RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 WDR72Q3MJ13 1102 aa13.72□□□□□ -0.21
SPTLC1-201ENST00000262554 DNAJC24Q6P3W2 148 aa13.72□□□□□ -0.21
SPTLC1-201ENST00000262554 RUFY4Q6ZNE9 571 aa13.72□□□□□ -0.21
SPTLC1-201ENST00000262554 KATNAL2Q8IYT4 538 aa13.72□□□□□ -0.21
SPTLC1-201ENST00000262554 C1orf127Q8N9H9 656 aa13.72□□□□□ -0.21
SPTLC1-201ENST00000262554 SLCO2A1Q92959 643 aa13.72□□□□□ -0.21
SPTLC1-201ENST00000262554 PKNOX2Q96KN3 472 aa13.72□□□□□ -0.21
SPTLC1-201ENST00000262554 ATP6V1G3Q96LB4 118 aa13.72□□□□□ -0.21
SPTLC1-201ENST00000262554 ADPGKQ9BRR6 497 aa13.72□□□□□ -0.21
SPTLC1-201ENST00000262554 FAM129AQ9BZQ8 928 aa13.72□□□□□ -0.21
SPTLC1-201ENST00000262554 HOMER3Q9NSC5 361 aa13.72□□□□□ -0.21
SPTLC1-201ENST00000262554 MTRF1LQ9UGC7 380 aaKnown RBP13.72□□□□□ -0.21
SPTLC1-201ENST00000262554 SIX4Q9UIU6 781 aa13.72□□□□□ -0.21
SPTLC1-201ENST00000262554 USTQ9Y2C2 406 aa13.72□□□□□ -0.21
SPTLC1-201ENST00000262554 ATP8A1Q9Y2Q0 1164 aa13.72□□□□□ -0.21
SPTLC1-201ENST00000262554 PTPN22Q9Y2R2 807 aa13.72□□□□□ -0.21
SPTLC1-201ENST00000262554 ZNF236Q9UL36 1845 aa13.72□□□□□ -0.21
SPTLC1-201ENST00000262554 TMEM191CA6NGB0 347 aa13.72□□□□□ -0.21
SPTLC1-201ENST00000262554 SLC15A5A6NIM6 579 aa13.72□□□□□ -0.21
SPTLC1-201ENST00000262554 A6NNZ2 444 aa13.72□□□□□ -0.21
SPTLC1-201ENST00000262554 H0YGN5 161 aa13.72□□□□□ -0.21
SPTLC1-201ENST00000262554 SHOX2O60902 331 aaPredicted RBP13.72□□□□□ -0.21
SPTLC1-201ENST00000262554 RPS6KA5O75582 802 aa13.72□□□□□ -0.21
SPTLC1-201ENST00000262554 PAEPP09466 180 aa13.72□□□□□ -0.21
SPTLC1-201ENST00000262554 P4HA1P13674 534 aa13.72□□□□□ -0.21
SPTLC1-201ENST00000262554 CD19P15391 556 aa13.72□□□□□ -0.21
SPTLC1-201ENST00000262554 CETN2P41208 172 aa13.72□□□□□ -0.21
SPTLC1-201ENST00000262554 ZSCAN26Q16670 478 aa13.72□□□□□ -0.21
SPTLC1-201ENST00000262554 TUBB8Q3ZCM7 444 aa13.72□□□□□ -0.21
SPTLC1-201ENST00000262554 KCTD16Q68DU8 428 aa13.72□□□□□ -0.21
SPTLC1-201ENST00000262554 ZNF410Q86VK4 478 aa13.72□□□□□ -0.21
SPTLC1-201ENST00000262554 ERICH1Q86X53 443 aa13.72□□□□□ -0.21
SPTLC1-201ENST00000262554 GRK7Q8WTQ7 553 aa13.72□□□□□ -0.21
SPTLC1-201ENST00000262554 C1orf54Q8WWF1 131 aa13.72□□□□□ -0.21
SPTLC1-201ENST00000262554 TFAP2BQ92481 460 aa13.72□□□□□ -0.21
SPTLC1-201ENST00000262554 CAPS2Q9BXY5 557 aa13.72□□□□□ -0.21
SPTLC1-201ENST00000262554 TXLNGYQ9BZA5 131 aa13.72□□□□□ -0.21
SPTLC1-201ENST00000262554 TMBIM4Q9HC24 238 aa13.72□□□□□ -0.21
SPTLC1-201ENST00000262554 GRHL1Q9NZI5 618 aa13.72□□□□□ -0.21
SPTLC1-201ENST00000262554 NFS1Q9Y697 457 aa13.72□□□□□ -0.21
SPTLC1-201ENST00000262554 CITO14578 2027 aa13.71□□□□□ -0.21
SPTLC1-201ENST00000262554 CELF2O95319 508 aaKnown RBP13.71□□□□□ -0.21
SPTLC1-201ENST00000262554 GJB6O95452 261 aa13.71□□□□□ -0.21
SPTLC1-201ENST00000262554 ITGB3P05106 788 aa13.71□□□□□ -0.21
SPTLC1-201ENST00000262554 POLR2BP30876 1174 aaKnown RBP13.71□□□□□ -0.21
SPTLC1-201ENST00000262554 KCNJ1P48048 391 aa13.71□□□□□ -0.21
SPTLC1-201ENST00000262554 TAS2R40P59535 323 aa13.71□□□□□ -0.21
SPTLC1-201ENST00000262554 RPL7AP62424 266 aaKnown RBP13.71□□□□□ -0.21
SPTLC1-201ENST00000262554 SKOR1P84550 965 aa13.71□□□□□ -0.21
SPTLC1-201ENST00000262554 ZNF844Q08AG5 666 aa13.71□□□□□ -0.21
SPTLC1-201ENST00000262554 TMEM132DQ14C87 1099 aa13.71□□□□□ -0.21
SPTLC1-201ENST00000262554 LLGL1Q15334 1064 aa13.71□□□□□ -0.21
SPTLC1-201ENST00000262554 MARCH8Q5T0T0 291 aa13.71□□□□□ -0.21
SPTLC1-201ENST00000262554 DAB2IPQ5VWQ8 1189 aa13.71□□□□□ -0.21
SPTLC1-201ENST00000262554 DCUN1D2Q6PH85 259 aa13.71□□□□□ -0.21
SPTLC1-201ENST00000262554 ZDHHC24Q6UX98 284 aa13.71□□□□□ -0.21
SPTLC1-201ENST00000262554 SYDE1Q6ZW31 735 aaPredicted RBP13.71□□□□□ -0.21
SPTLC1-201ENST00000262554 SH2D3CQ8N5H7 860 aa13.71□□□□□ -0.21
SPTLC1-201ENST00000262554 EXD1Q8NHP7 514 aa13.71□□□□□ -0.21
SPTLC1-201ENST00000262554 FBXO25Q8TCJ0 367 aa13.71□□□□□ -0.21
SPTLC1-201ENST00000262554 ACAP3Q96P50 834 aa13.71□□□□□ -0.21
SPTLC1-201ENST00000262554 LHX5Q9H2C1 402 aa13.71□□□□□ -0.21
SPTLC1-201ENST00000262554 FEZ2Q9UHY8 353 aaPredicted RBP13.71□□□□□ -0.21
SPTLC1-201ENST00000262554 STRIP2Q9ULQ0 834 aa13.71□□□□□ -0.21
SPTLC1-201ENST00000262554 RRN3P2A6NIE6 340 aa13.7□□□□□ -0.22
SPTLC1-201ENST00000262554 TSPAN1O60635 241 aa13.7□□□□□ -0.22
SPTLC1-201ENST00000262554 RALAP11233 206 aa13.7□□□□□ -0.22
SPTLC1-201ENST00000262554 RAP1GAPP47736 663 aa13.7□□□□□ -0.22
SPTLC1-201ENST00000262554 PMS2P54278 862 aa13.7□□□□□ -0.22
SPTLC1-201ENST00000262554 EIF3BP55884 814 aaKnown RBP13.7□□□□□ -0.22
SPTLC1-201ENST00000262554 SNX1Q13596 522 aa13.7□□□□□ -0.22
SPTLC1-201ENST00000262554 SLC10A6Q3KNW5 377 aa13.7□□□□□ -0.22
SPTLC1-201ENST00000262554 KIAA0319LQ8IZA0 1049 aa13.7□□□□□ -0.22
SPTLC1-201ENST00000262554 WDTC1Q8N5D0 677 aa13.7□□□□□ -0.22
SPTLC1-201ENST00000262554 OR2W6PQ8NHA6 318 aa13.7□□□□□ -0.22
SPTLC1-201ENST00000262554 NPLOC4Q8TAT6 608 aa13.7□□□□□ -0.22
SPTLC1-201ENST00000262554 MCEEQ96PE7 176 aa13.7□□□□□ -0.22
SPTLC1-201ENST00000262554 PTPN18Q99952 460 aa13.7□□□□□ -0.22
SPTLC1-201ENST00000262554 DCLK3Q9C098 648 aa13.7□□□□□ -0.22
SPTLC1-201ENST00000262554 CENPHQ9H3R5 247 aa13.7□□□□□ -0.22
SPTLC1-201ENST00000262554 VRTNQ9H8Y1 702 aa13.7□□□□□ -0.22
SPTLC1-201ENST00000262554 CYP3A43Q9HB55 503 aa13.7□□□□□ -0.22
SPTLC1-201ENST00000262554 CALCOCO1Q9P1Z2 691 aa13.7□□□□□ -0.22
SPTLC1-201ENST00000262554 A0A1B0GUA9 196 aa13.7□□□□□ -0.22
SPTLC1-201ENST00000262554 TCRBV5S1A1TA0A578 114 aa13.7□□□□□ -0.22
SPTLC1-201ENST00000262554 MEFVO15553 781 aaPredicted RBP13.7□□□□□ -0.22
SPTLC1-201ENST00000262554 GAS8O95995 478 aa13.7□□□□□ -0.22
SPTLC1-201ENST00000262554 IVLP07476 585 aa13.7□□□□□ -0.22
SPTLC1-201ENST00000262554 NR1D1P20393 614 aa13.7□□□□□ -0.22
SPTLC1-201ENST00000262554 GJC1P36383 396 aa13.7□□□□□ -0.22
SPTLC1-201ENST00000262554 RAD23BP54727 409 aa13.7□□□□□ -0.22
SPTLC1-201ENST00000262554 KRT17Q04695 432 aa13.7□□□□□ -0.22
SPTLC1-201ENST00000262554 CALCOCO2Q13137 446 aa13.7□□□□□ -0.22
SPTLC1-201ENST00000262554 PIGHQ14442 188 aaPredicted RBP13.7□□□□□ -0.22
SPTLC1-201ENST00000262554 DNAJC21Q5F1R6 531 aaKnown RBP13.7□□□□□ -0.22
SPTLC1-201ENST00000262554 DENND1BQ6P3S1 775 aa13.7□□□□□ -0.22
SPTLC1-201ENST00000262554 KDM7AQ6ZMT4 941 aa13.7□□□□□ -0.22
SPTLC1-201ENST00000262554 APBB1IPQ7Z5R6 666 aaPredicted RBP13.7□□□□□ -0.22
SPTLC1-201ENST00000262554 NT5DC4Q86YG4 428 aa13.7□□□□□ -0.22
SPTLC1-201ENST00000262554 RCOR2Q8IZ40 523 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms