RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 RIPOR3Q96MK2 946 aa19.7■□□□□ 0.74
CLN3-259ENST00000637551 MTMR12Q9C0I1 747 aa19.7■□□□□ 0.74
CLN3-259ENST00000637551 CLSTN2Q9H4D0 955 aa19.7■□□□□ 0.74
CLN3-259ENST00000637551 VRTNQ9H8Y1 702 aa19.7■□□□□ 0.74
CLN3-259ENST00000637551 LMBRD1Q9NUN5 540 aa19.7■□□□□ 0.74
CLN3-259ENST00000637551 MAN1B1Q9UKM7 699 aa19.7■□□□□ 0.74
CLN3-259ENST00000637551 DENND4AQ7Z401 1863 aa19.7■□□□□ 0.74
CLN3-259ENST00000637551 BICDL2A1A5D9 508 aa19.69■□□□□ 0.74
CLN3-259ENST00000637551 H3BQ06 376 aaPredicted RBP19.69■□□□□ 0.74
CLN3-259ENST00000637551 CETN3O15182 167 aa19.69■□□□□ 0.74
CLN3-259ENST00000637551 TGM5O43548 720 aa19.69■□□□□ 0.74
CLN3-259ENST00000637551 ABLIM3O94929 683 aa19.69■□□□□ 0.74
CLN3-259ENST00000637551 ITGB3P05106 788 aa19.69■□□□□ 0.74
CLN3-259ENST00000637551 EPCAMP16422 314 aa19.69■□□□□ 0.74
CLN3-259ENST00000637551 TNNI1P19237 187 aa19.69■□□□□ 0.74
CLN3-259ENST00000637551 CCNE1P24864 410 aa19.69■□□□□ 0.74
CLN3-259ENST00000637551 ADAM9Q13443 819 aa19.69■□□□□ 0.74
CLN3-259ENST00000637551 PRSS55Q6UWB4 352 aaPredicted RBP19.69■□□□□ 0.74
CLN3-259ENST00000637551 DSTYKQ6XUX3 929 aa19.69■□□□□ 0.74
CLN3-259ENST00000637551 CCDC149Q6ZUS6 474 aa19.69■□□□□ 0.74
CLN3-259ENST00000637551 TOP6BLQ8N6T0 577 aa19.69■□□□□ 0.74
CLN3-259ENST00000637551 BORCS6Q96GS4 357 aa19.69■□□□□ 0.74
CLN3-259ENST00000637551 B3GALT6Q96L58 329 aa19.69■□□□□ 0.74
CLN3-259ENST00000637551 SIX4Q9UIU6 781 aa19.69■□□□□ 0.74
CLN3-259ENST00000637551 POLR2BP30876 1174 aaKnown RBP19.68■□□□□ 0.74
CLN3-259ENST00000637551 GTF2H1P32780 548 aa19.68■□□□□ 0.74
CLN3-259ENST00000637551 OVOS1Q6IE37 1185 aa19.68■□□□□ 0.74
CLN3-259ENST00000637551 EP400NLQ6ZTU2 488 aa19.68■□□□□ 0.74
CLN3-259ENST00000637551 TRAPPC11Q7Z392 1133 aa19.68■□□□□ 0.74
CLN3-259ENST00000637551 LIMS2Q7Z4I7 341 aa19.68■□□□□ 0.74
CLN3-259ENST00000637551 METTL23Q86XA0 190 aa19.68■□□□□ 0.74
CLN3-259ENST00000637551 CSGALNACT2Q8N6G5 542 aa19.68■□□□□ 0.74
CLN3-259ENST00000637551 FAXDC2Q96IV6 333 aa19.68■□□□□ 0.74
CLN3-259ENST00000637551 GZF1Q9H116 711 aaPredicted RBP19.68■□□□□ 0.74
CLN3-259ENST00000637551 MAN1C1Q9NR34 630 aa19.68■□□□□ 0.74
CLN3-259ENST00000637551 CDY1Q9Y6F8 540 aa19.68■□□□□ 0.74
CLN3-259ENST00000637551 WDFY4Q6ZS81 3184 aa19.68■□□□□ 0.74
CLN3-259ENST00000637551 STX10O60499 249 aa19.67■□□□□ 0.74
CLN3-259ENST00000637551 MBD3O95983 291 aa19.67■□□□□ 0.74
CLN3-259ENST00000637551 DLATP10515 647 aaKnown RBP19.67■□□□□ 0.74
CLN3-259ENST00000637551 ATF2P15336 505 aa19.67■□□□□ 0.74
CLN3-259ENST00000637551 OR1D2P34982 312 aa19.67■□□□□ 0.74
CLN3-259ENST00000637551 GUCY2FP51841 1108 aa19.67■□□□□ 0.74
CLN3-259ENST00000637551 ROR1Q01973 937 aa19.67■□□□□ 0.74
CLN3-259ENST00000637551 CBX2Q14781 532 aaPredicted RBP19.67■□□□□ 0.74
CLN3-259ENST00000637551 CTXN3Q4LDR2 81 aa19.67■□□□□ 0.74
CLN3-259ENST00000637551 CT47A1Q5JQC4 288 aaPredicted RBP19.67■□□□□ 0.74
CLN3-259ENST00000637551 LIN9Q5TKA1 542 aa19.67■□□□□ 0.74
CLN3-259ENST00000637551 GPR149Q86SP6 731 aa19.67■□□□□ 0.74
CLN3-259ENST00000637551 TCEAL8Q8IYN2 117 aa19.67■□□□□ 0.74
CLN3-259ENST00000637551 KREMEN2Q8NCW0 462 aa19.67■□□□□ 0.74
CLN3-259ENST00000637551 OR5B17Q8NGF7 314 aa19.67■□□□□ 0.74
CLN3-259ENST00000637551 NOC3LQ8WTT2 800 aaKnown RBP19.67■□□□□ 0.74
CLN3-259ENST00000637551 C2orf15Q8WU43 125 aaKnown RBP19.67■□□□□ 0.74
CLN3-259ENST00000637551 TAF4BQ92750 862 aa19.67■□□□□ 0.74
CLN3-259ENST00000637551 SYAP1Q96A49 352 aaPredicted RBP19.67■□□□□ 0.74
CLN3-259ENST00000637551 CEP63Q96MT8 703 aa19.67■□□□□ 0.74
CLN3-259ENST00000637551 FAM124BQ9H5Z6 455 aaPredicted RBP19.67■□□□□ 0.74
CLN3-259ENST00000637551 AFF4Q9UHB7 1163 aaKnown RBP19.67■□□□□ 0.74
CLN3-259ENST00000637551 FBXL5Q9UKA1 691 aa19.67■□□□□ 0.74
CLN3-259ENST00000637551 AGAP1Q9UPQ3 857 aa19.67■□□□□ 0.74
CLN3-259ENST00000637551 USP15Q9Y4E8 981 aaPredicted RBP19.67■□□□□ 0.74
CLN3-259ENST00000637551 PTPRJQ12913 1337 aa19.67■□□□□ 0.74
CLN3-259ENST00000637551 I3L4J1 428 aa19.66■□□□□ 0.74
CLN3-259ENST00000637551 CYB561D2O14569 222 aa19.66■□□□□ 0.74
CLN3-259ENST00000637551 PPEF2O14830 753 aa19.66■□□□□ 0.74
CLN3-259ENST00000637551 SPTLC1O15269 473 aa19.66■□□□□ 0.74
CLN3-259ENST00000637551 ZMYND10O75800 440 aa19.66■□□□□ 0.74
CLN3-259ENST00000637551 AKAP3O75969 853 aa19.66■□□□□ 0.74
CLN3-259ENST00000637551 EPB41P11171 864 aaKnown RBP19.66■□□□□ 0.74
CLN3-259ENST00000637551 KRT13P13646 458 aa19.66■□□□□ 0.74
CLN3-259ENST00000637551 PRKCSHP14314 528 aaPredicted RBP19.66■□□□□ 0.74
CLN3-259ENST00000637551 IGFBP6P24592 240 aaPredicted RBP19.66■□□□□ 0.74
CLN3-259ENST00000637551 NHLH1Q02575 133 aa19.66■□□□□ 0.74
CLN3-259ENST00000637551 BFSP1Q12934 665 aa19.66■□□□□ 0.74
CLN3-259ENST00000637551 CEP135Q66GS9 1140 aa19.66■□□□□ 0.74
CLN3-259ENST00000637551 LLGL2Q6P1M3 1020 aa19.66■□□□□ 0.74
CLN3-259ENST00000637551 ADHFE1Q8IWW8 467 aa19.66■□□□□ 0.74
CLN3-259ENST00000637551 FAM186BQ8IYM0 893 aa19.66■□□□□ 0.74
CLN3-259ENST00000637551 RDH13Q8NBN7 331 aa19.66■□□□□ 0.74
CLN3-259ENST00000637551 CCDC127Q96BQ5 260 aa19.66■□□□□ 0.74
CLN3-259ENST00000637551 NUP62CLQ9H1M0 184 aa19.66■□□□□ 0.74
CLN3-259ENST00000637551 MAPK8IP1Q9UQF2 711 aa19.66■□□□□ 0.74
CLN3-259ENST00000637551 USTQ9Y2C2 406 aa19.66■□□□□ 0.74
CLN3-259ENST00000637551 C2orf16Q68DN1 1984 aa19.65■□□□□ 0.74
CLN3-259ENST00000637551 LRRIQ3A6PVS8 624 aaPredicted RBP19.65■□□□□ 0.74
CLN3-259ENST00000637551 HUS1O60921 280 aa19.65■□□□□ 0.74
CLN3-259ENST00000637551 LHX1P48742 406 aa19.65■□□□□ 0.74
CLN3-259ENST00000637551 VAMP7P51809 220 aa19.65■□□□□ 0.74
CLN3-259ENST00000637551 GPR17Q13304 367 aa19.65■□□□□ 0.74
CLN3-259ENST00000637551 ZACNQ401N2 412 aa19.65■□□□□ 0.74
CLN3-259ENST00000637551 ATAT1Q5SQI0 421 aa19.65■□□□□ 0.74
CLN3-259ENST00000637551 SMYD4Q8IYR2 804 aaPredicted RBP19.65■□□□□ 0.74
CLN3-259ENST00000637551 THEM5Q8N1Q8 247 aa19.65■□□□□ 0.74
CLN3-259ENST00000637551 MLKLQ8NB16 471 aa19.65■□□□□ 0.74
CLN3-259ENST00000637551 HPDLQ96IR7 371 aa19.65■□□□□ 0.74
CLN3-259ENST00000637551 PHF7Q9BWX1 381 aaPredicted RBP19.65■□□□□ 0.74
CLN3-259ENST00000637551 METTL14Q9HCE5 456 aaKnown RBP19.65■□□□□ 0.74
CLN3-259ENST00000637551 C19orf67A6NJJ6 358 aa19.64■□□□□ 0.73
CLN3-259ENST00000637551 PPP1R3GB7ZBB8 358 aa19.64■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms