ENST00000264883 MAN1A1P33908 653 aa13.83□□□□□ -0.2
NUP54-201ENST00000264883 SLC16A2P36021 539 aa13.83□□□□□ -0.2
NUP54-201ENST00000264883 RAP1GDS1P52306 607 aa13.83□□□□□ -0.2
NUP54-201ENST00000264883 MESDQ14696 234 aa13.83□□□□□ -0.2
NUP54-201ENST00000264883 RINT1Q6NUQ1 792 aa13.83□□□□□ -0.2
NUP54-201ENST00000264883 SMYD1Q8NB12 490 aa13.83□□□□□ -0.2
NUP54-201ENST00000264883 C1orf54Q8WWF1 131 aa13.83□□□□□ -0.2
NUP54-201ENST00000264883 MKL1Q969V6 931 aa13.83□□□□□ -0.2
NUP54-201ENST00000264883 LENG9Q96B70 501 aa13.83□□□□□ -0.2
NUP54-201ENST00000264883 C9orf72Q96LT7 481 aa13.83□□□□□ -0.2
NUP54-201ENST00000264883 TTC1Q99614 292 aa13.83□□□□□ -0.2
NUP54-201ENST00000264883 AMNQ9BXJ7 453 aa13.83□□□□□ -0.2
NUP54-201ENST00000264883 PARVGQ9HBI0 331 aa13.83□□□□□ -0.2
NUP54-201ENST00000264883 VAV3Q9UKW4 847 aa13.83□□□□□ -0.2
NUP54-201ENST00000264883 PSME4Q14997 1843 aa13.83□□□□□ -0.2
NUP54-201ENST00000264883 A0A0G2JND7 137 aa13.82□□□□□ -0.2
NUP54-201ENST00000264883 G3V3G9 751 aa13.82□□□□□ -0.2
NUP54-201ENST00000264883 MEIS1O00470 390 aa13.82□□□□□ -0.2
NUP54-201ENST00000264883 CYP3A4P08684 503 aa13.82□□□□□ -0.2
NUP54-201ENST00000264883 SHMT1P34896 483 aa13.82□□□□□ -0.2
NUP54-201ENST00000264883 ZBTB16Q05516 673 aa13.82□□□□□ -0.2
NUP54-201ENST00000264883 MED21Q13503 144 aa13.82□□□□□ -0.2
NUP54-201ENST00000264883 CYLC2Q14093 348 aaPredicted RBP13.82□□□□□ -0.2
NUP54-201ENST00000264883 HNRNPDQ14103 355 aaKnown RBP13.82□□□□□ -0.2
NUP54-201ENST00000264883 TRIP13Q15645 432 aaPredicted RBP13.82□□□□□ -0.2
NUP54-201ENST00000264883 AOC3Q16853 763 aa13.82□□□□□ -0.2
NUP54-201ENST00000264883 DCAF8Q5TAQ9 597 aa13.82□□□□□ -0.2
NUP54-201ENST00000264883 HHIPL2Q6UWX4 724 aa13.82□□□□□ -0.2
NUP54-201ENST00000264883 B3GNT6Q6ZMB0 384 aa13.82□□□□□ -0.2
NUP54-201ENST00000264883 KCTD1Q719H9 257 aa13.82□□□□□ -0.2
NUP54-201ENST00000264883 PALB2Q86YC2 1186 aa13.82□□□□□ -0.2
NUP54-201ENST00000264883 C4orf33Q8N1A6 199 aa13.82□□□□□ -0.2
NUP54-201ENST00000264883 LRRC43Q8N309 656 aa13.82□□□□□ -0.2
NUP54-201ENST00000264883 TMEM174Q8WUU8 243 aa13.82□□□□□ -0.2
NUP54-201ENST00000264883 SLC35B4Q969S0 331 aa13.82□□□□□ -0.2
NUP54-201ENST00000264883 TTC25Q96NG3 672 aa13.82□□□□□ -0.2
NUP54-201ENST00000264883 CYTH2Q99418 400 aa13.82□□□□□ -0.2
NUP54-201ENST00000264883 RUSC1Q9BVN2 902 aa13.82□□□□□ -0.2
NUP54-201ENST00000264883 TRAIPQ9BWF2 469 aa13.82□□□□□ -0.2
NUP54-201ENST00000264883 BRCA1P38398 1863 aaKnown RBP13.82□□□□□ -0.2
NUP54-201ENST00000264883 EXOC1LA0A1B0GW35 172 aa13.82□□□□□ -0.2
NUP54-201ENST00000264883 GSTTP1A0A1W2PQM5 241 aa13.82□□□□□ -0.2
NUP54-201ENST00000264883 ZNF862O60290 1169 aa13.82□□□□□ -0.2
NUP54-201ENST00000264883 PIM1P11309 404 aaPredicted RBP13.82□□□□□ -0.2
NUP54-201ENST00000264883 FGFR1P11362 822 aa13.82□□□□□ -0.2
NUP54-201ENST00000264883 GZMAP12544 262 aa13.82□□□□□ -0.2
NUP54-201ENST00000264883 ATF2P15336 505 aa13.82□□□□□ -0.2
NUP54-201ENST00000264883 KRT15P19012 456 aa13.82□□□□□ -0.2
NUP54-201ENST00000264883 IVDP26440 423 aa13.82□□□□□ -0.2
NUP54-201ENST00000264883 OVGP1Q12889 678 aa13.82□□□□□ -0.2
NUP54-201ENST00000264883 GRM2Q14416 872 aa13.82□□□□□ -0.2
NUP54-201ENST00000264883 SGO2Q562F6 1265 aa13.82□□□□□ -0.2
NUP54-201ENST00000264883 C6orf163Q5TEZ5 329 aa13.82□□□□□ -0.2
NUP54-201ENST00000264883 SCUBE1Q8IWY4 988 aa13.82□□□□□ -0.2
NUP54-201ENST00000264883 MYCT1Q8N699 235 aa13.82□□□□□ -0.2
NUP54-201ENST00000264883 CCDC97Q96F63 343 aaPredicted RBP13.82□□□□□ -0.2
NUP54-201ENST00000264883 EIF2AK1Q9BQI3 630 aaKnown RBP13.82□□□□□ -0.2
NUP54-201ENST00000264883 SGIP1Q9BQI5 828 aa13.82□□□□□ -0.2
NUP54-201ENST00000264883 MRIQ9BWK5 157 aa13.82□□□□□ -0.2
NUP54-201ENST00000264883 OSBPL8Q9BZF1 889 aa13.82□□□□□ -0.2
NUP54-201ENST00000264883 NYAP2Q9P242 653 aa13.82□□□□□ -0.2
NUP54-201ENST00000264883 DNAJB4Q9UDY4 337 aa13.82□□□□□ -0.2
NUP54-201ENST00000264883 RSPH10B2B2RC85 870 aa13.81□□□□□ -0.2
NUP54-201ENST00000264883 RSPH10BP0C881 870 aa13.81□□□□□ -0.2
NUP54-201ENST00000264883 RARBP10826 455 aa13.81□□□□□ -0.2
NUP54-201ENST00000264883 ADCY8P40145 1251 aa13.81□□□□□ -0.2
NUP54-201ENST00000264883 TGFB2P61812 414 aa13.81□□□□□ -0.2
NUP54-201ENST00000264883 PICALMQ13492 652 aa13.81□□□□□ -0.2
NUP54-201ENST00000264883 PTK6Q13882 451 aa13.81□□□□□ -0.2
NUP54-201ENST00000264883 RASA3Q14644 834 aa13.81□□□□□ -0.2
NUP54-201ENST00000264883 MAPK6Q16659 721 aa13.81□□□□□ -0.2
NUP54-201ENST00000264883 LVRNQ6Q4G3 990 aa13.81□□□□□ -0.2
NUP54-201ENST00000264883 NET1Q7Z628 596 aaPredicted RBP13.81□□□□□ -0.2
NUP54-201ENST00000264883 RASSF3Q86WH2 238 aa13.81□□□□□ -0.2
NUP54-201ENST00000264883 RTKN2Q8IZC4 609 aa13.81□□□□□ -0.2
NUP54-201ENST00000264883 KIAA1586Q9HCI6 787 aa13.81□□□□□ -0.2
NUP54-201ENST00000264883 BARX2Q9UMQ3 279 aaPredicted RBP13.81□□□□□ -0.2
NUP54-201ENST00000264883 SEC23IPQ9Y6Y8 1000 aaKnown RBP13.81□□□□□ -0.2
NUP54-201ENST00000264883 MSH4O15457 936 aa13.81□□□□□ -0.2
NUP54-201ENST00000264883 SORBS3O60504 671 aa13.81□□□□□ -0.2
NUP54-201ENST00000264883 MAGEC1O60732 1142 aa13.81□□□□□ -0.2
NUP54-201ENST00000264883 CIB2O75838 187 aa13.81□□□□□ -0.2
NUP54-201ENST00000264883 USP1O94782 785 aa13.81□□□□□ -0.2
NUP54-201ENST00000264883 ERFP50548 548 aa13.81□□□□□ -0.2
NUP54-201ENST00000264883 GALK1P51570 392 aa13.81□□□□□ -0.2
NUP54-201ENST00000264883 PHEXP78562 749 aa13.81□□□□□ -0.2
NUP54-201ENST00000264883 BFSP1Q12934 665 aa13.81□□□□□ -0.2
NUP54-201ENST00000264883 KRT72Q14CN4 511 aa13.81□□□□□ -0.2
NUP54-201ENST00000264883 LLGL1Q15334 1064 aa13.81□□□□□ -0.2
NUP54-201ENST00000264883 PKN2Q16513 984 aaKnown RBP13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms