RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 E5RJQ4 531 aa15.14■□□□□ 0.01
SDC1-201ENST00000254351 FCHO1O14526 889 aa15.14■□□□□ 0.01
SDC1-201ENST00000254351 SLC16A4O15374 487 aa15.14■□□□□ 0.01
SDC1-201ENST00000254351 GAS7O60861 476 aa15.14■□□□□ 0.01
SDC1-201ENST00000254351 SMARCA1P28370 1054 aa15.14■□□□□ 0.01
SDC1-201ENST00000254351 USP46P62068 366 aa15.14■□□□□ 0.01
SDC1-201ENST00000254351 BTKQ06187 659 aa15.14■□□□□ 0.01
SDC1-201ENST00000254351 NFIAQ12857 509 aa15.14■□□□□ 0.01
SDC1-201ENST00000254351 BBS9Q3SYG4 887 aa15.14■□□□□ 0.01
SDC1-201ENST00000254351 CCDC174Q6PII3 467 aa15.14■□□□□ 0.01
SDC1-201ENST00000254351 C3orf62Q6ZUJ4 267 aa15.14■□□□□ 0.01
SDC1-201ENST00000254351 GTF3C4Q9UKN8 822 aa15.14■□□□□ 0.01
SDC1-201ENST00000254351 PCDHAC2Q9Y5I4 1007 aa15.14■□□□□ 0.01
SDC1-201ENST00000254351 SORBS3O60504 671 aa15.13■□□□□ 0.01
SDC1-201ENST00000254351 GPSM2P81274 684 aa15.13■□□□□ 0.01
SDC1-201ENST00000254351 TPTE2Q6XPS3 522 aa15.13■□□□□ 0.01
SDC1-201ENST00000254351 RHPN2Q8IUC4 686 aa15.13■□□□□ 0.01
SDC1-201ENST00000254351 ARHGEF1Q92888 912 aaKnown RBP15.13■□□□□ 0.01
SDC1-201ENST00000254351 RILPQ96NA2 401 aa15.13■□□□□ 0.01
SDC1-201ENST00000254351 FIZ1Q96SL8 496 aa15.13■□□□□ 0.01
SDC1-201ENST00000254351 SPATA16Q9BXB7 569 aa15.13■□□□□ 0.01
SDC1-201ENST00000254351 CYP4F11Q9HBI6 524 aa15.13■□□□□ 0.01
SDC1-201ENST00000254351 DAGLAQ9Y4D2 1042 aa15.13■□□□□ 0.01
SDC1-201ENST00000254351 TNS1Q9HBL0 1735 aaKnown RBP15.13■□□□□ 0.01
SDC1-201ENST00000254351 PIK3CDO00329 1044 aa15.13■□□□□ 0.01
SDC1-201ENST00000254351 ADRA2BP18089 450 aa15.13■□□□□ 0.01
SDC1-201ENST00000254351 HIRAP54198 1017 aaPredicted RBP15.13■□□□□ 0.01
SDC1-201ENST00000254351 RASA2Q15283 850 aa15.13■□□□□ 0.01
SDC1-201ENST00000254351 RGS9BPQ6ZS82 235 aa15.13■□□□□ 0.01
SDC1-201ENST00000254351 RASSF3Q86WH2 238 aa15.13■□□□□ 0.01
SDC1-201ENST00000254351 POU5F2Q8N7G0 328 aa15.13■□□□□ 0.01
SDC1-201ENST00000254351 C12orf50Q8NA57 414 aaPredicted RBP15.13■□□□□ 0.01
SDC1-201ENST00000254351 GSTCDQ8NEC7 633 aa15.13■□□□□ 0.01
SDC1-201ENST00000254351 HSPBP1Q9NZL4 362 aa15.13■□□□□ 0.01
SDC1-201ENST00000254351 MROH7Q68CQ1 1323 aa15.13■□□□□ 0.01
SDC1-201ENST00000254351 CYP1A2P05177 515 aa15.12■□□□□ 0.01
SDC1-201ENST00000254351 ADRB2P07550 413 aa15.12■□□□□ 0.01
SDC1-201ENST00000254351 ANPEPP15144 967 aa15.12■□□□□ 0.01
SDC1-201ENST00000254351 GAP43P17677 238 aa15.12■□□□□ 0.01
SDC1-201ENST00000254351 OCRLQ01968 901 aa15.12■□□□□ 0.01
SDC1-201ENST00000254351 DSG1Q02413 1049 aa15.12■□□□□ 0.01
SDC1-201ENST00000254351 SYDE2Q5VT97 1194 aa15.12■□□□□ 0.01
SDC1-201ENST00000254351 CEP128Q6ZU80 1094 aa15.12■□□□□ 0.01
SDC1-201ENST00000254351 RBM15BQ8NDT2 890 aaKnown RBP15.12■□□□□ 0.01
SDC1-201ENST00000254351 ZFAND2BQ8WV99 257 aa15.12■□□□□ 0.01
SDC1-201ENST00000254351 WDR18Q9BV38 432 aa15.12■□□□□ 0.01
SDC1-201ENST00000254351 SLC13A1Q9BZW2 595 aa15.12■□□□□ 0.01
SDC1-201ENST00000254351 ASCC2Q9H1I8 757 aaPredicted RBP15.12■□□□□ 0.01
SDC1-201ENST00000254351 NDE1Q9NXR1 346 aa15.12■□□□□ 0.01
SDC1-201ENST00000254351 STX18Q9P2W9 335 aaKnown RBP15.12■□□□□ 0.01
SDC1-201ENST00000254351 MYOCOSA0A1B0GUC4 107 aa15.12■□□□□ 0.01
SDC1-201ENST00000254351 FAM155BO75949 473 aa15.12■□□□□ 0.01
SDC1-201ENST00000254351 SNHG28P0DPA3 235 aa15.12■□□□□ 0.01
SDC1-201ENST00000254351 HARSP12081 509 aaKnown RBP15.12■□□□□ 0.01
SDC1-201ENST00000254351 SOX10P56693 466 aa15.12■□□□□ 0.01
SDC1-201ENST00000254351 PEX6Q13608 980 aa15.12■□□□□ 0.01
SDC1-201ENST00000254351 MSS51Q4VC12 460 aa15.12■□□□□ 0.01
SDC1-201ENST00000254351 TRAPPC3LQ5T215 181 aa15.12■□□□□ 0.01
SDC1-201ENST00000254351 TREML1Q86YW5 311 aa15.12■□□□□ 0.01
SDC1-201ENST00000254351 PYROXD1Q8WU10 500 aa15.12■□□□□ 0.01
SDC1-201ENST00000254351 PTCD3Q96EY7 689 aaKnown RBP15.12■□□□□ 0.01
SDC1-201ENST00000254351 TRAPPC9Q96Q05 1148 aa15.12■□□□□ 0.01
SDC1-201ENST00000254351 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP15.12■□□□□ 0.01
SDC1-201ENST00000254351 TYROBPO43914 113 aa15.12■□□□□ 0.01
SDC1-201ENST00000254351 LPXNO60711 386 aa15.12■□□□□ 0.01
SDC1-201ENST00000254351 PDE5AO76074 875 aa15.12■□□□□ 0.01
SDC1-201ENST00000254351 GSTA2P09210 222 aa15.12■□□□□ 0.01
SDC1-201ENST00000254351 C1orf220Q5T0J3 134 aa15.12■□□□□ 0.01
SDC1-201ENST00000254351 GPATCH4Q5T3I0 446 aaKnown RBP15.12■□□□□ 0.01
SDC1-201ENST00000254351 SPOPLQ6IQ16 392 aa15.12■□□□□ 0.01
SDC1-201ENST00000254351 FBXO11Q86XK2 927 aa15.12■□□□□ 0.01
SDC1-201ENST00000254351 SLC26A7Q8TE54 656 aa15.12■□□□□ 0.01
SDC1-201ENST00000254351 DDX27Q96GQ7 796 aaKnown RBP15.12■□□□□ 0.01
SDC1-201ENST00000254351 PAFAH2Q99487 392 aa15.12■□□□□ 0.01
SDC1-201ENST00000254351 LXNQ9BS40 222 aa15.12■□□□□ 0.01
SDC1-201ENST00000254351 EURLQ9NYK6 297 aa15.12■□□□□ 0.01
SDC1-201ENST00000254351 SMG5Q9UPR3 1016 aaKnown RBP15.12■□□□□ 0.01
SDC1-201ENST00000254351 MAGEB2O15479 319 aa15.11■□□□□ 0.01
SDC1-201ENST00000254351 ATP6V1B1P15313 513 aa15.11■□□□□ 0.01
SDC1-201ENST00000254351 SHMT1P34896 483 aa15.11■□□□□ 0.01
SDC1-201ENST00000254351 MFAP3P55082 362 aa15.11■□□□□ 0.01
SDC1-201ENST00000254351 PEX3P56589 373 aa15.11■□□□□ 0.01
SDC1-201ENST00000254351 UBAP2LQ14157 1087 aaKnown RBP15.11■□□□□ 0.01
SDC1-201ENST00000254351 LIN52Q52LA3 116 aa15.11■□□□□ 0.01
SDC1-201ENST00000254351 ANKRD22Q5VYY1 191 aa15.11■□□□□ 0.01
SDC1-201ENST00000254351 ARID3BQ8IVW6 561 aaPredicted RBP15.11■□□□□ 0.01
SDC1-201ENST00000254351 FAM71AQ8IYT1 594 aa15.11■□□□□ 0.01
SDC1-201ENST00000254351 ZCCHC9Q8N567 271 aaKnown RBP15.11■□□□□ 0.01
SDC1-201ENST00000254351 HIC2Q96JB3 615 aa15.11■□□□□ 0.01
SDC1-201ENST00000254351 MPP4Q96JB8 637 aa15.11■□□□□ 0.01
SDC1-201ENST00000254351 ACAP3Q96P50 834 aa15.11■□□□□ 0.01
SDC1-201ENST00000254351 PANX3Q96QZ0 392 aa15.11■□□□□ 0.01
SDC1-201ENST00000254351 DMAP1Q9NPF5 467 aaPredicted RBP15.11■□□□□ 0.01
SDC1-201ENST00000254351 PSMC3IPQ9P2W1 217 aaPredicted RBP15.11■□□□□ 0.01
SDC1-201ENST00000254351 UBR3Q6ZT12 1888 aa15.11■□□□□ 0.01
SDC1-201ENST00000254351 MUTP22033 750 aa15.11■□□□□ 0.01
SDC1-201ENST00000254351 ATXN3P54252 364 aaPredicted RBP15.11■□□□□ 0.01
SDC1-201ENST00000254351 DYNC1I2Q13409 638 aaKnown RBP15.11■□□□□ 0.01
SDC1-201ENST00000254351 SMTNL2Q2TAL5 461 aa15.11■□□□□ 0.01
SDC1-201ENST00000254351 TXNRD3NBQ6F5E7 133 aa15.11■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms