RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 C15orf41Q9Y2V0 281 aa13.35□□□□□ -0.27
LIG1-201ENST00000263274 IKBKGQ9Y6K9 419 aa13.35□□□□□ -0.27
LIG1-201ENST00000263274 KAT6AQ92794 2004 aa13.35□□□□□ -0.27
LIG1-201ENST00000263274 PIK3R2O00459 728 aa13.35□□□□□ -0.27
LIG1-201ENST00000263274 CENPCQ03188 943 aa13.35□□□□□ -0.27
LIG1-201ENST00000263274 TRPC3Q13507 836 aa13.35□□□□□ -0.27
LIG1-201ENST00000263274 CCDC6Q16204 474 aa13.35□□□□□ -0.27
LIG1-201ENST00000263274 SYDE1Q6ZW31 735 aaPredicted RBP13.35□□□□□ -0.27
LIG1-201ENST00000263274 ENOSF1Q7L5Y1 443 aa13.35□□□□□ -0.27
LIG1-201ENST00000263274 RHPN2Q8IUC4 686 aa13.35□□□□□ -0.27
LIG1-201ENST00000263274 MFSD14AQ96MC6 490 aa13.35□□□□□ -0.27
LIG1-201ENST00000263274 KIAA1586Q9HCI6 787 aa13.35□□□□□ -0.27
LIG1-201ENST00000263274 NPM3O75607 178 aaKnown RBP13.34□□□□□ -0.27
LIG1-201ENST00000263274 PSAPP07602 524 aa13.34□□□□□ -0.27
LIG1-201ENST00000263274 SRGAP2CP0DJJ0 459 aa13.34□□□□□ -0.27
LIG1-201ENST00000263274 ATP2A2P16615 1042 aaKnown RBP13.34□□□□□ -0.27
LIG1-201ENST00000263274 PTGER2P43116 358 aa13.34□□□□□ -0.27
LIG1-201ENST00000263274 GAD2Q05329 585 aa13.34□□□□□ -0.27
LIG1-201ENST00000263274 MGAT5Q09328 741 aa13.34□□□□□ -0.27
LIG1-201ENST00000263274 NCOA4Q13772 614 aa13.34□□□□□ -0.27
LIG1-201ENST00000263274 EFTUD2Q15029 972 aaKnown RBP eCLIP13.34□□□□□ -0.271e-6■■■■■ 30.3
LIG1-201ENST00000263274 MTFR1Q15390 333 aa13.34□□□□□ -0.27
LIG1-201ENST00000263274 CENPUQ71F23 418 aa13.34□□□□□ -0.27
LIG1-201ENST00000263274 ABRAQ8N0Z2 381 aa13.34□□□□□ -0.27
LIG1-201ENST00000263274 MCPH1Q8NEM0 835 aa13.34□□□□□ -0.27
LIG1-201ENST00000263274 ZBTB10Q96DT7 871 aa13.34□□□□□ -0.27
LIG1-201ENST00000263274 CALN1Q9BXU9 219 aa13.34□□□□□ -0.27
LIG1-201ENST00000263274 CCDC134Q9H6E4 229 aa13.34□□□□□ -0.27
LIG1-201ENST00000263274 APOBEC3GQ9HC16 384 aaKnown RBP13.34□□□□□ -0.27
LIG1-201ENST00000263274 PARVAQ9NVD7 372 aa13.34□□□□□ -0.27
LIG1-201ENST00000263274 COQ4Q9Y3A0 265 aa13.34□□□□□ -0.27
LIG1-201ENST00000263274 NUB1Q9Y5A7 615 aa13.34□□□□□ -0.27
LIG1-201ENST00000263274 ATRNL1Q5VV63 1379 aa13.34□□□□□ -0.27
LIG1-201ENST00000263274 KIF3CO14782 793 aa13.34□□□□□ -0.27
LIG1-201ENST00000263274 PDHA1P08559 390 aa13.34□□□□□ -0.27
LIG1-201ENST00000263274 MYBL1P10243 752 aa13.34□□□□□ -0.27
LIG1-201ENST00000263274 CCND2P30279 289 aa13.34□□□□□ -0.27
LIG1-201ENST00000263274 SLC1A5Q15758 541 aa13.34□□□□□ -0.27
LIG1-201ENST00000263274 LONP2Q86WA8 852 aa13.34□□□□□ -0.27
LIG1-201ENST00000263274 CTAGE3PQ8IX95 158 aa13.34□□□□□ -0.27
LIG1-201ENST00000263274 ZNF606Q8WXB4 792 aa13.34□□□□□ -0.27
LIG1-201ENST00000263274 CYP26B1Q9NR63 512 aa13.34□□□□□ -0.27
LIG1-201ENST00000263274 TXLNGQ9NUQ3 528 aa13.34□□□□□ -0.27
LIG1-201ENST00000263274 SCINQ9Y6U3 715 aa13.34□□□□□ -0.27
LIG1-201ENST00000263274 PTPRJQ12913 1337 aa13.34□□□□□ -0.27
LIG1-201ENST00000263274 EXTL3O43909 919 aa13.34□□□□□ -0.27
LIG1-201ENST00000263274 DGAT1O75907 488 aa13.34□□□□□ -0.27
LIG1-201ENST00000263274 MAP3K6O95382 1288 aa13.34□□□□□ -0.27
LIG1-201ENST00000263274 MARK3P27448 753 aa13.34□□□□□ -0.27
LIG1-201ENST00000263274 RAD23BP54727 409 aa13.34□□□□□ -0.27
LIG1-201ENST00000263274 NOMO3P69849 1222 aa13.34□□□□□ -0.27
LIG1-201ENST00000263274 THNSL1Q8IYQ7 743 aa13.34□□□□□ -0.27
LIG1-201ENST00000263274 RAB3IPQ96QF0 476 aaPredicted RBP13.34□□□□□ -0.27
LIG1-201ENST00000263274 JPH1Q9HDC5 661 aaPredicted RBP13.34□□□□□ -0.27
LIG1-201ENST00000263274 EME2A4GXA9 379 aaPredicted RBP13.33□□□□□ -0.28
LIG1-201ENST00000263274 CFAP69A5D8W1 941 aa13.33□□□□□ -0.28
LIG1-201ENST00000263274 CCND1P24385 295 aa13.33□□□□□ -0.28
LIG1-201ENST00000263274 NRLP54845 237 aa13.33□□□□□ -0.28
LIG1-201ENST00000263274 LMNB2Q03252 620 aa13.33□□□□□ -0.28
LIG1-201ENST00000263274 TFDP1Q14186 410 aa13.33□□□□□ -0.28
LIG1-201ENST00000263274 ZNF268Q14587 947 aaPredicted RBP13.33□□□□□ -0.28
LIG1-201ENST00000263274 C3orf62Q6ZUJ4 267 aa13.33□□□□□ -0.28
LIG1-201ENST00000263274 HSPH1Q92598 858 aa13.33□□□□□ -0.28
LIG1-201ENST00000263274 TTC17Q96AE7 1141 aa13.33□□□□□ -0.28
LIG1-201ENST00000263274 AVENQ9NQS1 362 aaPredicted RBP13.33□□□□□ -0.28
LIG1-201ENST00000263274 SLC9A2Q9UBY0 812 aa13.33□□□□□ -0.28
LIG1-201ENST00000263274 IP6K2Q9UHH9 426 aa13.33□□□□□ -0.28
LIG1-201ENST00000263274 WDR46O15213 610 aaKnown RBP13.33□□□□□ -0.28
LIG1-201ENST00000263274 PSMA2P25787 234 aa13.33□□□□□ -0.28
LIG1-201ENST00000263274 EPHB2P29323 1055 aa13.33□□□□□ -0.28
LIG1-201ENST00000263274 ACTR2P61160 394 aa13.33□□□□□ -0.28
LIG1-201ENST00000263274 SPDYE2Q495Y8 402 aa13.33□□□□□ -0.28
LIG1-201ENST00000263274 FYB2Q5VWT5 728 aa13.33□□□□□ -0.28
LIG1-201ENST00000263274 CGB2Q6NT52 195 aa13.33□□□□□ -0.28
LIG1-201ENST00000263274 MON1BQ7L1V2 547 aa13.33□□□□□ -0.28
LIG1-201ENST00000263274 EMC1Q8N766 993 aa13.33□□□□□ -0.28
LIG1-201ENST00000263274 EXD1Q8NHP7 514 aa13.33□□□□□ -0.28
LIG1-201ENST00000263274 CCHCR1Q8TD31 782 aa13.33□□□□□ -0.28
LIG1-201ENST00000263274 SLC7A3Q8WY07 619 aa13.33□□□□□ -0.28
LIG1-201ENST00000263274 AKT1S1Q96B36 256 aa13.33□□□□□ -0.28
LIG1-201ENST00000263274 RBM41Q96IZ5 413 aaKnown RBP13.33□□□□□ -0.28
LIG1-201ENST00000263274 NUDCD1Q96RS6 583 aa13.33□□□□□ -0.28
LIG1-201ENST00000263274 KIAA1683Q9H0B3 1180 aa13.33□□□□□ -0.28
LIG1-201ENST00000263274 XPNPEP1Q9NQW7 623 aa13.33□□□□□ -0.28
LIG1-201ENST00000263274 USH1CQ9Y6N9 552 aa13.33□□□□□ -0.28
LIG1-201ENST00000263274 DNALI1O14645 258 aaPredicted RBP13.32□□□□□ -0.28
LIG1-201ENST00000263274 PSTPIP1O43586 416 aa13.32□□□□□ -0.28
LIG1-201ENST00000263274 AP1G2O75843 785 aa13.32□□□□□ -0.28
LIG1-201ENST00000263274 MKRN3Q13064 507 aaKnown RBP13.32□□□□□ -0.28
LIG1-201ENST00000263274 EMC2Q15006 297 aa13.32□□□□□ -0.28
LIG1-201ENST00000263274 HIF1AQ16665 826 aa13.32□□□□□ -0.28
LIG1-201ENST00000263274 ZACNQ401N2 412 aa13.32□□□□□ -0.28
LIG1-201ENST00000263274 GPAT2Q6NUI2 795 aa13.32□□□□□ -0.28
LIG1-201ENST00000263274 ZC3H18Q86VM9 953 aaKnown RBP13.32□□□□□ -0.28
LIG1-201ENST00000263274 ZFP69BQ9UJL9 534 aa13.32□□□□□ -0.28
LIG1-201ENST00000263274 CST8O60676 142 aa13.32□□□□□ -0.28
LIG1-201ENST00000263274 PEX10O60683 326 aa13.32□□□□□ -0.28
LIG1-201ENST00000263274 CST3P01034 146 aaPredicted RBP13.32□□□□□ -0.28
LIG1-201ENST00000263274 ADRA1DP25100 572 aa13.32□□□□□ -0.28
LIG1-201ENST00000263274 YWHAGP61981 247 aaKnown RBP eCLIP13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms