RNA–Protein interactions for RNA: ENST00000635958.1

CLN3-242, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,837 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-242ENST00000635958 FERP16591 822 aa15.14■□□□□ 0.01
CLN3-242ENST00000635958 ACO1P21399 889 aaKnown RBP15.14■□□□□ 0.01
CLN3-242ENST00000635958 RPL9P32969 192 aaKnown RBP15.14■□□□□ 0.01
CLN3-242ENST00000635958 PNPLA4P41247 253 aa15.14■□□□□ 0.01
CLN3-242ENST00000635958 MYO1EQ12965 1108 aa15.14■□□□□ 0.01
CLN3-242ENST00000635958 ZNF667Q5HYK9 610 aa15.14■□□□□ 0.01
CLN3-242ENST00000635958 UBR7Q8N806 425 aa15.14■□□□□ 0.01
CLN3-242ENST00000635958 CHP1Q99653 195 aa15.14■□□□□ 0.01
CLN3-242ENST00000635958 BCO2Q9BYV7 579 aa15.14■□□□□ 0.01
CLN3-242ENST00000635958 UBXN6Q9BZV1 441 aa15.14■□□□□ 0.01
CLN3-242ENST00000635958 BZW2Q9Y6E2 419 aaKnown RBP15.14■□□□□ 0.01
CLN3-242ENST00000635958 EFCAB14O75071 495 aa15.13■□□□□ 0.01
CLN3-242ENST00000635958 SERPING1P05155 500 aa15.13■□□□□ 0.01
CLN3-242ENST00000635958 CCDC172P0C7W6 258 aa15.13■□□□□ 0.01
CLN3-242ENST00000635958 ASPAP45381 313 aa15.13■□□□□ 0.01
CLN3-242ENST00000635958 PLA2G4AP47712 749 aa15.13■□□□□ 0.01
CLN3-242ENST00000635958 WDR72Q3MJ13 1102 aa15.13■□□□□ 0.01
CLN3-242ENST00000635958 NOMO2Q5JPE7 1267 aa15.13■□□□□ 0.01
CLN3-242ENST00000635958 NPAS4Q8IUM7 802 aa15.13■□□□□ 0.01
CLN3-242ENST00000635958 TXLNBQ8N3L3 684 aa15.13■□□□□ 0.01
CLN3-242ENST00000635958 CYP3A43Q9HB55 503 aa15.13■□□□□ 0.01
CLN3-242ENST00000635958 ARHGAP20Q9P2F6 1191 aa15.13■□□□□ 0.01
CLN3-242ENST00000635958 SCN1AP35498 2009 aa15.13■□□□□ 0.01
CLN3-242ENST00000635958 MICAL3Q7RTP6 2002 aa15.13■□□□□ 0.01
CLN3-242ENST00000635958 SSU72P8A0A1W2PR75 194 aa15.13■□□□□ 0.01
CLN3-242ENST00000635958 PPEF2O14830 753 aa15.13■□□□□ 0.01
CLN3-242ENST00000635958 HOXA2O43364 376 aa15.13■□□□□ 0.01
CLN3-242ENST00000635958 P4HA1P13674 534 aa15.13■□□□□ 0.01
CLN3-242ENST00000635958 MAPK8IP2Q13387 824 aaPredicted RBP15.13■□□□□ 0.01
CLN3-242ENST00000635958 TUSC3Q13454 348 aa15.13■□□□□ 0.01
CLN3-242ENST00000635958 ASIC2Q16515 512 aa15.13■□□□□ 0.01
CLN3-242ENST00000635958 DDX27Q96GQ7 796 aaKnown RBP15.13■□□□□ 0.01
CLN3-242ENST00000635958 GOLGA2P5Q9HBQ8 144 aa15.13■□□□□ 0.01
CLN3-242ENST00000635958 IL23AQ9NPF7 189 aa15.13■□□□□ 0.01
CLN3-242ENST00000635958 GDAP2Q9NXN4 497 aa15.13■□□□□ 0.01
CLN3-242ENST00000635958 PRKAG2Q9UGJ0 569 aa15.13■□□□□ 0.01
CLN3-242ENST00000635958 EVI5O60447 810 aa15.12■□□□□ 0.01
CLN3-242ENST00000635958 ERLIN1O75477 346 aa15.12■□□□□ 0.01
CLN3-242ENST00000635958 POMCP01189 267 aa15.12■□□□□ 0.01
CLN3-242ENST00000635958 FGFR1P11362 822 aa15.12■□□□□ 0.01
CLN3-242ENST00000635958 PAX3P23760 479 aa15.12■□□□□ 0.01
CLN3-242ENST00000635958 DSC1Q08554 894 aa15.12■□□□□ 0.01
CLN3-242ENST00000635958 CC2D1AQ6P1N0 951 aaPredicted RBP15.12■□□□□ 0.01
CLN3-242ENST00000635958 LIMS2Q7Z4I7 341 aa15.12■□□□□ 0.01
CLN3-242ENST00000635958 CCDC170Q8IYT3 715 aa15.12■□□□□ 0.01
CLN3-242ENST00000635958 URGCPQ8TCY9 931 aa15.12■□□□□ 0.01
CLN3-242ENST00000635958 ZNF560Q96MR9 790 aa15.12■□□□□ 0.01
CLN3-242ENST00000635958 UROC1Q96N76 676 aa15.12■□□□□ 0.01
CLN3-242ENST00000635958 CASD1Q96PB1 797 aa15.12■□□□□ 0.01
CLN3-242ENST00000635958 HTATIP2Q9BUP3 242 aa15.12■□□□□ 0.01
CLN3-242ENST00000635958 LRFN2Q9ULH4 789 aa15.12■□□□□ 0.01
CLN3-242ENST00000635958 GFPT2O94808 682 aa15.11■□□□□ 0.01
CLN3-242ENST00000635958 BAIAP3O94812 1187 aa15.11■□□□□ 0.01
CLN3-242ENST00000635958 FAM163BP0C2L3 166 aa15.11■□□□□ 0.01
CLN3-242ENST00000635958 TAF6P49848 677 aa15.11■□□□□ 0.01
CLN3-242ENST00000635958 LILRA4P59901 499 aa15.11■□□□□ 0.01
CLN3-242ENST00000635958 KLHL30Q0D2K2 578 aa15.11■□□□□ 0.01
CLN3-242ENST00000635958 UPP1Q16831 310 aa15.11■□□□□ 0.01
CLN3-242ENST00000635958 ASTE1Q2TB18 679 aaPredicted RBP15.11■□□□□ 0.01
CLN3-242ENST00000635958 LIN28BQ6ZN17 250 aaKnown RBP eCLIP15.11■□□□□ 0.01
CLN3-242ENST00000635958 NHEJ1Q9H9Q4 299 aaPredicted RBP15.11■□□□□ 0.01
CLN3-242ENST00000635958 PSD3Q9NYI0 1048 aa15.11■□□□□ 0.01
CLN3-242ENST00000635958 NXF1Q9UBU9 619 aaKnown RBP15.11■□□□□ 0.01
CLN3-242ENST00000635958 CDC23Q9UJX2 597 aa15.11■□□□□ 0.01
CLN3-242ENST00000635958 POLIQ9UNA4 740 aa15.11■□□□□ 0.01
CLN3-242ENST00000635958 INPP5FQ9Y2H2 1132 aa15.11■□□□□ 0.01
CLN3-242ENST00000635958 ADGRG1Q9Y653 693 aa15.11■□□□□ 0.01
CLN3-242ENST00000635958 LTBP2Q14767 1821 aa15.11■□□□□ 0.01
CLN3-242ENST00000635958 TDRD15B5MCY1 1934 aaKnown RBP15.11■□□□□ 0.01
CLN3-242ENST00000635958 SOWAHDA6NJG2 315 aa15.1■□□□□ 0.01
CLN3-242ENST00000635958 KPNA7A9QM74 516 aa15.1■□□□□ 0.01
CLN3-242ENST00000635958 SPTLC1O15269 473 aa15.1■□□□□ 0.01
CLN3-242ENST00000635958 IBSPP21815 317 aaPredicted RBP15.1■□□□□ 0.01
CLN3-242ENST00000635958 ANXA13P27216 316 aa15.1■□□□□ 0.01
CLN3-242ENST00000635958 ZNF132P52740 706 aa15.1■□□□□ 0.01
CLN3-242ENST00000635958 YWHAEP62258 255 aaKnown RBP15.1■□□□□ 0.01
CLN3-242ENST00000635958 PPIGQ13427 754 aaKnown RBP eCLIP15.1■□□□□ 0.016e-7■■□□□ 11.8
CLN3-242ENST00000635958 SV2CQ496J9 727 aa15.1■□□□□ 0.01
CLN3-242ENST00000635958 RAD9BQ6WBX8 426 aa15.1■□□□□ 0.01
CLN3-242ENST00000635958 C16orf59Q7L2K0 433 aa15.1■□□□□ 0.01
CLN3-242ENST00000635958 TTC39CQ8N584 583 aa15.1■□□□□ 0.01
CLN3-242ENST00000635958 TOP1MTQ969P6 601 aa15.1■□□□□ 0.01
CLN3-242ENST00000635958 SYT11Q9BT88 431 aa15.1■□□□□ 0.01
CLN3-242ENST00000635958 TSPYL1Q9H0U9 437 aa15.1■□□□□ 0.01
CLN3-242ENST00000635958 HAUS4Q9H6D7 363 aa15.1■□□□□ 0.01
CLN3-242ENST00000635958 CISHQ9NSE2 258 aa15.1■□□□□ 0.01
CLN3-242ENST00000635958 TBC1D13Q9NVG8 400 aa15.1■□□□□ 0.01
CLN3-242ENST00000635958 PODXLO00592 558 aa15.1■□□□□ 0.01
CLN3-242ENST00000635958 CYP26A1O43174 497 aa15.1■□□□□ 0.01
CLN3-242ENST00000635958 PLEKP08567 350 aaPredicted RBP15.1■□□□□ 0.01
CLN3-242ENST00000635958 WEE2P0C1S8 567 aa15.1■□□□□ 0.01
CLN3-242ENST00000635958 AARSP49588 968 aaKnown RBP eCLIP15.1■□□□□ 0.01
CLN3-242ENST00000635958 CLCNKBP51801 687 aa15.1■□□□□ 0.01
CLN3-242ENST00000635958 BPIFB4P59827 614 aa15.1■□□□□ 0.01
CLN3-242ENST00000635958 TNNC1P63316 161 aa15.1■□□□□ 0.01
CLN3-242ENST00000635958 ARID5AQ03989 594 aa15.1■□□□□ 0.01
CLN3-242ENST00000635958 WHAMMP3Q1A5X7 153 aa15.1■□□□□ 0.01
CLN3-242ENST00000635958 DPH6Q7L8W6 267 aa15.1■□□□□ 0.01
CLN3-242ENST00000635958 ABI1Q8IZP0 508 aa15.1■□□□□ 0.01
CLN3-242ENST00000635958 BADQ92934 168 aa15.1■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 73.4 ms