RNA–Protein interactions for RNA: ENST00000621814.4

CCDC88A-214, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5 BASIC

Gene CCDC88A, Length 3,089 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-214ENST00000621814 TRPM8Q7Z2W7 1104 aa13.7□□□□□ -0.22
CCDC88A-214ENST00000621814 THNSL1Q8IYQ7 743 aa13.7□□□□□ -0.22
CCDC88A-214ENST00000621814 LRRC71Q8N4P6 559 aa13.7□□□□□ -0.22
CCDC88A-214ENST00000621814 SERPINB12Q96P63 405 aa13.7□□□□□ -0.22
CCDC88A-214ENST00000621814 SENP7Q9BQF6 1050 aa13.7□□□□□ -0.22
CCDC88A-214ENST00000621814 ROPN1BQ9BZX4 212 aaPredicted RBP13.7□□□□□ -0.22
CCDC88A-214ENST00000621814 ROPN1Q9HAT0 212 aaPredicted RBP13.7□□□□□ -0.22
CCDC88A-214ENST00000621814 KIAA1586Q9HCI6 787 aa13.7□□□□□ -0.22
CCDC88A-214ENST00000621814 SPATA31C2B4DYI2 1134 aa13.7□□□□□ -0.22
CCDC88A-214ENST00000621814 RASA4BC9J798 803 aa13.7□□□□□ -0.22
CCDC88A-214ENST00000621814 ASAP2O43150 1006 aa13.7□□□□□ -0.22
CCDC88A-214ENST00000621814 RASA4O43374 803 aa13.7□□□□□ -0.22
CCDC88A-214ENST00000621814 KRT19P08727 400 aa13.7□□□□□ -0.22
CCDC88A-214ENST00000621814 FASTKD3Q14CZ7 662 aaKnown RBP13.7□□□□□ -0.22
CCDC88A-214ENST00000621814 DALRD3Q5D0E6 543 aaKnown RBP13.7□□□□□ -0.22
CCDC88A-214ENST00000621814 PIGWQ7Z7B1 504 aa13.7□□□□□ -0.22
CCDC88A-214ENST00000621814 ZNF677Q86XU0 584 aa13.7□□□□□ -0.22
CCDC88A-214ENST00000621814 CDHR1Q96JP9 859 aa13.7□□□□□ -0.22
CCDC88A-214ENST00000621814 TGS1Q96RS0 853 aaKnown RBP13.7□□□□□ -0.22
CCDC88A-214ENST00000621814 PPP1R16BQ96T49 567 aa13.7□□□□□ -0.22
CCDC88A-214ENST00000621814 TMEM121Q9BTD3 319 aa13.7□□□□□ -0.22
CCDC88A-214ENST00000621814 PORCNQ9H237 461 aa13.7□□□□□ -0.22
CCDC88A-214ENST00000621814 KDM4CQ9H3R0 1056 aa13.7□□□□□ -0.22
CCDC88A-214ENST00000621814 ZWILCHQ9H900 591 aa13.7□□□□□ -0.22
CCDC88A-214ENST00000621814 VPS37BQ9H9H4 285 aa13.7□□□□□ -0.22
CCDC88A-214ENST00000621814 PARVAQ9NVD7 372 aa13.7□□□□□ -0.22
CCDC88A-214ENST00000621814 EPB41L3Q9Y2J2 1087 aaPredicted RBP13.7□□□□□ -0.22
CCDC88A-214ENST00000621814 GJB1P08034 283 aa13.69□□□□□ -0.22
CCDC88A-214ENST00000621814 CD19P15391 556 aa13.69□□□□□ -0.22
CCDC88A-214ENST00000621814 SNCBQ16143 134 aa13.69□□□□□ -0.22
CCDC88A-214ENST00000621814 SYCP2LQ5T4T6 812 aa13.69□□□□□ -0.22
CCDC88A-214ENST00000621814 DCAF15Q66K64 600 aa13.69□□□□□ -0.22
CCDC88A-214ENST00000621814 TRIM50Q86XT4 487 aa13.69□□□□□ -0.22
CCDC88A-214ENST00000621814 PRPF31Q8WWY3 499 aaKnown RBP13.69□□□□□ -0.22
CCDC88A-214ENST00000621814 KIF9Q9HAQ2 790 aa13.69□□□□□ -0.22
CCDC88A-214ENST00000621814 EXOC1LA0A1B0GW35 172 aa13.69□□□□□ -0.22
CCDC88A-214ENST00000621814 SGK1O00141 431 aa13.69□□□□□ -0.22
CCDC88A-214ENST00000621814 UBOX5O94941 541 aa13.69□□□□□ -0.22
CCDC88A-214ENST00000621814 MAN1A1P33908 653 aa13.69□□□□□ -0.22
CCDC88A-214ENST00000621814 CETN2P41208 172 aa13.69□□□□□ -0.22
CCDC88A-214ENST00000621814 MAGEA4P43358 317 aa13.69□□□□□ -0.22
CCDC88A-214ENST00000621814 KLF1Q13351 362 aaPredicted RBP13.69□□□□□ -0.22
CCDC88A-214ENST00000621814 CCNG2Q16589 344 aa13.69□□□□□ -0.22
CCDC88A-214ENST00000621814 MFSD5Q6N075 450 aa13.69□□□□□ -0.22
CCDC88A-214ENST00000621814 XRRA1Q6P2D8 792 aa13.69□□□□□ -0.22
CCDC88A-214ENST00000621814 DNAJC24Q6P3W2 148 aa13.69□□□□□ -0.22
CCDC88A-214ENST00000621814 ANKMY2Q8IV38 441 aa13.69□□□□□ -0.22
CCDC88A-214ENST00000621814 KIF2BQ8N4N8 673 aa13.69□□□□□ -0.22
CCDC88A-214ENST00000621814 REPS2Q8NFH8 660 aa13.69□□□□□ -0.22
CCDC88A-214ENST00000621814 TMEM109Q9BVC6 243 aa13.69□□□□□ -0.22
CCDC88A-214ENST00000621814 NKIRAS1Q9NYS0 192 aa13.69□□□□□ -0.22
CCDC88A-214ENST00000621814 NEU2Q9Y3R4 380 aa13.69□□□□□ -0.22
CCDC88A-214ENST00000621814 H0YCG3 227 aa13.68□□□□□ -0.22
CCDC88A-214ENST00000621814 KRT15P19012 456 aa13.68□□□□□ -0.22
CCDC88A-214ENST00000621814 ATP5DP30049 168 aa13.68□□□□□ -0.22
CCDC88A-214ENST00000621814 HIRAP54198 1017 aaPredicted RBP13.68□□□□□ -0.22
CCDC88A-214ENST00000621814 TRPC3Q13507 836 aa13.68□□□□□ -0.22
CCDC88A-214ENST00000621814 CAPSQ13938 189 aa13.68□□□□□ -0.22
CCDC88A-214ENST00000621814 SLFN12LQ6IEE8 588 aa13.68□□□□□ -0.22
CCDC88A-214ENST00000621814 GPAT2Q6NUI2 795 aa13.68□□□□□ -0.22
CCDC88A-214ENST00000621814 C4orf33Q8N1A6 199 aa13.68□□□□□ -0.22
CCDC88A-214ENST00000621814 CCDC63Q8NA47 563 aa13.68□□□□□ -0.22
CCDC88A-214ENST00000621814 CCDC77Q9BR77 488 aa13.68□□□□□ -0.22
CCDC88A-214ENST00000621814 AGAP1Q9UPQ3 857 aa13.68□□□□□ -0.22
CCDC88A-214ENST00000621814 AGTPBP1Q9UPW5 1226 aa13.68□□□□□ -0.22
CCDC88A-214ENST00000621814 STK38LQ9Y2H1 464 aa13.68□□□□□ -0.22
CCDC88A-214ENST00000621814 PSTPIP1O43586 416 aa13.68□□□□□ -0.22
CCDC88A-214ENST00000621814 SNX3O60493 162 aa13.68□□□□□ -0.22
CCDC88A-214ENST00000621814 CSDE1O75534 798 aaKnown RBP13.68□□□□□ -0.22
CCDC88A-214ENST00000621814 PLCB4Q15147 1175 aa13.68□□□□□ -0.22
CCDC88A-214ENST00000621814 LY6KQ17RY6 165 aa13.68□□□□□ -0.22
CCDC88A-214ENST00000621814 NCAPG2Q86XI2 1143 aa13.68□□□□□ -0.22
CCDC88A-214ENST00000621814 ZBED8Q8IZ13 594 aa13.68□□□□□ -0.22
CCDC88A-214ENST00000621814 SLCO2A1Q92959 643 aa13.68□□□□□ -0.22
CCDC88A-214ENST00000621814 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP13.68□□□□□ -0.22
CCDC88A-214ENST00000621814 TPX2Q9ULW0 747 aaKnown RBP13.68□□□□□ -0.22
CCDC88A-214ENST00000621814 USP15Q9Y4E8 981 aaPredicted RBP13.68□□□□□ -0.22
CCDC88A-214ENST00000621814 SCINQ9Y6U3 715 aa13.68□□□□□ -0.22
CCDC88A-214ENST00000621814 DOCK5Q9H7D0 1870 aa13.68□□□□□ -0.22
CCDC88A-214ENST00000621814 A0A0B4J269 797 aa13.67□□□□□ -0.22
CCDC88A-214ENST00000621814 NAMPTP43490 491 aa13.67□□□□□ -0.22
CCDC88A-214ENST00000621814 RAP1GAPP47736 663 aa13.67□□□□□ -0.22
CCDC88A-214ENST00000621814 OGDHQ02218 1023 aa13.67□□□□□ -0.22
CCDC88A-214ENST00000621814 SGSM3Q96HU1 749 aa13.67□□□□□ -0.22
CCDC88A-214ENST00000621814 CGRRF1Q99675 332 aa13.67□□□□□ -0.22
CCDC88A-214ENST00000621814 TJP2Q9UDY2 1190 aa13.67□□□□□ -0.22
CCDC88A-214ENST00000621814 IP6K2Q9UHH9 426 aa13.67□□□□□ -0.22
CCDC88A-214ENST00000621814 SPDYE16A6NNV3 312 aaPredicted RBP13.67□□□□□ -0.22
CCDC88A-214ENST00000621814 PIK3R2O00459 728 aa13.67□□□□□ -0.22
CCDC88A-214ENST00000621814 PECAM1P16284 738 aaPredicted RBP13.67□□□□□ -0.22
CCDC88A-214ENST00000621814 STAT5BP51692 787 aa13.67□□□□□ -0.22
CCDC88A-214ENST00000621814 PLEKHA7Q6IQ23 1121 aa13.67□□□□□ -0.22
CCDC88A-214ENST00000621814 KATNAL2Q8IYT4 538 aa13.67□□□□□ -0.22
CCDC88A-214ENST00000621814 RNF149Q8NC42 400 aa13.67□□□□□ -0.22
CCDC88A-214ENST00000621814 EXD1Q8NHP7 514 aa13.67□□□□□ -0.22
CCDC88A-214ENST00000621814 CNKSR2Q8WXI2 1034 aa13.67□□□□□ -0.22
CCDC88A-214ENST00000621814 PNMA3Q9UL41 463 aa13.67□□□□□ -0.22
CCDC88A-214ENST00000621814 LDHAP00338 332 aaKnown RBP13.67□□□□□ -0.22
CCDC88A-214ENST00000621814 RTP1P59025 263 aa13.67□□□□□ -0.22
CCDC88A-214ENST00000621814 TNFAIP8L3Q5GJ75 292 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms