RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 HMGB3O15347 200 aaKnown RBP13.35□□□□□ -0.27
USP40-201ENST00000251722 ACADSP16219 412 aa13.35□□□□□ -0.27
USP40-201ENST00000251722 FGFR2P21802 821 aa13.35□□□□□ -0.27
USP40-201ENST00000251722 HOXA10P31260 410 aaPredicted RBP13.35□□□□□ -0.27
USP40-201ENST00000251722 DSG3P32926 999 aa13.35□□□□□ -0.27
USP40-201ENST00000251722 GNL1P36915 607 aaPredicted RBP13.35□□□□□ -0.27
USP40-201ENST00000251722 MDM2Q00987 491 aaPredicted RBP13.35□□□□□ -0.27
USP40-201ENST00000251722 PTPAQ15257 358 aa13.35□□□□□ -0.27
USP40-201ENST00000251722 TAS2R42Q7RTR8 314 aa13.35□□□□□ -0.27
USP40-201ENST00000251722 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP13.35□□□□□ -0.27
USP40-201ENST00000251722 SPATA16Q9BXB7 569 aa13.35□□□□□ -0.27
USP40-201ENST00000251722 EPN3Q9H201 632 aa13.35□□□□□ -0.27
USP40-201ENST00000251722 GOLPH3LQ9H4A5 285 aa13.35□□□□□ -0.27
USP40-201ENST00000251722 POLLQ9UGP5 575 aa13.35□□□□□ -0.27
USP40-201ENST00000251722 SEPT3Q9UH03 358 aa13.35□□□□□ -0.27
USP40-201ENST00000251722 DBR1Q9UK59 544 aaKnown RBP13.35□□□□□ -0.27
USP40-201ENST00000251722 FNDC3AQ9Y2H6 1198 aaKnown RBP13.35□□□□□ -0.27
USP40-201ENST00000251722 ADGRB1O14514 1584 aa13.35□□□□□ -0.27
USP40-201ENST00000251722 EEF2KO00418 725 aaKnown RBP13.35□□□□□ -0.27
USP40-201ENST00000251722 SYF2O95926 243 aaKnown RBP13.35□□□□□ -0.27
USP40-201ENST00000251722 LHX1P48742 406 aa13.35□□□□□ -0.27
USP40-201ENST00000251722 METTL7BQ6UX53 244 aa13.35□□□□□ -0.27
USP40-201ENST00000251722 OMA1Q96E52 524 aa13.35□□□□□ -0.27
USP40-201ENST00000251722 OTUB1Q96FW1 271 aaPredicted RBP13.35□□□□□ -0.27
USP40-201ENST00000251722 EGFL8Q99944 293 aa13.35□□□□□ -0.27
USP40-201ENST00000251722 STN1Q9H668 368 aaKnown RBP13.35□□□□□ -0.27
USP40-201ENST00000251722 CYP3A43Q9HB55 503 aa13.35□□□□□ -0.27
USP40-201ENST00000251722 PI4K2BG5E9Z4 385 aa13.35□□□□□ -0.27
USP40-201ENST00000251722 DFFAO00273 331 aa13.35□□□□□ -0.27
USP40-201ENST00000251722 PIK3R2O00459 728 aa13.35□□□□□ -0.27
USP40-201ENST00000251722 APOA1P02647 267 aa13.35□□□□□ -0.27
USP40-201ENST00000251722 URODP06132 367 aa13.35□□□□□ -0.27
USP40-201ENST00000251722 PDGFRAP16234 1089 aa13.35□□□□□ -0.27
USP40-201ENST00000251722 RCN2Q14257 317 aa13.35□□□□□ -0.27
USP40-201ENST00000251722 RABGAP1LQ5R372 815 aa13.35□□□□□ -0.27
USP40-201ENST00000251722 CYB5D1Q6P9G0 228 aa13.35□□□□□ -0.27
USP40-201ENST00000251722 LINC00523Q86TU6 105 aa13.35□□□□□ -0.27
USP40-201ENST00000251722 TXNRD3Q86VQ6 643 aa13.35□□□□□ -0.27
USP40-201ENST00000251722 KCNV2Q8TDN2 545 aa13.35□□□□□ -0.27
USP40-201ENST00000251722 DNAJC9Q8WXX5 260 aa13.35□□□□□ -0.27
USP40-201ENST00000251722 AP1M1Q9BXS5 423 aa13.35□□□□□ -0.27
USP40-201ENST00000251722 RTFDC1Q9BY42 306 aaPredicted RBP13.35□□□□□ -0.27
USP40-201ENST00000251722 LZTS1Q9Y250 596 aa13.35□□□□□ -0.27
USP40-201ENST00000251722 MEGF6O75095 1541 aa13.35□□□□□ -0.27
USP40-201ENST00000251722 UBE2Q2LH0YL09 131 aa13.35□□□□□ -0.27
USP40-201ENST00000251722 GOLGA8TH3BQL2 631 aa13.35□□□□□ -0.27
USP40-201ENST00000251722 TRPA1O75762 1119 aa13.35□□□□□ -0.27
USP40-201ENST00000251722 INPP1P49441 399 aa13.35□□□□□ -0.27
USP40-201ENST00000251722 RPS6KA3P51812 740 aa13.35□□□□□ -0.27
USP40-201ENST00000251722 ABCE1P61221 599 aaKnown RBP13.35□□□□□ -0.27
USP40-201ENST00000251722 TRIP13Q15645 432 aaPredicted RBP13.35□□□□□ -0.27
USP40-201ENST00000251722 SLC18A3Q16572 532 aa13.35□□□□□ -0.27
USP40-201ENST00000251722 KIF19Q2TAC6 998 aa13.35□□□□□ -0.27
USP40-201ENST00000251722 MPZL3Q6UWV2 235 aa13.35□□□□□ -0.27
USP40-201ENST00000251722 PID1Q7Z2X4 250 aa13.35□□□□□ -0.27
USP40-201ENST00000251722 GRAMD1AQ96CP6 724 aa13.35□□□□□ -0.27
USP40-201ENST00000251722 TAAR1Q96RJ0 339 aa13.35□□□□□ -0.27
USP40-201ENST00000251722 MRPL46Q9H2W6 279 aaKnown RBP13.35□□□□□ -0.27
USP40-201ENST00000251722 PCSK1NQ9UHG2 260 aa13.35□□□□□ -0.27
USP40-201ENST00000251722 PRELID1Q9Y255 219 aa13.35□□□□□ -0.27
USP40-201ENST00000251722 PCDHB12Q9Y5F1 795 aa13.35□□□□□ -0.27
USP40-201ENST00000251722 KIF20BQ96Q89 1820 aa13.35□□□□□ -0.27
USP40-201ENST00000251722 KLHL33A6NCF5 533 aa13.35□□□□□ -0.27
USP40-201ENST00000251722 HNRNPCL1O60812 293 aaKnown RBP13.35□□□□□ -0.27
USP40-201ENST00000251722 CSPG5O95196 566 aa13.35□□□□□ -0.27
USP40-201ENST00000251722 NPTXRO95502 500 aa13.35□□□□□ -0.27
USP40-201ENST00000251722 MCF2P10911 925 aa13.35□□□□□ -0.27
USP40-201ENST00000251722 CREMQ03060 361 aa13.35□□□□□ -0.27
USP40-201ENST00000251722 NSUN2Q08J23 767 aaKnown RBP eCLIP13.35□□□□□ -0.27
USP40-201ENST00000251722 PCBP1Q15365 356 aaKnown RBP eCLIP13.35□□□□□ -0.27
USP40-201ENST00000251722 ANKRD40Q6AI12 368 aa13.35□□□□□ -0.27
USP40-201ENST00000251722 DCLK2Q8N568 766 aa13.35□□□□□ -0.27
USP40-201ENST00000251722 FAM163AQ96GL9 167 aaPredicted RBP13.35□□□□□ -0.27
USP40-201ENST00000251722 IDI2Q9BXS1 227 aa13.35□□□□□ -0.27
USP40-201ENST00000251722 DNAJC6O75061 913 aa13.34□□□□□ -0.27
USP40-201ENST00000251722 PYGLP06737 847 aa13.34□□□□□ -0.27
USP40-201ENST00000251722 TRIM49P0CI25 452 aa13.34□□□□□ -0.27
USP40-201ENST00000251722 TRIM49CP0CI26 452 aa13.34□□□□□ -0.27
USP40-201ENST00000251722 PSEN1P49768 467 aa13.34□□□□□ -0.27
USP40-201ENST00000251722 RGS4P49798 205 aa13.34□□□□□ -0.27
USP40-201ENST00000251722 EIF3EP60228 445 aaKnown RBP13.34□□□□□ -0.27
USP40-201ENST00000251722 TMPRSS15P98073 1019 aa13.34□□□□□ -0.27
USP40-201ENST00000251722 TNIP2Q8NFZ5 429 aa13.34□□□□□ -0.27
USP40-201ENST00000251722 RAPGEF5Q92565 580 aa13.34□□□□□ -0.27
USP40-201ENST00000251722 MRPS31Q92665 395 aaKnown RBP13.34□□□□□ -0.27
USP40-201ENST00000251722 SEPT5Q99719 369 aaPredicted RBP13.34□□□□□ -0.27
USP40-201ENST00000251722 ASPSCR1Q9BZE9 553 aa13.34□□□□□ -0.27
USP40-201ENST00000251722 SIK2Q9H0K1 926 aa13.34□□□□□ -0.27
USP40-201ENST00000251722 STARD7Q9NQZ5 370 aa13.34□□□□□ -0.27
USP40-201ENST00000251722 HACD3Q9P035 362 aa13.34□□□□□ -0.27
USP40-201ENST00000251722 PAK5Q9P286 719 aa13.34□□□□□ -0.27
USP40-201ENST00000251722 TBX20Q9UMR3 447 aa13.34□□□□□ -0.27
USP40-201ENST00000251722 POLRMTO00411 1230 aaKnown RBP13.34□□□□□ -0.27
USP40-201ENST00000251722 HLA-DRAP01903 254 aa13.34□□□□□ -0.27
USP40-201ENST00000251722 AKR1A1P14550 325 aa13.34□□□□□ -0.27
USP40-201ENST00000251722 CENPCQ03188 943 aa13.34□□□□□ -0.27
USP40-201ENST00000251722 NFE2Q16621 373 aaPredicted RBP13.34□□□□□ -0.27
USP40-201ENST00000251722 MGAT5BQ3V5L5 792 aa13.34□□□□□ -0.27
USP40-201ENST00000251722 C4orf19Q8IY42 314 aa13.34□□□□□ -0.27
USP40-201ENST00000251722 C3orf20Q8ND61 904 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms