RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 TSHZ1Q6ZSZ6 1077 aa11.29□□□□□ -0.6
CUX1-221ENST00000622516 WDTC1Q8N5D0 677 aa11.29□□□□□ -0.6
CUX1-221ENST00000622516 BCAS4Q8TDM0 211 aa11.29□□□□□ -0.6
CUX1-221ENST00000622516 SCLT1Q96NL6 688 aa11.29□□□□□ -0.6
CUX1-221ENST00000622516 MAF1Q9H063 256 aa11.29□□□□□ -0.6
CUX1-221ENST00000622516 FAM107BQ9H098 131 aa11.29□□□□□ -0.6
CUX1-221ENST00000622516 CXCL16Q9H2A7 254 aa11.29□□□□□ -0.6
CUX1-221ENST00000622516 FZD8Q9H461 694 aa11.29□□□□□ -0.6
CUX1-221ENST00000622516 PTPRHQ9HD43 1115 aa11.29□□□□□ -0.6
CUX1-221ENST00000622516 PCYOX1Q9UHG3 505 aa11.29□□□□□ -0.6
CUX1-221ENST00000622516 RASAL2Q9UJF2 1139 aa11.29□□□□□ -0.6
CUX1-221ENST00000622516 GRIN2DO15399 1336 aa11.29□□□□□ -0.6
CUX1-221ENST00000622516 FAM187AA6NFU0 413 aa11.28□□□□□ -0.6
CUX1-221ENST00000622516 BTBD19C9JJ37 291 aa11.28□□□□□ -0.6
CUX1-221ENST00000622516 GOLGA8SH3BPF8 625 aa11.28□□□□□ -0.6
CUX1-221ENST00000622516 PIK3R2O00459 728 aa11.28□□□□□ -0.6
CUX1-221ENST00000622516 PROSCO94903 275 aa11.28□□□□□ -0.6
CUX1-221ENST00000622516 ITGBL1O95965 494 aaPredicted RBP11.28□□□□□ -0.6
CUX1-221ENST00000622516 SLCO1A2P46721 670 aa11.28□□□□□ -0.6
CUX1-221ENST00000622516 CDR1P51861 262 aa11.28□□□□□ -0.6
CUX1-221ENST00000622516 SEC24CP53992 1094 aa11.28□□□□□ -0.6
CUX1-221ENST00000622516 SGSM1Q2NKQ1 1148 aa11.28□□□□□ -0.6
CUX1-221ENST00000622516 KCNV1Q6PIU1 500 aa11.28□□□□□ -0.6
CUX1-221ENST00000622516 MORC4Q8TE76 937 aa11.28□□□□□ -0.6
CUX1-221ENST00000622516 FAM81BQ96LP2 452 aa11.28□□□□□ -0.6
CUX1-221ENST00000622516 NIF3L1Q9GZT8 377 aa11.28□□□□□ -0.6
CUX1-221ENST00000622516 XYLT2Q9H1B5 865 aa11.28□□□□□ -0.6
CUX1-221ENST00000622516 EPB41L4BQ9H329 900 aa11.28□□□□□ -0.6
CUX1-221ENST00000622516 AVENQ9NQS1 362 aaPredicted RBP11.28□□□□□ -0.6
CUX1-221ENST00000622516 HMGXB4Q9UGU5 601 aa11.28□□□□□ -0.6
CUX1-221ENST00000622516 CCL15-CCL14A0A0B4J2E2 113 aa11.28□□□□□ -0.6
CUX1-221ENST00000622516 LACTBL1A8MY62 500 aa11.28□□□□□ -0.6
CUX1-221ENST00000622516 ITGB3P05106 788 aa11.28□□□□□ -0.6
CUX1-221ENST00000622516 ASPAP45381 313 aa11.28□□□□□ -0.6
CUX1-221ENST00000622516 CCT5P48643 541 aa11.28□□□□□ -0.6
CUX1-221ENST00000622516 PMS2P54278 862 aa11.28□□□□□ -0.6
CUX1-221ENST00000622516 OGDHQ02218 1023 aa11.28□□□□□ -0.6
CUX1-221ENST00000622516 KRT17Q04695 432 aa11.28□□□□□ -0.6
CUX1-221ENST00000622516 CCL15Q16663 113 aa11.28□□□□□ -0.6
CUX1-221ENST00000622516 CD302Q8IX05 232 aa11.28□□□□□ -0.6
CUX1-221ENST00000622516 HAUS1Q96CS2 278 aa11.28□□□□□ -0.6
CUX1-221ENST00000622516 RPF1Q9H9Y2 349 aaKnown RBP11.28□□□□□ -0.6
CUX1-221ENST00000622516 ASIC3Q9UHC3 531 aa11.28□□□□□ -0.6
CUX1-221ENST00000622516 FSCN2O14926 492 aa11.28□□□□□ -0.6
CUX1-221ENST00000622516 SHOX2O60902 331 aaPredicted RBP11.28□□□□□ -0.6
CUX1-221ENST00000622516 ECEL1O95672 775 aa11.28□□□□□ -0.6
CUX1-221ENST00000622516 STAG3L1P0CL83 205 aa11.28□□□□□ -0.6
CUX1-221ENST00000622516 ATF7P17544 494 aaPredicted RBP11.28□□□□□ -0.6
CUX1-221ENST00000622516 PROZP22891 400 aa11.28□□□□□ -0.6
CUX1-221ENST00000622516 MMP8P22894 467 aa11.28□□□□□ -0.6
CUX1-221ENST00000622516 ENPEPQ07075 957 aa11.28□□□□□ -0.6
CUX1-221ENST00000622516 PRAMEF19Q5SWL8 479 aa11.28□□□□□ -0.6
CUX1-221ENST00000622516 LDLRAD1Q5T700 205 aa11.28□□□□□ -0.6
CUX1-221ENST00000622516 JADE1Q6IE81 842 aa11.28□□□□□ -0.6
CUX1-221ENST00000622516 DCUN1D2Q6PH85 259 aa11.28□□□□□ -0.6
CUX1-221ENST00000622516 MAMDC4Q6UXC1 1216 aa11.28□□□□□ -0.6
CUX1-221ENST00000622516 EIF1ADQ8N9N8 165 aaKnown RBP11.28□□□□□ -0.6
CUX1-221ENST00000622516 FEZF2Q8TBJ5 459 aa11.28□□□□□ -0.6
CUX1-221ENST00000622516 NLRP7Q8WX94 980 aa11.28□□□□□ -0.6
CUX1-221ENST00000622516 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP11.28□□□□□ -0.63e-7■■■■■ 94
CUX1-221ENST00000622516 TWNKQ96RR1 684 aa11.28□□□□□ -0.6
CUX1-221ENST00000622516 SIX4Q9UIU6 781 aa11.28□□□□□ -0.6
CUX1-221ENST00000622516 ASB14A6NK59 587 aa11.27□□□□□ -0.61
CUX1-221ENST00000622516 EIF3HO15372 352 aaKnown RBP eCLIP11.27□□□□□ -0.611e-7■■■□□ 16.5
CUX1-221ENST00000622516 CAND2O75155 1236 aa11.27□□□□□ -0.61
CUX1-221ENST00000622516 PPFIA2O75334 1257 aa11.27□□□□□ -0.61
CUX1-221ENST00000622516 TNNC2P02585 160 aa11.27□□□□□ -0.61
CUX1-221ENST00000622516 MYBL1P10243 752 aa11.27□□□□□ -0.61
CUX1-221ENST00000622516 HSPA6P17066 643 aa11.27□□□□□ -0.61
CUX1-221ENST00000622516 ZNF132P52740 706 aa11.27□□□□□ -0.61
CUX1-221ENST00000622516 MAGOHP61326 146 aaKnown RBP11.27□□□□□ -0.61
CUX1-221ENST00000622516 LACTBP83111 547 aaPredicted RBP11.27□□□□□ -0.61
CUX1-221ENST00000622516 ZNF252P-AS1Q0IIN9 211 aa11.27□□□□□ -0.61
CUX1-221ENST00000622516 TFDP1Q14186 410 aa11.27□□□□□ -0.61
CUX1-221ENST00000622516 PPP2R5EQ16537 467 aa11.27□□□□□ -0.61
CUX1-221ENST00000622516 PLEKHA7Q6IQ23 1121 aa11.27□□□□□ -0.61
CUX1-221ENST00000622516 DENND1BQ6P3S1 775 aa11.27□□□□□ -0.61
CUX1-221ENST00000622516 DPP9Q86TI2 863 aa11.27□□□□□ -0.61
CUX1-221ENST00000622516 PHF13Q86YI8 300 aaPredicted RBP11.27□□□□□ -0.61
CUX1-221ENST00000622516 C1orf127Q8N9H9 656 aa11.27□□□□□ -0.61
CUX1-221ENST00000622516 ANKRD36BP1Q96IX9 119 aa11.27□□□□□ -0.61
CUX1-221ENST00000622516 C2orf40Q9H1Z8 148 aa11.27□□□□□ -0.61
CUX1-221ENST00000622516 SMYD3Q9H7B4 428 aa11.27□□□□□ -0.61
CUX1-221ENST00000622516 CYTH4Q9UIA0 394 aa11.27□□□□□ -0.61
CUX1-221ENST00000622516 CNTN6Q9UQ52 1028 aa11.27□□□□□ -0.61
CUX1-221ENST00000622516 SBDSQ9Y3A5 250 aaKnown RBP eCLIP11.27□□□□□ -0.61
CUX1-221ENST00000622516 IVNS1ABPQ9Y6Y0 642 aa11.27□□□□□ -0.61
CUX1-221ENST00000622516 LRRC37A2A6NM11 1700 aa11.27□□□□□ -0.61
CUX1-221ENST00000622516 PODXLO00592 558 aa11.27□□□□□ -0.61
CUX1-221ENST00000622516 ARF4P18085 180 aaPredicted RBP11.27□□□□□ -0.61
CUX1-221ENST00000622516 SF3A3Q12874 501 aaKnown RBP eCLIP11.27□□□□□ -0.61
CUX1-221ENST00000622516 GPR162Q16538 588 aa11.27□□□□□ -0.61
CUX1-221ENST00000622516 SMTNL2Q2TAL5 461 aa11.27□□□□□ -0.61
CUX1-221ENST00000622516 GADD45GIP1Q8TAE8 222 aaPredicted RBP11.27□□□□□ -0.61
CUX1-221ENST00000622516 ZC3H15Q8WU90 426 aaKnown RBP11.27□□□□□ -0.61
CUX1-221ENST00000622516 LENG1Q96BZ8 264 aaPredicted RBP11.27□□□□□ -0.61
CUX1-221ENST00000622516 DDX23Q9BUQ8 820 aaKnown RBP11.27□□□□□ -0.61
CUX1-221ENST00000622516 TXLNGYQ9BZA5 131 aa11.27□□□□□ -0.61
CUX1-221ENST00000622516 SDCBP2Q9H190 292 aa11.27□□□□□ -0.61
CUX1-221ENST00000622516 MRPL47Q9HD33 250 aaKnown RBP11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms