RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 SCARA3Q6AZY7 606 aa20.53■□□□□ 0.88
SQSTM1-216ENST00000626660 PRSS55Q6UWB4 352 aaPredicted RBP20.53■□□□□ 0.88
SQSTM1-216ENST00000626660 RBM23Q86U06 439 aaKnown RBP20.53■□□□□ 0.88
SQSTM1-216ENST00000626660 IRF2BP1Q8IU81 584 aa20.53■□□□□ 0.88
SQSTM1-216ENST00000626660 AOPEPQ8N6M6 819 aa20.53■□□□□ 0.88
SQSTM1-216ENST00000626660 FBXL13Q8NEE6 735 aa20.53■□□□□ 0.88
SQSTM1-216ENST00000626660 TAS1R2Q8TE23 839 aa20.53■□□□□ 0.88
SQSTM1-216ENST00000626660 CDCA3Q99618 268 aaPredicted RBP20.53■□□□□ 0.88
SQSTM1-216ENST00000626660 RXFP1Q9HBX9 757 aa20.53■□□□□ 0.88
SQSTM1-216ENST00000626660 SAMSN1Q9NSI8 373 aaKnown RBP20.53■□□□□ 0.88
SQSTM1-216ENST00000626660 FNIP2Q9P278 1114 aa20.53■□□□□ 0.88
SQSTM1-216ENST00000626660 TIMM13Q9Y5L4 95 aaPredicted RBP20.53■□□□□ 0.88
SQSTM1-216ENST00000626660 CDH23Q9H251 3354 aa20.52■□□□□ 0.88
SQSTM1-216ENST00000626660 KCNJ18B7U540 433 aa20.52■□□□□ 0.88
SQSTM1-216ENST00000626660 LILRB3O75022 631 aa20.52■□□□□ 0.88
SQSTM1-216ENST00000626660 AFPP02771 609 aaKnown RBP20.52■□□□□ 0.88
SQSTM1-216ENST00000626660 ADH1AP07327 375 aa20.52■□□□□ 0.88
SQSTM1-216ENST00000626660 P4HA1P13674 534 aa20.52■□□□□ 0.88
SQSTM1-216ENST00000626660 EEF1GP26641 437 aaKnown RBP20.52■□□□□ 0.88
SQSTM1-216ENST00000626660 NRIP1P48552 1158 aa20.52■□□□□ 0.88
SQSTM1-216ENST00000626660 MYL7Q01449 175 aa20.52■□□□□ 0.88
SQSTM1-216ENST00000626660 YWHAHQ04917 246 aaPredicted RBP20.52■□□□□ 0.88
SQSTM1-216ENST00000626660 KCNH2Q12809 1159 aa20.52■□□□□ 0.88
SQSTM1-216ENST00000626660 KCNJ12Q14500 433 aa20.52■□□□□ 0.88
SQSTM1-216ENST00000626660 WDR72Q3MJ13 1102 aa20.52■□□□□ 0.88
SQSTM1-216ENST00000626660 HSP90AA4PQ58FG1 418 aa20.52■□□□□ 0.88
SQSTM1-216ENST00000626660 ZNF667Q5HYK9 610 aa20.52■□□□□ 0.88
SQSTM1-216ENST00000626660 OVOS1Q6IE37 1185 aa20.52■□□□□ 0.88
SQSTM1-216ENST00000626660 ZNF280DQ6N043 979 aa20.52■□□□□ 0.88
SQSTM1-216ENST00000626660 ADGRD2Q7Z7M1 963 aa20.52■□□□□ 0.88
SQSTM1-216ENST00000626660 LNX1Q8TBB1 728 aaPredicted RBP20.52■□□□□ 0.88
SQSTM1-216ENST00000626660 MTRRQ9UBK8 725 aa20.52■□□□□ 0.88
SQSTM1-216ENST00000626660 TSC2P49815 1807 aa20.51■□□□□ 0.87
SQSTM1-216ENST00000626660 CYP11A1P05108 521 aa20.51■□□□□ 0.87
SQSTM1-216ENST00000626660 CNPP09543 421 aaKnown RBP20.51■□□□□ 0.87
SQSTM1-216ENST00000626660 KLRC2P26717 231 aa20.51■□□□□ 0.87
SQSTM1-216ENST00000626660 NDUFV1P49821 464 aa20.51■□□□□ 0.87
SQSTM1-216ENST00000626660 CCDC85BQ15834 202 aaPredicted RBP20.51■□□□□ 0.87
SQSTM1-216ENST00000626660 CTXN3Q4LDR2 81 aa20.51■□□□□ 0.87
SQSTM1-216ENST00000626660 CBWD6Q4V339 395 aa20.51■□□□□ 0.87
SQSTM1-216ENST00000626660 CBWD3Q5JTY5 395 aa20.51■□□□□ 0.87
SQSTM1-216ENST00000626660 CBWD5Q5RIA9 395 aa20.51■□□□□ 0.87
SQSTM1-216ENST00000626660 DPH6Q7L8W6 267 aa20.51■□□□□ 0.87
SQSTM1-216ENST00000626660 PPFIBP1Q86W92 1011 aa20.51■□□□□ 0.87
SQSTM1-216ENST00000626660 THEM5Q8N1Q8 247 aa20.51■□□□□ 0.87
SQSTM1-216ENST00000626660 TMEM86AQ8N2M4 240 aa20.51■□□□□ 0.87
SQSTM1-216ENST00000626660 TOP6BLQ8N6T0 577 aa20.51■□□□□ 0.87
SQSTM1-216ENST00000626660 ANKRD20A12PQ8NF67 263 aa20.51■□□□□ 0.87
SQSTM1-216ENST00000626660 KLHL5Q96PQ7 755 aa20.51■□□□□ 0.87
SQSTM1-216ENST00000626660 MMS19Q96T76 1030 aa20.51■□□□□ 0.87
SQSTM1-216ENST00000626660 OXCT2Q9BYC2 517 aaPredicted RBP20.51■□□□□ 0.87
SQSTM1-216ENST00000626660 XYLT2Q9H1B5 865 aa20.51■□□□□ 0.87
SQSTM1-216ENST00000626660 IGFLR1Q9H665 355 aa20.51■□□□□ 0.87
SQSTM1-216ENST00000626660 VRTNQ9H8Y1 702 aa20.51■□□□□ 0.87
SQSTM1-216ENST00000626660 FANCLQ9NW38 375 aa20.51■□□□□ 0.87
SQSTM1-216ENST00000626660 NXF1Q9UBU9 619 aaKnown RBP20.51■□□□□ 0.87
SQSTM1-216ENST00000626660 BACE2Q9Y5Z0 518 aa20.51■□□□□ 0.87
SQSTM1-216ENST00000626660 BECN2A8MW95 431 aa20.5■□□□□ 0.87
SQSTM1-216ENST00000626660 PER2O15055 1255 aa20.5■□□□□ 0.87
SQSTM1-216ENST00000626660 P4HA2O15460 535 aa20.5■□□□□ 0.87
SQSTM1-216ENST00000626660 TEX28O15482 410 aa20.5■□□□□ 0.87
SQSTM1-216ENST00000626660 NCK2O43639 380 aa20.5■□□□□ 0.87
SQSTM1-216ENST00000626660 OAZ2O95190 189 aa20.5■□□□□ 0.87
SQSTM1-216ENST00000626660 ASS1P00966 412 aaKnown RBP20.5■□□□□ 0.87
SQSTM1-216ENST00000626660 TPM2P07951 284 aa20.5■□□□□ 0.87
SQSTM1-216ENST00000626660 PRKCSHP14314 528 aaPredicted RBP20.5■□□□□ 0.87
SQSTM1-216ENST00000626660 MAN2A1Q16706 1144 aa20.5■□□□□ 0.87
SQSTM1-216ENST00000626660 DUSP6Q16828 381 aa20.5■□□□□ 0.87
SQSTM1-216ENST00000626660 TCP11X2Q5H9J9 407 aa20.5■□□□□ 0.87
SQSTM1-216ENST00000626660 WDR44Q5JSH3 913 aa20.5■□□□□ 0.87
SQSTM1-216ENST00000626660 CDKAL1Q5VV42 579 aa20.5■□□□□ 0.87
SQSTM1-216ENST00000626660 WSCD1Q658N2 575 aa20.5■□□□□ 0.87
SQSTM1-216ENST00000626660 SPATA18Q8TC71 538 aa20.5■□□□□ 0.87
SQSTM1-216ENST00000626660 PPM1EQ8WY54 764 aa20.5■□□□□ 0.87
SQSTM1-216ENST00000626660 RAB20Q9NX57 234 aa20.5■□□□□ 0.87
SQSTM1-216ENST00000626660 L1RE1Q9UN81 338 aa20.5■□□□□ 0.87
SQSTM1-216ENST00000626660 COQ4Q9Y3A0 265 aa20.5■□□□□ 0.87
SQSTM1-216ENST00000626660 BRWD1Q9NSI6 2320 aa20.49■□□□□ 0.87
SQSTM1-216ENST00000626660 PMM2O15305 246 aa20.49■□□□□ 0.87
SQSTM1-216ENST00000626660 CLASP2O75122 1294 aaKnown RBP20.49■□□□□ 0.87
SQSTM1-216ENST00000626660 RPL17P18621 184 aaKnown RBP20.49■□□□□ 0.87
SQSTM1-216ENST00000626660 NOP14P78316 857 aaKnown RBP20.49■□□□□ 0.87
SQSTM1-216ENST00000626660 HYAL1Q12794 435 aa20.49■□□□□ 0.87
SQSTM1-216ENST00000626660 MRPL58Q14197 206 aaKnown RBP20.49■□□□□ 0.87
SQSTM1-216ENST00000626660 SKIV2LQ15477 1246 aaKnown RBP20.49■□□□□ 0.87
SQSTM1-216ENST00000626660 GLYCTKQ8IVS8 523 aa20.49■□□□□ 0.87
SQSTM1-216ENST00000626660 ADGRF2Q8IZF7 708 aa20.49■□□□□ 0.87
SQSTM1-216ENST00000626660 PDCL2Q8N4E4 241 aa20.49■□□□□ 0.87
SQSTM1-216ENST00000626660 TUBGCP2Q9BSJ2 902 aa20.49■□□□□ 0.87
SQSTM1-216ENST00000626660 OR6C75A6NL08 312 aa20.48■□□□□ 0.87
SQSTM1-216ENST00000626660 PES1O00541 588 aaKnown RBP20.48■□□□□ 0.87
SQSTM1-216ENST00000626660 SRGAP2BP0DMP2 458 aa20.48■□□□□ 0.87
SQSTM1-216ENST00000626660 CDK11BP21127 795 aaKnown RBP20.48■□□□□ 0.87
SQSTM1-216ENST00000626660 OR1D2P34982 312 aa20.48■□□□□ 0.87
SQSTM1-216ENST00000626660 TPM4P67936 248 aa20.48■□□□□ 0.87
SQSTM1-216ENST00000626660 NCAPHQ15003 741 aa20.48■□□□□ 0.87
SQSTM1-216ENST00000626660 SOWAHAQ2M3V2 549 aa20.48■□□□□ 0.87
SQSTM1-216ENST00000626660 LRSAM1Q6UWE0 723 aa20.48■□□□□ 0.87
SQSTM1-216ENST00000626660 EFHBQ8N7U6 833 aa20.48■□□□□ 0.87
SQSTM1-216ENST00000626660 SEMA4DQ92854 862 aa20.48■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms