RNA–Protein interactions for RNA: ENST00000621325.1

LIME1-210, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 2

Gene LIME1, Length 2,410 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-210ENST00000621325 PPP2R5EQ16537 467 aa22.63■■□□□ 1.21
LIME1-210ENST00000621325 TTMPQ5BVD1 217 aa22.63■■□□□ 1.21
LIME1-210ENST00000621325 PRAMEF19Q5SWL8 479 aa22.63■■□□□ 1.21
LIME1-210ENST00000621325 DUPD1Q68J44 220 aa22.63■■□□□ 1.21
LIME1-210ENST00000621325 JADE1Q6IE81 842 aa22.63■■□□□ 1.21
LIME1-210ENST00000621325 PLEKHA7Q6IQ23 1121 aa22.63■■□□□ 1.21
LIME1-210ENST00000621325 PACS2Q86VP3 889 aa22.63■■□□□ 1.21
LIME1-210ENST00000621325 OR6J1Q8NGC5 347 aa22.63■■□□□ 1.21
LIME1-210ENST00000621325 NLRP7Q8WX94 980 aa22.63■■□□□ 1.21
LIME1-210ENST00000621325 RUFY1Q96T51 708 aa22.63■■□□□ 1.21
LIME1-210ENST00000621325 ERP44Q9BS26 406 aa22.63■■□□□ 1.21
LIME1-210ENST00000621325 HERPUD2Q9BSE4 406 aa22.63■■□□□ 1.21
LIME1-210ENST00000621325 CPA4Q9UI42 421 aa22.63■■□□□ 1.21
LIME1-210ENST00000621325 PROSCO94903 275 aa22.62■■□□□ 1.21
LIME1-210ENST00000621325 HSPA6P17066 643 aa22.62■■□□□ 1.21
LIME1-210ENST00000621325 FGFR4P22455 802 aa22.62■■□□□ 1.21
LIME1-210ENST00000621325 UAP1Q16222 522 aaPredicted RBP22.62■■□□□ 1.21
LIME1-210ENST00000621325 IFNLR1Q8IU57 520 aaPredicted RBP22.62■■□□□ 1.21
LIME1-210ENST00000621325 RRP15Q9Y3B9 282 aaKnown RBP22.62■■□□□ 1.21
LIME1-210ENST00000621325 MMP8P22894 467 aa22.62■■□□□ 1.21
LIME1-210ENST00000621325 TMOD1P28289 359 aa22.62■■□□□ 1.21
LIME1-210ENST00000621325 CHRNA3P32297 505 aa22.62■■□□□ 1.21
LIME1-210ENST00000621325 HSD17B3P37058 310 aa22.62■■□□□ 1.21
LIME1-210ENST00000621325 CDH8P55286 799 aa22.62■■□□□ 1.21
LIME1-210ENST00000621325 C1QBPQ07021 282 aaKnown RBP22.62■■□□□ 1.21
LIME1-210ENST00000621325 VCPIP1Q96JH7 1222 aa22.62■■□□□ 1.21
LIME1-210ENST00000621325 SCLT1Q96NL6 688 aa22.62■■□□□ 1.21
LIME1-210ENST00000621325 ABHD16BQ9H3Z7 469 aa22.62■■□□□ 1.21
LIME1-210ENST00000621325 FAM114A2Q9NRY5 505 aa22.62■■□□□ 1.21
LIME1-210ENST00000621325 PSD3Q9NYI0 1048 aa22.62■■□□□ 1.21
LIME1-210ENST00000621325 SNX24Q9Y343 169 aa22.62■■□□□ 1.21
LIME1-210ENST00000621325 GOLGA6CA6NDK9 693 aa22.61■■□□□ 1.21
LIME1-210ENST00000621325 IL18RAPO95256 599 aa22.61■■□□□ 1.21
LIME1-210ENST00000621325 GOLGA6DP0CG33 693 aa22.61■■□□□ 1.21
LIME1-210ENST00000621325 MCF2P10911 925 aa22.61■■□□□ 1.21
LIME1-210ENST00000621325 KCNJ1P48048 391 aa22.61■■□□□ 1.21
LIME1-210ENST00000621325 TAS2R40P59535 323 aa22.61■■□□□ 1.21
LIME1-210ENST00000621325 RPL7AP62424 266 aaKnown RBP22.61■■□□□ 1.21
LIME1-210ENST00000621325 ORC1Q13415 861 aa22.61■■□□□ 1.21
LIME1-210ENST00000621325 DHX34Q14147 1143 aaKnown RBP22.61■■□□□ 1.21
LIME1-210ENST00000621325 CCDC137Q6PK04 289 aaKnown RBP22.61■■□□□ 1.21
LIME1-210ENST00000621325 KIAA0319LQ8IZA0 1049 aa22.61■■□□□ 1.21
LIME1-210ENST00000621325 WDTC1Q8N5D0 677 aa22.61■■□□□ 1.21
LIME1-210ENST00000621325 GOLGA6L1Q8N7Z2 621 aa22.61■■□□□ 1.21
LIME1-210ENST00000621325 DDX27Q96GQ7 796 aaKnown RBP22.61■■□□□ 1.21
LIME1-210ENST00000621325 RAB17Q9H0T7 212 aa22.61■■□□□ 1.21
LIME1-210ENST00000621325 GOLGA6AQ9NYA3 693 aa22.61■■□□□ 1.21
LIME1-210ENST00000621325 COL1A2P08123 1366 aa22.61■■□□□ 1.21
LIME1-210ENST00000621325 OPA1O60313 960 aa22.61■■□□□ 1.21
LIME1-210ENST00000621325 ITGB3P05106 788 aa22.61■■□□□ 1.21
LIME1-210ENST00000621325 SLC10A6Q3KNW5 377 aa22.61■■□□□ 1.21
LIME1-210ENST00000621325 WDR72Q3MJ13 1102 aa22.61■■□□□ 1.21
LIME1-210ENST00000621325 SDCBP2Q9H190 292 aa22.61■■□□□ 1.21
LIME1-210ENST00000621325 SETD4Q9NVD3 440 aa22.61■■□□□ 1.21
LIME1-210ENST00000621325 SLTMQ9NWH9 1034 aaKnown RBP eCLIP22.61■■□□□ 1.212e-10■■□□□ 12.5
LIME1-210ENST00000621325 PCYOX1Q9UHG3 505 aa22.61■■□□□ 1.21
LIME1-210ENST00000621325 FAM187AA6NFU0 413 aa22.6■■□□□ 1.21
LIME1-210ENST00000621325 TLR3O15455 904 aaKnown RBP22.6■■□□□ 1.21
LIME1-210ENST00000621325 TSPAN1O60635 241 aa22.6■■□□□ 1.21
LIME1-210ENST00000621325 SLC1A1P43005 524 aa22.6■■□□□ 1.21
LIME1-210ENST00000621325 TMEM62Q0P6H9 643 aa22.6■■□□□ 1.21
LIME1-210ENST00000621325 CXorf38Q8TB03 319 aa22.6■■□□□ 1.21
LIME1-210ENST00000621325 MRPL47Q9HD33 250 aaKnown RBP22.6■■□□□ 1.21
LIME1-210ENST00000621325 PLAAQ9Y263 795 aa22.6■■□□□ 1.21
LIME1-210ENST00000621325 USTQ9Y2C2 406 aa22.6■■□□□ 1.21
LIME1-210ENST00000621325 ZEB2O60315 1214 aa22.6■■□□□ 1.21
LIME1-210ENST00000621325 CYP1B1Q16678 543 aa22.6■■□□□ 1.21
LIME1-210ENST00000621325 CST9Q5W186 159 aa22.6■■□□□ 1.21
LIME1-210ENST00000621325 LENG1Q96BZ8 264 aaPredicted RBP22.6■■□□□ 1.21
LIME1-210ENST00000621325 MTUS1Q9ULD2 1270 aa22.6■■□□□ 1.21
LIME1-210ENST00000621325 PTPN22Q9Y2R2 807 aa22.6■■□□□ 1.21
LIME1-210ENST00000621325 DOCK3Q8IZD9 2030 aa22.59■■□□□ 1.21
LIME1-210ENST00000621325 HOXD8P13378 290 aaPredicted RBP22.59■■□□□ 1.21
LIME1-210ENST00000621325 COILP38432 576 aaPredicted RBP22.59■■□□□ 1.21
LIME1-210ENST00000621325 OR2W6PQ8NHA6 318 aa22.59■■□□□ 1.21
LIME1-210ENST00000621325 C1orf54Q8WWF1 131 aa22.59■■□□□ 1.21
LIME1-210ENST00000621325 ZDHHC18Q9NUE0 388 aa22.59■■□□□ 1.21
LIME1-210ENST00000621325 GINS2Q9Y248 185 aa22.59■■□□□ 1.21
LIME1-210ENST00000621325 GOLGA8KD6RF30 607 aa22.59■■□□□ 1.21
LIME1-210ENST00000621325 FSCN2O14926 492 aa22.59■■□□□ 1.21
LIME1-210ENST00000621325 DGKDQ16760 1214 aa22.59■■□□□ 1.21
LIME1-210ENST00000621325 KIZQ2M2Z5 673 aa22.59■■□□□ 1.21
LIME1-210ENST00000621325 DNAJC21Q5F1R6 531 aaKnown RBP22.59■■□□□ 1.21
LIME1-210ENST00000621325 ZNF667Q5HYK9 610 aa22.59■■□□□ 1.21
LIME1-210ENST00000621325 KCTD16Q68DU8 428 aa22.59■■□□□ 1.21
LIME1-210ENST00000621325 TMC3Q7Z5M5 1100 aa22.59■■□□□ 1.21
LIME1-210ENST00000621325 FEZF2Q8TBJ5 459 aa22.59■■□□□ 1.21
LIME1-210ENST00000621325 SMYD3Q9H7B4 428 aa22.59■■□□□ 1.21
LIME1-210ENST00000621325 PARVAQ9NVD7 372 aa22.59■■□□□ 1.21
LIME1-210ENST00000621325 ZSWIM8A7E2V4 1837 aa22.59■■□□□ 1.21
LIME1-210ENST00000621325 DYNC1LI2O43237 492 aaPredicted RBP22.58■■□□□ 1.21
LIME1-210ENST00000621325 TCF4P15884 667 aa22.58■■□□□ 1.21
LIME1-210ENST00000621325 GJC1P36383 396 aa22.58■■□□□ 1.21
LIME1-210ENST00000621325 TNFAIP2Q03169 654 aa22.58■■□□□ 1.21
LIME1-210ENST00000621325 CCDC105Q8IYK2 499 aa22.58■■□□□ 1.21
LIME1-210ENST00000621325 SH2D3CQ8N5H7 860 aa22.58■■□□□ 1.21
LIME1-210ENST00000621325 FAM76AQ8TAV0 307 aa22.58■■□□□ 1.21
LIME1-210ENST00000621325 HMGXB4Q9UGU5 601 aa22.58■■□□□ 1.21
LIME1-210ENST00000621325 SCINQ9Y6U3 715 aa22.58■■□□□ 1.21
LIME1-210ENST00000621325 CD19P15391 556 aa22.58■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms