RNA–Protein interactions for RNA: ENST00000631023.2

CLN3-240, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-240ENST00000631023 FBXW11Q9UKB1 542 aa22.31■■□□□ 1.16
CLN3-240ENST00000631023 DOCK6Q96HP0 2047 aa22.31■■□□□ 1.16
CLN3-240ENST00000631023 PSMA7O14818 248 aa22.3■■□□□ 1.16
CLN3-240ENST00000631023 CYP11A1P05108 521 aa22.3■■□□□ 1.16
CLN3-240ENST00000631023 PSMC2P35998 433 aaKnown RBP22.3■■□□□ 1.16
CLN3-240ENST00000631023 ARPP19P56211 112 aa22.3■■□□□ 1.16
CLN3-240ENST00000631023 CBX2Q14781 532 aaPredicted RBP22.3■■□□□ 1.16
CLN3-240ENST00000631023 CYP26C1Q6V0L0 522 aa22.3■■□□□ 1.16
CLN3-240ENST00000631023 C15orf39Q6ZRI6 1047 aa22.3■■□□□ 1.16
CLN3-240ENST00000631023 RTL10Q7L3V2 364 aa22.3■■□□□ 1.16
CLN3-240ENST00000631023 CXorf38Q8TB03 319 aa22.3■■□□□ 1.16
CLN3-240ENST00000631023 TMC2Q8TDI7 906 aa22.3■■□□□ 1.16
CLN3-240ENST00000631023 BORCS6Q96GS4 357 aa22.3■■□□□ 1.16
CLN3-240ENST00000631023 FAM84AQ96KN4 292 aa22.3■■□□□ 1.16
CLN3-240ENST00000631023 COL25A1Q9BXS0 654 aaPredicted RBP22.3■■□□□ 1.16
CLN3-240ENST00000631023 LMBRD1Q9NUN5 540 aa22.3■■□□□ 1.16
CLN3-240ENST00000631023 ZDHHC7Q9NXF8 308 aa22.3■■□□□ 1.16
CLN3-240ENST00000631023 KIAA1468Q9P260 1216 aa22.3■■□□□ 1.16
CLN3-240ENST00000631023 CCDC195A0A1B0GUA6 201 aa22.29■■□□□ 1.16
CLN3-240ENST00000631023 OR6C75A6NL08 312 aa22.29■■□□□ 1.16
CLN3-240ENST00000631023 CETN3O15182 167 aa22.29■■□□□ 1.16
CLN3-240ENST00000631023 HUS1O60921 280 aa22.29■■□□□ 1.16
CLN3-240ENST00000631023 CLDN10P78369 228 aa22.29■■□□□ 1.16
CLN3-240ENST00000631023 ROR1Q01973 937 aa22.29■■□□□ 1.16
CLN3-240ENST00000631023 BFSP1Q12934 665 aa22.29■■□□□ 1.16
CLN3-240ENST00000631023 MORC3Q14149 939 aa22.29■■□□□ 1.16
CLN3-240ENST00000631023 UVSSAQ2YD98 709 aa22.29■■□□□ 1.16
CLN3-240ENST00000631023 TPGS2Q68CL5 300 aa22.29■■□□□ 1.16
CLN3-240ENST00000631023 GPR149Q86SP6 731 aa22.29■■□□□ 1.16
CLN3-240ENST00000631023 DHTKD1Q96HY7 919 aaPredicted RBP22.29■■□□□ 1.16
CLN3-240ENST00000631023 HPDLQ96IR7 371 aa22.29■■□□□ 1.16
CLN3-240ENST00000631023 BIN1O00499 593 aa22.29■■□□□ 1.16
CLN3-240ENST00000631023 PHACTR2O75167 634 aa22.29■■□□□ 1.16
CLN3-240ENST00000631023 ZMYND10O75800 440 aa22.29■■□□□ 1.16
CLN3-240ENST00000631023 KRT13P13646 458 aa22.29■■□□□ 1.16
CLN3-240ENST00000631023 ELF1P32519 619 aa22.29■■□□□ 1.16
CLN3-240ENST00000631023 LRRC63Q05C16 580 aa22.29■■□□□ 1.16
CLN3-240ENST00000631023 TRPC3Q13507 836 aa22.29■■□□□ 1.16
CLN3-240ENST00000631023 CCDC149Q6ZUS6 474 aa22.29■■□□□ 1.16
CLN3-240ENST00000631023 INTS8Q75QN2 995 aaKnown RBP22.29■■□□□ 1.16
CLN3-240ENST00000631023 FAM186BQ8IYM0 893 aa22.29■■□□□ 1.16
CLN3-240ENST00000631023 THEM5Q8N1Q8 247 aa22.29■■□□□ 1.16
CLN3-240ENST00000631023 TRIML1Q8N9V2 468 aa22.29■■□□□ 1.16
CLN3-240ENST00000631023 PHF7Q9BWX1 381 aaPredicted RBP22.29■■□□□ 1.16
CLN3-240ENST00000631023 GDAP2Q9NXN4 497 aa22.29■■□□□ 1.16
CLN3-240ENST00000631023 MAFFQ9ULX9 164 aa22.29■■□□□ 1.16
CLN3-240ENST00000631023 LRRIQ3A6PVS8 624 aaPredicted RBP22.28■■□□□ 1.16
CLN3-240ENST00000631023 IKBKBO14920 756 aa22.28■■□□□ 1.16
CLN3-240ENST00000631023 AKAP3O75969 853 aa22.28■■□□□ 1.16
CLN3-240ENST00000631023 ABLIM3O94929 683 aa22.28■■□□□ 1.16
CLN3-240ENST00000631023 CPB1P15086 417 aa22.28■■□□□ 1.16
CLN3-240ENST00000631023 FKBP3Q00688 224 aaKnown RBP22.28■■□□□ 1.16
CLN3-240ENST00000631023 PPM1LQ5SGD2 360 aa22.28■■□□□ 1.16
CLN3-240ENST00000631023 ADHFE1Q8IWW8 467 aa22.28■■□□□ 1.16
CLN3-240ENST00000631023 ZNF516Q92618 1163 aa22.28■■□□□ 1.16
CLN3-240ENST00000631023 MKNK1Q9BUB5 465 aa22.28■■□□□ 1.16
CLN3-240ENST00000631023 MYO10Q9HD67 2058 aa22.27■■□□□ 1.16
CLN3-240ENST00000631023 RFPL2O75678 378 aa22.27■■□□□ 1.16
CLN3-240ENST00000631023 HNRNPA1P09651 372 aaKnown RBP eCLIP22.27■■□□□ 1.16
CLN3-240ENST00000631023 ATF2P15336 505 aa22.27■■□□□ 1.16
CLN3-240ENST00000631023 CCNE1P24864 410 aa22.27■■□□□ 1.16
CLN3-240ENST00000631023 VAMP7P51809 220 aa22.27■■□□□ 1.16
CLN3-240ENST00000631023 ENPEPQ07075 957 aa22.27■■□□□ 1.16
CLN3-240ENST00000631023 BIRC3Q13489 604 aa22.27■■□□□ 1.16
CLN3-240ENST00000631023 WSCD1Q658N2 575 aa22.27■■□□□ 1.16
CLN3-240ENST00000631023 ANKRD40Q6AI12 368 aa22.27■■□□□ 1.16
CLN3-240ENST00000631023 PLEKHO2Q8TD55 490 aa22.27■■□□□ 1.16
CLN3-240ENST00000631023 NECAB3Q96P71 396 aaPredicted RBP22.27■■□□□ 1.16
CLN3-240ENST00000631023 RHOBTB2Q9BYZ6 727 aa22.27■■□□□ 1.16
CLN3-240ENST00000631023 GZF1Q9H116 711 aaPredicted RBP22.27■■□□□ 1.16
CLN3-240ENST00000631023 CLSTN2Q9H4D0 955 aa22.27■■□□□ 1.16
CLN3-240ENST00000631023 PIDD1Q9HB75 910 aa22.27■■□□□ 1.16
CLN3-240ENST00000631023 SNX9Q9Y5X1 595 aa22.27■■□□□ 1.16
CLN3-240ENST00000631023 WDR27A2RRH5 827 aa22.26■■□□□ 1.15
CLN3-240ENST00000631023 C8AP07357 584 aa22.26■■□□□ 1.15
CLN3-240ENST00000631023 EPB41P11171 864 aaKnown RBP22.26■■□□□ 1.15
CLN3-240ENST00000631023 TMEM86AQ8N2M4 240 aa22.26■■□□□ 1.15
CLN3-240ENST00000631023 PRKD2Q9BZL6 878 aa22.26■■□□□ 1.15
CLN3-240ENST00000631023 DLL1O00548 723 aa22.25■■□□□ 1.15
CLN3-240ENST00000631023 PRRG1O14668 218 aa22.25■■□□□ 1.15
CLN3-240ENST00000631023 PAPLNO95428 1278 aa22.25■■□□□ 1.15
CLN3-240ENST00000631023 CST3P01034 146 aaPredicted RBP22.25■■□□□ 1.15
CLN3-240ENST00000631023 WEE2P0C1S8 567 aa22.25■■□□□ 1.15
CLN3-240ENST00000631023 BMP6P22004 513 aa22.25■■□□□ 1.15
CLN3-240ENST00000631023 HOXA9P31269 272 aa22.25■■□□□ 1.15
CLN3-240ENST00000631023 DLG4P78352 724 aa22.25■■□□□ 1.15
CLN3-240ENST00000631023 ZP2Q05996 745 aa22.25■■□□□ 1.15
CLN3-240ENST00000631023 KLHL10Q6JEL2 608 aa22.25■■□□□ 1.15
CLN3-240ENST00000631023 DPH6Q7L8W6 267 aa22.25■■□□□ 1.15
CLN3-240ENST00000631023 SLC7A14Q8TBB6 771 aa22.25■■□□□ 1.15
CLN3-240ENST00000631023 SPATA18Q8TC71 538 aa22.25■■□□□ 1.15
CLN3-240ENST00000631023 SMG7Q92540 1137 aaKnown RBP22.25■■□□□ 1.15
CLN3-240ENST00000631023 AFF4Q9UHB7 1163 aaKnown RBP22.25■■□□□ 1.15
CLN3-240ENST00000631023 DENND4AQ7Z401 1863 aa22.25■■□□□ 1.15
CLN3-240ENST00000631023 BDP1A6H8Y1 2624 aa22.25■■□□□ 1.15
CLN3-240ENST00000631023 BICDL2A1A5D9 508 aa22.25■■□□□ 1.15
CLN3-240ENST00000631023 XYLBO75191 536 aa22.25■■□□□ 1.15
CLN3-240ENST00000631023 ATICP31939 592 aa22.25■■□□□ 1.15
CLN3-240ENST00000631023 SSTR3P32745 418 aaPredicted RBP22.25■■□□□ 1.15
CLN3-240ENST00000631023 SCARA3Q6AZY7 606 aa22.25■■□□□ 1.15
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms