RNA–Protein interactions for RNA: ENST00000635973.1

CLN3-243, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-243ENST00000635973 IGSF9Q9P2J2 1179 aa19.57■□□□□ 0.72
CLN3-243ENST00000635973 CTNND2Q9UQB3 1225 aa19.57■□□□□ 0.72
CLN3-243ENST00000635973 NUB1Q9Y5A7 615 aa19.57■□□□□ 0.72
CLN3-243ENST00000635973 ANK1P16157 1881 aa19.56■□□□□ 0.72
CLN3-243ENST00000635973 CLUHO75153 1309 aa19.56■□□□□ 0.72
CLN3-243ENST00000635973 TRAPPC3O43617 180 aa19.56■□□□□ 0.72
CLN3-243ENST00000635973 PDGFBP01127 241 aaPredicted RBP19.56■□□□□ 0.72
CLN3-243ENST00000635973 TMEM191BP0C7N4 346 aa19.56■□□□□ 0.72
CLN3-243ENST00000635973 DLATP10515 647 aaKnown RBP19.56■□□□□ 0.72
CLN3-243ENST00000635973 WNT7BP56706 349 aa19.56■□□□□ 0.72
CLN3-243ENST00000635973 MYBPC2Q14324 1141 aa19.56■□□□□ 0.72
CLN3-243ENST00000635973 ZBTB6Q15916 424 aa19.56■□□□□ 0.72
CLN3-243ENST00000635973 EDRF1Q3B7T1 1238 aa19.56■□□□□ 0.72
CLN3-243ENST00000635973 SPATA1Q5VX52 437 aa19.56■□□□□ 0.72
CLN3-243ENST00000635973 EFCAB13Q8IY85 973 aa19.56■□□□□ 0.72
CLN3-243ENST00000635973 DHTKD1Q96HY7 919 aaPredicted RBP19.56■□□□□ 0.72
CLN3-243ENST00000635973 ANKRD36BP1Q96IX9 119 aa19.56■□□□□ 0.72
CLN3-243ENST00000635973 FBXL21Q9UKT6 434 aa19.56■□□□□ 0.72
CLN3-243ENST00000635973 TMEM189-UBE2V1I3L0A0 370 aa19.55■□□□□ 0.72
CLN3-243ENST00000635973 TNNI1P19237 187 aa19.55■□□□□ 0.72
CLN3-243ENST00000635973 PTMSP20962 102 aa19.55■□□□□ 0.72
CLN3-243ENST00000635973 BMP6P22004 513 aa19.55■□□□□ 0.72
CLN3-243ENST00000635973 LRPAP1P30533 357 aa19.55■□□□□ 0.72
CLN3-243ENST00000635973 LRRC63Q05C16 580 aa19.55■□□□□ 0.72
CLN3-243ENST00000635973 ADAM9Q13443 819 aa19.55■□□□□ 0.72
CLN3-243ENST00000635973 NFIL3Q16649 462 aa19.55■□□□□ 0.72
CLN3-243ENST00000635973 ZCWPW2Q504Y3 356 aa19.55■□□□□ 0.72
CLN3-243ENST00000635973 LMBRD2Q68DH5 695 aaPredicted RBP19.55■□□□□ 0.72
CLN3-243ENST00000635973 PDZRN4Q6ZMN7 1036 aaPredicted RBP19.55■□□□□ 0.72
CLN3-243ENST00000635973 TMEM130Q8N3G9 435 aa19.55■□□□□ 0.72
CLN3-243ENST00000635973 NELFBQ8WX92 580 aa19.55■□□□□ 0.72
CLN3-243ENST00000635973 PIK3R5Q8WYR1 880 aa19.55■□□□□ 0.72
CLN3-243ENST00000635973 PRKD2Q9BZL6 878 aa19.55■□□□□ 0.72
CLN3-243ENST00000635973 KCNK12Q9HB15 430 aa19.55■□□□□ 0.72
CLN3-243ENST00000635973 DMAC2Q9NW81 257 aa19.55■□□□□ 0.72
CLN3-243ENST00000635973 DPP3Q9NY33 737 aa19.55■□□□□ 0.72
CLN3-243ENST00000635973 R3HCC1Q9Y3T6 440 aaKnown RBP19.55■□□□□ 0.72
CLN3-243ENST00000635973 BICDL2A1A5D9 508 aa19.54■□□□□ 0.72
CLN3-243ENST00000635973 TRIM49BA6NDI0 452 aa19.54■□□□□ 0.72
CLN3-243ENST00000635973 CETN3O15182 167 aa19.54■□□□□ 0.72
CLN3-243ENST00000635973 ZMYND10O75800 440 aa19.54■□□□□ 0.72
CLN3-243ENST00000635973 TNNC2P02585 160 aa19.54■□□□□ 0.72
CLN3-243ENST00000635973 CD44P16070 742 aaKnown RBP19.54■□□□□ 0.72
CLN3-243ENST00000635973 CCNE1P24864 410 aa19.54■□□□□ 0.72
CLN3-243ENST00000635973 NUBP1P53384 320 aa19.54■□□□□ 0.72
CLN3-243ENST00000635973 PAK1Q13153 545 aa19.54■□□□□ 0.72
CLN3-243ENST00000635973 PSMD6Q15008 389 aa19.54■□□□□ 0.72
CLN3-243ENST00000635973 PPM1LQ5SGD2 360 aa19.54■□□□□ 0.72
CLN3-243ENST00000635973 CCDC183Q5T5S1 534 aa19.54■□□□□ 0.72
CLN3-243ENST00000635973 CENPPQ6IPU0 288 aa19.54■□□□□ 0.72
CLN3-243ENST00000635973 LILRA6Q6PI73 481 aa19.54■□□□□ 0.72
CLN3-243ENST00000635973 WDR49Q8IV35 697 aa19.54■□□□□ 0.72
CLN3-243ENST00000635973 C3orf58Q8NDZ4 430 aa19.54■□□□□ 0.72
CLN3-243ENST00000635973 LNX1Q8TBB1 728 aaPredicted RBP19.54■□□□□ 0.72
CLN3-243ENST00000635973 TMEM174Q8WUU8 243 aa19.54■□□□□ 0.72
CLN3-243ENST00000635973 PHOX2BQ99453 314 aa19.54■□□□□ 0.72
CLN3-243ENST00000635973 CGRRF1Q99675 332 aa19.54■□□□□ 0.72
CLN3-243ENST00000635973 MTMR12Q9C0I1 747 aa19.54■□□□□ 0.72
CLN3-243ENST00000635973 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP19.54■□□□□ 0.72
CLN3-243ENST00000635973 VWA8A3KMH1 1905 aa19.54■□□□□ 0.72
CLN3-243ENST00000635973 ZDBF2Q9HCK1 2354 aa19.54■□□□□ 0.72
CLN3-243ENST00000635973 PPP1R3GB7ZBB8 358 aa19.53■□□□□ 0.72
CLN3-243ENST00000635973 EPB41P11171 864 aaKnown RBP19.53■□□□□ 0.72
CLN3-243ENST00000635973 KRT13P13646 458 aa19.53■□□□□ 0.72
CLN3-243ENST00000635973 CASP4P49662 377 aa19.53■□□□□ 0.72
CLN3-243ENST00000635973 PMS1P54277 932 aaKnown RBP19.53■□□□□ 0.72
CLN3-243ENST00000635973 C9orf57Q5W0N0 161 aa19.53■□□□□ 0.72
CLN3-243ENST00000635973 ANKRD40Q6AI12 368 aa19.53■□□□□ 0.72
CLN3-243ENST00000635973 GET4Q7L5D6 327 aaPredicted RBP19.53■□□□□ 0.72
CLN3-243ENST00000635973 USP37Q86T82 979 aa19.53■□□□□ 0.72
CLN3-243ENST00000635973 FAM186BQ8IYM0 893 aa19.53■□□□□ 0.72
CLN3-243ENST00000635973 FLCNQ8NFG4 579 aa19.53■□□□□ 0.72
CLN3-243ENST00000635973 SYAP1Q96A49 352 aaPredicted RBP19.53■□□□□ 0.72
CLN3-243ENST00000635973 ZNF707Q96C28 371 aaPredicted RBP19.53■□□□□ 0.72
CLN3-243ENST00000635973 CLSTN3Q9BQT9 956 aa19.53■□□□□ 0.72
CLN3-243ENST00000635973 INTS13Q9NVM9 706 aa19.53■□□□□ 0.72
CLN3-243ENST00000635973 POLIQ9UNA4 740 aa19.53■□□□□ 0.72
CLN3-243ENST00000635973 I3L4J1 428 aa19.52■□□□□ 0.72
CLN3-243ENST00000635973 AKAP3O75969 853 aa19.52■□□□□ 0.72
CLN3-243ENST00000635973 ITGB3P05106 788 aa19.52■□□□□ 0.72
CLN3-243ENST00000635973 KRT19P08727 400 aa19.52■□□□□ 0.72
CLN3-243ENST00000635973 RFX1P22670 979 aa19.52■□□□□ 0.72
CLN3-243ENST00000635973 PSMC2P35998 433 aaKnown RBP19.52■□□□□ 0.72
CLN3-243ENST00000635973 BRCC3P46736 316 aa19.52■□□□□ 0.72
CLN3-243ENST00000635973 FKBP3Q00688 224 aaKnown RBP19.52■□□□□ 0.72
CLN3-243ENST00000635973 DUOXA2Q1HG44 320 aa19.52■□□□□ 0.72
CLN3-243ENST00000635973 ASTLQ6HA08 431 aaPredicted RBP19.52■□□□□ 0.72
CLN3-243ENST00000635973 MLKLQ8NB16 471 aa19.52■□□□□ 0.72
CLN3-243ENST00000635973 ATOH1Q92858 354 aaPredicted RBP19.52■□□□□ 0.72
CLN3-243ENST00000635973 NXPE3Q969Y0 559 aa19.52■□□□□ 0.72
CLN3-243ENST00000635973 EEF2KMTQ96G04 330 aa19.52■□□□□ 0.72
CLN3-243ENST00000635973 FAM84AQ96KN4 292 aa19.52■□□□□ 0.72
CLN3-243ENST00000635973 ZNF560Q96MR9 790 aa19.52■□□□□ 0.72
CLN3-243ENST00000635973 EPS15L1Q9UBC2 864 aa19.52■□□□□ 0.72
CLN3-243ENST00000635973 DACH1Q9UI36 760 aa19.52■□□□□ 0.72
CLN3-243ENST00000635973 FBXW11Q9UKB1 542 aa19.52■□□□□ 0.72
CLN3-243ENST00000635973 ITGA11Q9UKX5 1188 aa19.52■□□□□ 0.72
CLN3-243ENST00000635973 DUSP12Q9UNI6 340 aa19.52■□□□□ 0.72
CLN3-243ENST00000635973 PTPRJQ12913 1337 aa19.51■□□□□ 0.71
CLN3-243ENST00000635973 STK25O00506 426 aa19.51■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms