RNA–Protein interactions for RNA: ENST00000216877.10

PTPRA-201, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRA, Length 3,725 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-201ENST00000216877 TNFAIP8L3Q5GJ75 292 aa15.41■□□□□ 0.06
PTPRA-201ENST00000216877 AMIGO2Q86SJ2 522 aa15.41■□□□□ 0.06
PTPRA-201ENST00000216877 ADGRA1Q86SQ6 560 aa15.41■□□□□ 0.06
PTPRA-201ENST00000216877 CCT7Q99832 543 aa15.41■□□□□ 0.06
PTPRA-201ENST00000216877 CCDC28BQ9BUN5 200 aa15.41■□□□□ 0.06
PTPRA-201ENST00000216877 MCM9Q9NXL9 1143 aa15.41■□□□□ 0.06
PTPRA-201ENST00000216877 SLC17A7Q9P2U7 560 aa15.41■□□□□ 0.06
PTPRA-201ENST00000216877 A0A0A6YYK5 440 aaPredicted RBP15.41■□□□□ 0.06
PTPRA-201ENST00000216877 PRKCIP41743 596 aa15.41■□□□□ 0.06
PTPRA-201ENST00000216877 GPSM2P81274 684 aa15.41■□□□□ 0.06
PTPRA-201ENST00000216877 MRPS9P82933 396 aaKnown RBP15.41■□□□□ 0.06
PTPRA-201ENST00000216877 PDIA2Q13087 525 aaKnown RBP15.41■□□□□ 0.06
PTPRA-201ENST00000216877 ANKRD20A4Q4UJ75 823 aa15.41■□□□□ 0.06
PTPRA-201ENST00000216877 PCNX4Q63HM2 1172 aa15.41■□□□□ 0.06
PTPRA-201ENST00000216877 LPCAT2Q7L5N7 544 aa15.41■□□□□ 0.06
PTPRA-201ENST00000216877 REXO1Q8N1G1 1221 aaKnown RBP15.41■□□□□ 0.06
PTPRA-201ENST00000216877 MAML3Q96JK9 1138 aa15.41■□□□□ 0.06
PTPRA-201ENST00000216877 FAM111AQ96PZ2 611 aa15.41■□□□□ 0.06
PTPRA-201ENST00000216877 TBC1D23Q9NUY8 699 aa15.41■□□□□ 0.06
PTPRA-201ENST00000216877 THEGQ9P2T0 379 aa15.41■□□□□ 0.06
PTPRA-201ENST00000216877 SUN2Q9UH99 717 aa15.41■□□□□ 0.06
PTPRA-201ENST00000216877 ANKRD36CQ5JPF3 1778 aa15.41■□□□□ 0.06
PTPRA-201ENST00000216877 ADGRA3Q8IWK6 1321 aa15.4■□□□□ 0.06
PTPRA-201ENST00000216877 KLRF2D3W0D1 207 aa15.4■□□□□ 0.06
PTPRA-201ENST00000216877 I3L4J1 428 aa15.4■□□□□ 0.06
PTPRA-201ENST00000216877 CRABP2P29373 138 aa15.4■□□□□ 0.06
PTPRA-201ENST00000216877 PSMD6Q15008 389 aa15.4■□□□□ 0.06
PTPRA-201ENST00000216877 KRT27Q7Z3Y8 459 aa15.4■□□□□ 0.06
PTPRA-201ENST00000216877 FAM186BQ8IYM0 893 aa15.4■□□□□ 0.06
PTPRA-201ENST00000216877 SCFD1Q8WVM8 642 aa15.4■□□□□ 0.06
PTPRA-201ENST00000216877 THAP11Q96EK4 314 aa15.4■□□□□ 0.06
PTPRA-201ENST00000216877 TIMMDC1Q9NPL8 285 aa15.4■□□□□ 0.06
PTPRA-201ENST00000216877 ZNF652Q9Y2D9 606 aa15.4■□□□□ 0.06
PTPRA-201ENST00000216877 MTO1Q9Y2Z2 717 aaKnown RBP15.4■□□□□ 0.06
PTPRA-201ENST00000216877 C4AP0C0L4 1744 aa15.4■□□□□ 0.06
PTPRA-201ENST00000216877 C4BP0C0L5 1744 aa15.4■□□□□ 0.06
PTPRA-201ENST00000216877 USP17L3A6NCW0 530 aa15.4■□□□□ 0.06
PTPRA-201ENST00000216877 USP17L4A6NCW7 530 aa15.4■□□□□ 0.06
PTPRA-201ENST00000216877 KCNQ2O43526 872 aa15.4■□□□□ 0.06
PTPRA-201ENST00000216877 RARBP10826 455 aa15.4■□□□□ 0.06
PTPRA-201ENST00000216877 NPEPPSP55786 919 aa15.4■□□□□ 0.06
PTPRA-201ENST00000216877 PDK1Q15118 436 aa15.4■□□□□ 0.06
PTPRA-201ENST00000216877 ANKDD1AQ495B1 522 aa15.4■□□□□ 0.06
PTPRA-201ENST00000216877 USP17L1Q7RTZ2 530 aa15.4■□□□□ 0.06
PTPRA-201ENST00000216877 TRIM56Q9BRZ2 755 aaKnown RBP15.4■□□□□ 0.06
PTPRA-201ENST00000216877 ATP9BO43861 1147 aa15.4■□□□□ 0.06
PTPRA-201ENST00000216877 BANF1O75531 89 aa15.4■□□□□ 0.06
PTPRA-201ENST00000216877 S100BP04271 92 aaPredicted RBP15.4■□□□□ 0.06
PTPRA-201ENST00000216877 GNA11P29992 359 aa15.4■□□□□ 0.06
PTPRA-201ENST00000216877 GTF2H1P32780 548 aa15.4■□□□□ 0.06
PTPRA-201ENST00000216877 MAP3K21Q5TCX8 1036 aa15.4■□□□□ 0.06
PTPRA-201ENST00000216877 FASTKD5Q7L8L6 764 aaKnown RBP15.4■□□□□ 0.06
PTPRA-201ENST00000216877 TTC25Q96NG3 672 aa15.4■□□□□ 0.06
PTPRA-201ENST00000216877 ACAP3Q96P50 834 aa15.4■□□□□ 0.06
PTPRA-201ENST00000216877 MAK16Q9BXY0 300 aaKnown RBP15.4■□□□□ 0.06
PTPRA-201ENST00000216877 IKZF4Q9H2S9 585 aa15.4■□□□□ 0.06
PTPRA-201ENST00000216877 TLE6Q9H808 572 aa15.4■□□□□ 0.06
PTPRA-201ENST00000216877 CAAP1Q9H8G2 361 aa15.4■□□□□ 0.06
PTPRA-201ENST00000216877 INPP5FQ9Y2H2 1132 aa15.4■□□□□ 0.06
PTPRA-201ENST00000216877 AKAP3O75969 853 aa15.39■□□□□ 0.05
PTPRA-201ENST00000216877 OXSR1O95747 527 aaPredicted RBP15.39■□□□□ 0.05
PTPRA-201ENST00000216877 TMPRSS15P98073 1019 aa15.39■□□□□ 0.05
PTPRA-201ENST00000216877 RELAQ04206 551 aa15.39■□□□□ 0.05
PTPRA-201ENST00000216877 FASTKD3Q14CZ7 662 aaKnown RBP15.39■□□□□ 0.05
PTPRA-201ENST00000216877 RHOT2Q8IXI1 618 aa15.39■□□□□ 0.05
PTPRA-201ENST00000216877 IFT122Q9HBG6 1241 aa15.39■□□□□ 0.05
PTPRA-201ENST00000216877 USP21Q9UK80 565 aa15.39■□□□□ 0.05
PTPRA-201ENST00000216877 COQ6Q9Y2Z9 468 aa15.39■□□□□ 0.05
PTPRA-201ENST00000216877 DDX60Q8IY21 1712 aaKnown RBP15.39■□□□□ 0.05
PTPRA-201ENST00000216877 HOXD11P31277 338 aaPredicted RBP15.39■□□□□ 0.05
PTPRA-201ENST00000216877 VCPP55072 806 aaKnown RBP15.39■□□□□ 0.05
PTPRA-201ENST00000216877 YWHAGP61981 247 aaKnown RBP eCLIP15.39■□□□□ 0.05
PTPRA-201ENST00000216877 EFHC1Q5JVL4 640 aa15.39■□□□□ 0.05
PTPRA-201ENST00000216877 TBC1D9BQ66K14 1250 aa15.39■□□□□ 0.05
PTPRA-201ENST00000216877 TRMT1LQ7Z2T5 733 aaKnown RBP15.39■□□□□ 0.05
PTPRA-201ENST00000216877 PDSS2Q86YH6 399 aa15.39■□□□□ 0.05
PTPRA-201ENST00000216877 PPP4R1Q8TF05 950 aa15.39■□□□□ 0.05
PTPRA-201ENST00000216877 BHMT2Q9H2M3 363 aa15.39■□□□□ 0.05
PTPRA-201ENST00000216877 FAIMQ9NVQ4 179 aa15.39■□□□□ 0.05
PTPRA-201ENST00000216877 DDX43Q9NXZ2 648 aaKnown RBP15.39■□□□□ 0.05
PTPRA-201ENST00000216877 WHRNQ9P202 907 aa15.39■□□□□ 0.05
PTPRA-201ENST00000216877 KDM1AO60341 852 aa15.39■□□□□ 0.05
PTPRA-201ENST00000216877 KRT38O76015 456 aa15.39■□□□□ 0.05
PTPRA-201ENST00000216877 MT-ND3P03897 115 aa15.39■□□□□ 0.05
PTPRA-201ENST00000216877 TFAP2AP05549 437 aa15.39■□□□□ 0.05
PTPRA-201ENST00000216877 PPATQ06203 517 aa15.39■□□□□ 0.05
PTPRA-201ENST00000216877 NUP93Q8N1F7 819 aa15.39■□□□□ 0.05
PTPRA-201ENST00000216877 PTCD3Q96EY7 689 aaKnown RBP15.39■□□□□ 0.05
PTPRA-201ENST00000216877 SLX1AQ9BQ83 275 aa15.39■□□□□ 0.05
PTPRA-201ENST00000216877 TRPC7Q9HCX4 862 aa15.39■□□□□ 0.05
PTPRA-201ENST00000216877 AFDNP55196 1824 aaKnown RBP15.39■□□□□ 0.05
PTPRA-201ENST00000216877 ZMYM2Q9UBW7 1377 aa15.38■□□□□ 0.05
PTPRA-201ENST00000216877 DISP2A7MBM2 1401 aa15.38■□□□□ 0.05
PTPRA-201ENST00000216877 POTEB3A0JP26 581 aa15.38■□□□□ 0.05
PTPRA-201ENST00000216877 POTECB2RU33 542 aa15.38■□□□□ 0.05
PTPRA-201ENST00000216877 ATP2A1O14983 1001 aa15.38■□□□□ 0.05
PTPRA-201ENST00000216877 SLC37A4O43826 429 aa15.38■□□□□ 0.05
PTPRA-201ENST00000216877 SORBS2O94875 1100 aaKnown RBP15.38■□□□□ 0.05
PTPRA-201ENST00000216877 PLA2G4BP0C869 781 aa15.38■□□□□ 0.05
PTPRA-201ENST00000216877 ZBTB48P10074 688 aaPredicted RBP15.38■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms