RNA–Protein interactions for RNA: YDR330W

UBX5, Transcript of UBX domain-containing protein that interacts with Cdc48p, yeast

Gene UBX5, Length 1,503 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBX5	YDR330W	CTS2	Q06350	511 aa		3.18	□□□□□ -1.9
UBX5	YDR330W	NIP7	Q08962	181 aa	Known RBP	3.18	□□□□□ -1.9
UBX5	YDR330W	GRE1	Q08969	168 aa		3.18	□□□□□ -1.9
UBX5	YDR330W	ATP14	Q12349	124 aa		3.18	□□□□□ -1.9
UBX5	YDR330W	YPR117W	Q06116	2489 aa		3.17	□□□□□ -1.9
UBX5	YDR330W	CSF1	Q12150	2958 aa		3.17	□□□□□ -1.9
UBX5	YDR330W	MAG1	P22134	296 aa	Known RBP	3.17	□□□□□ -1.9
UBX5	YDR330W	ARO4	P32449	370 aa	Known RBP	3.17	□□□□□ -1.9
UBX5	YDR330W	SUA5	P32579	426 aa		3.17	□□□□□ -1.9
UBX5	YDR330W	FMT1	P32785	401 aa		3.17	□□□□□ -1.9
UBX5	YDR330W	PAN3	P36102	679 aa	Predicted RBP	3.17	□□□□□ -1.9
UBX5	YDR330W	UMP1	P38293	148 aa		3.17	□□□□□ -1.9
UBX5	YDR330W	TAD2	P47058	250 aa		3.17	□□□□□ -1.9
UBX5	YDR330W	BNS1	P50084	137 aa		3.17	□□□□□ -1.9
UBX5	YDR330W	BOR1	P53838	576 aa		3.17	□□□□□ -1.9
UBX5	YDR330W	RNH201	P53942	307 aa		3.17	□□□□□ -1.9
UBX5	YDR330W	YDR102C	Q03864	110 aa		3.17	□□□□□ -1.9
UBX5	YDR330W	YOR376W	Q08900	122 aa		3.17	□□□□□ -1.9
UBX5	YDR330W	FEX2	Q08991	375 aa		3.17	□□□□□ -1.9
UBX5	YDR330W	AKR2	Q12013	749 aa		3.17	□□□□□ -1.9
UBX5	YDR330W	MCT1	Q12283	360 aa		3.17	□□□□□ -1.9
UBX5	YDR330W	PRM4	Q12498	284 aa		3.17	□□□□□ -1.9
UBX5	YDR330W	YHR214C-E	Q8TGK0	99 aa		3.17	□□□□□ -1.9
UBX5	YDR330W	YOR032W-A	Q8TGS1	66 aa		3.17	□□□□□ -1.9
UBX5	YDR330W	BRR2	P32639	2163 aa	Known RBP	3.17	□□□□□ -1.9
UBX5	YDR330W	YHR214C-D	P0CX93	97 aa		3.16	□□□□□ -1.9
UBX5	YDR330W	DAL82	P21705	255 aa		3.16	□□□□□ -1.9
UBX5	YDR330W	TRR1	P29509	319 aa	Known RBP	3.16	□□□□□ -1.9
UBX5	YDR330W	EMP24	P32803	203 aa	Known RBP	3.16	□□□□□ -1.9
UBX5	YDR330W	KTI12	P34253	313 aa	Known RBP	3.16	□□□□□ -1.9
UBX5	YDR330W	SRY1	P36007	326 aa		3.16	□□□□□ -1.9
UBX5	YDR330W	YPC1	P38298	316 aa		3.16	□□□□□ -1.9
UBX5	YDR330W	OM14	P38325	134 aa		3.16	□□□□□ -1.9
UBX5	YDR330W	GRE3	P38715	327 aa	Known RBP RIP-Chip data	3.16	□□□□□ -1.9	not detected
UBX5	YDR330W	BMT5	P40493	336 aa		3.16	□□□□□ -1.9
UBX5	YDR330W	AGX1	P43567	385 aa		3.16	□□□□□ -1.9
UBX5	YDR330W	NRK1	P53915	240 aa		3.16	□□□□□ -1.9
UBX5	YDR330W	SUR7	P54003	302 aa		3.16	□□□□□ -1.9
UBX5	YDR330W	ANT1	Q06497	328 aa		3.16	□□□□□ -1.9
UBX5	YDR330W	SYM1	Q06563	197 aa		3.16	□□□□□ -1.9
UBX5	YDR330W	ATP16	Q12165	160 aa		3.16	□□□□□ -1.9
UBX5	YDR330W	UTP23	Q12339	254 aa	Known RBP	3.16	□□□□□ -1.9
UBX5	YDR330W	MED4	Q12343	284 aa		3.16	□□□□□ -1.9
UBX5	YDR330W	PET20	Q99373	253 aa		3.16	□□□□□ -1.9
UBX5	YDR330W	MDH2	P22133	377 aa		3.15	□□□□□ -1.9
UBX5	YDR330W	SEC22	P22214	214 aa		3.15	□□□□□ -1.9
UBX5	YDR330W	PCL1	P24867	279 aa		3.15	□□□□□ -1.9
UBX5	YDR330W	IFM1	P25038	676 aa		3.15	□□□□□ -1.9
UBX5	YDR330W	RFA3	P26755	122 aa	Known RBP	3.15	□□□□□ -1.9
UBX5	YDR330W	RPL16B	P26785	198 aa	Known RBP	3.15	□□□□□ -1.9
UBX5	YDR330W	AGA2	P32781	87 aa		3.15	□□□□□ -1.9
UBX5	YDR330W	POP8	P38208	133 aa		3.15	□□□□□ -1.9
UBX5	YDR330W	BFR1	P38934	470 aa	Known RBP RIP-Chip data	3.15	□□□□□ -1.9	not detected
UBX5	YDR330W	OXA1	P39952	402 aa		3.15	□□□□□ -1.9
UBX5	YDR330W	GLR1	P41921	483 aa	Known RBP	3.15	□□□□□ -1.9
UBX5	YDR330W	YJR111C	P47148	283 aa	Known RBP	3.15	□□□□□ -1.9
UBX5	YDR330W	NIF3	P53081	288 aa		3.15	□□□□□ -1.9
UBX5	YDR330W	YGL159W	P53110	370 aa		3.15	□□□□□ -1.9
UBX5	YDR330W	HHT1	P61830	136 aa		3.15	□□□□□ -1.9
UBX5	YDR330W	YPL077C	Q02831	240 aa		3.15	□□□□□ -1.9
UBX5	YDR330W	SDC1	Q03323	175 aa		3.15	□□□□□ -1.9
UBX5	YDR330W	YML018C	Q03730	393 aa		3.15	□□□□□ -1.9
UBX5	YDR330W	YDR248C	Q03786	193 aa		3.15	□□□□□ -1.9
UBX5	YDR330W	TFC7	Q12415	435 aa		3.15	□□□□□ -1.9
UBX5	YDR330W	COX5B	P00425	151 aa		3.14	□□□□□ -1.91
UBX5	YDR330W	TPI1	P00942	248 aa	Known RBP	3.14	□□□□□ -1.91
UBX5	YDR330W	REP2	P03872	296 aa		3.14	□□□□□ -1.91
UBX5	YDR330W	CDC36	P06100	191 aa	Predicted RBP	3.14	□□□□□ -1.91
UBX5	YDR330W	RPL31A	P0C2H8	113 aa	Known RBP	3.14	□□□□□ -1.91
UBX5	YDR330W	FUS3	P16892	353 aa	Known RBP	3.14	□□□□□ -1.91
UBX5	YDR330W	GCV3	P39726	170 aa	Predicted RBP	3.14	□□□□□ -1.91
UBX5	YDR330W	DIG2	Q03373	323 aa	Known RBP	3.14	□□□□□ -1.91
UBX5	YDR330W	MIX14	Q04341	121 aa		3.14	□□□□□ -1.91
UBX5	YDR330W	NOC4	Q06512	552 aa	Predicted RBP	3.14	□□□□□ -1.91
UBX5	YDR330W	MRX9	Q07349	420 aa	Known RBP	3.14	□□□□□ -1.91
UBX5	YDR330W	FLO9	P39712	1322 aa		3.14	□□□□□ -1.91
UBX5	YDR330W	YBL010C	P32788	280 aa		3.14	□□□□□ -1.91
UBX5	YDR330W	PDC2	P32896	925 aa		3.14	□□□□□ -1.91
UBX5	YDR330W	CBT1	P36038	271 aa	Predicted RBP	3.14	□□□□□ -1.91
UBX5	YDR330W	ASP1	P38986	381 aa	Predicted RBP	3.14	□□□□□ -1.91
UBX5	YDR330W	YIA6	P40556	373 aa		3.14	□□□□□ -1.91
UBX5	YDR330W	YPI1	P43587	155 aa		3.14	□□□□□ -1.91
UBX5	YDR330W	ECO1	P43605	281 aa		3.14	□□□□□ -1.91
UBX5	YDR330W	ADO1	P47143	340 aa	Known RBP	3.14	□□□□□ -1.91
UBX5	YDR330W	ALG9	P53868	555 aa	Known RBP	3.14	□□□□□ -1.91
UBX5	YDR330W	YDR209C	Q03480	137 aa		3.14	□□□□□ -1.91
UBX5	YDR330W	SCP1	Q08873	200 aa		3.14	□□□□□ -1.91
UBX5	YDR330W	YHR213W-A	Q8TGT4	77 aa		3.14	□□□□□ -1.91
UBX5	YDR330W	SAL1	D6W196	494 aa		3.13	□□□□□ -1.91
UBX5	YDR330W	TDH3	P00359	332 aa	Known RBP RIP-Chip data	3.13	□□□□□ -1.91	not detected
UBX5	YDR330W	CDC28	P00546	298 aa	Known RBP	3.13	□□□□□ -1.91
UBX5	YDR330W	YFR010W-A	P0C5N0	62 aa		3.13	□□□□□ -1.91
UBX5	YDR330W	SPS100	P13130	326 aa		3.13	□□□□□ -1.91
UBX5	YDR330W	RPL30	P14120	105 aa	Known RBP	3.13	□□□□□ -1.91
UBX5	YDR330W	YBR096W	P38256	230 aa		3.13	□□□□□ -1.91
UBX5	YDR330W	COS8	P38723	381 aa		3.13	□□□□□ -1.91
UBX5	YDR330W	PEX22	P39718	180 aa		3.13	□□□□□ -1.91
UBX5	YDR330W	SLM1	P40485	686 aa		3.13	□□□□□ -1.91
UBX5	YDR330W	YIR035C	P40579	254 aa		3.13	□□□□□ -1.91
UBX5	YDR330W	YJL016W	P47072	561 aa		3.13	□□□□□ -1.91

Retrieved 100 of 5,963 RNA–protein pairs in 40.3 ms