RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 ATF7IP2Q5U623 682 aa14.69□□□□□ -0.06
CPSF1-212ENST00000616140 DDIASQ8IXT1 998 aa14.69□□□□□ -0.06
CPSF1-212ENST00000616140 CNTNAP4Q9C0A0 1308 aa14.69□□□□□ -0.06
CPSF1-212ENST00000616140 C19orf81C9J6K1 198 aa14.69□□□□□ -0.06
CPSF1-212ENST00000616140 IGF2BP3O00425 579 aaKnown RBP eCLIP14.69□□□□□ -0.06
CPSF1-212ENST00000616140 SREBF1P36956 1147 aa14.69□□□□□ -0.06
CPSF1-212ENST00000616140 UBA3Q8TBC4 463 aa14.69□□□□□ -0.06
CPSF1-212ENST00000616140 ATP8B4Q8TF62 1192 aa14.69□□□□□ -0.06
CPSF1-212ENST00000616140 PLEKHA5Q9HAU0 1116 aa14.69□□□□□ -0.06
CPSF1-212ENST00000616140 HACD3Q9P035 362 aa14.69□□□□□ -0.06
CPSF1-212ENST00000616140 TSR3Q9UJK0 312 aaKnown RBP14.69□□□□□ -0.06
CPSF1-212ENST00000616140 ZC3H13Q5T200 1668 aaKnown RBP14.68□□□□□ -0.06
CPSF1-212ENST00000616140 LOC100653049A0A140TA62 436 aa14.68□□□□□ -0.06
CPSF1-212ENST00000616140 KRT34O76011 436 aa14.68□□□□□ -0.06
CPSF1-212ENST00000616140 POLLQ9UGP5 575 aa14.68□□□□□ -0.06
CPSF1-212ENST00000616140 SULT1E1P49888 294 aa14.68□□□□□ -0.06
CPSF1-212ENST00000616140 IMPG1Q17R60 797 aa14.68□□□□□ -0.06
CPSF1-212ENST00000616140 MOXD1Q6UVY6 613 aa14.68□□□□□ -0.06
CPSF1-212ENST00000616140 C2orf69Q8N8R5 385 aa14.68□□□□□ -0.06
CPSF1-212ENST00000616140 RMDN1Q96DB5 314 aa14.68□□□□□ -0.06
CPSF1-212ENST00000616140 SERPINB12Q96P63 405 aa14.68□□□□□ -0.06
CPSF1-212ENST00000616140 EGFL8Q99944 293 aa14.68□□□□□ -0.06
CPSF1-212ENST00000616140 ELP3Q9H9T3 547 aa14.68□□□□□ -0.06
CPSF1-212ENST00000616140 DDX52Q9Y2R4 599 aaKnown RBP eCLIP14.68□□□□□ -0.06
CPSF1-212ENST00000616140 DIP2AQ14689 1571 aa14.68□□□□□ -0.06
CPSF1-212ENST00000616140 DIP2CQ9Y2E4 1556 aa14.68□□□□□ -0.06
CPSF1-212ENST00000616140 RASSF10A6NK89 507 aa14.68□□□□□ -0.06
CPSF1-212ENST00000616140 ENO3P13929 434 aaPredicted RBP14.68□□□□□ -0.06
CPSF1-212ENST00000616140 GFAPP14136 432 aa14.68□□□□□ -0.06
CPSF1-212ENST00000616140 HNRNPH1P31943 449 aaKnown RBP14.68□□□□□ -0.06
CPSF1-212ENST00000616140 RECQLP46063 649 aaPredicted RBP14.68□□□□□ -0.06
CPSF1-212ENST00000616140 EN1Q05925 392 aaPredicted RBP14.68□□□□□ -0.06
CPSF1-212ENST00000616140 TMEM62Q0P6H9 643 aa14.68□□□□□ -0.06
CPSF1-212ENST00000616140 NOP9Q86U38 636 aaKnown RBP14.68□□□□□ -0.06
CPSF1-212ENST00000616140 USP33Q8TEY7 942 aa14.68□□□□□ -0.06
CPSF1-212ENST00000616140 STAMBPL1Q96FJ0 436 aa14.68□□□□□ -0.06
CPSF1-212ENST00000616140 RTFDC1Q9BY42 306 aaPredicted RBP14.68□□□□□ -0.06
CPSF1-212ENST00000616140 CCDC90BQ9GZT6 254 aa14.68□□□□□ -0.06
CPSF1-212ENST00000616140 RIOX1Q9H6W3 641 aa14.68□□□□□ -0.06
CPSF1-212ENST00000616140 E2F8A0AVK6 867 aa14.68□□□□□ -0.06
CPSF1-212ENST00000616140 CAND2O75155 1236 aa14.68□□□□□ -0.06
CPSF1-212ENST00000616140 SPAG6O75602 509 aa14.68□□□□□ -0.06
CPSF1-212ENST00000616140 MAP3K6O95382 1288 aa14.68□□□□□ -0.06
CPSF1-212ENST00000616140 RRM1P23921 792 aa14.68□□□□□ -0.06
CPSF1-212ENST00000616140 RFC5P40937 340 aa14.68□□□□□ -0.06
CPSF1-212ENST00000616140 CPA2P48052 419 aa14.68□□□□□ -0.06
CPSF1-212ENST00000616140 KLC1Q07866 573 aa14.68□□□□□ -0.06
CPSF1-212ENST00000616140 NT5DC1Q5TFE4 455 aa14.68□□□□□ -0.06
CPSF1-212ENST00000616140 LRRC8EQ6NSJ5 796 aa14.68□□□□□ -0.06
CPSF1-212ENST00000616140 ARID3BQ8IVW6 561 aaPredicted RBP14.68□□□□□ -0.06
CPSF1-212ENST00000616140 RIBC1Q8N443 379 aaPredicted RBP14.68□□□□□ -0.06
CPSF1-212ENST00000616140 AIPL1Q9NZN9 384 aa14.68□□□□□ -0.06
CPSF1-212ENST00000616140 RNF181Q9P0P0 153 aa14.68□□□□□ -0.06
CPSF1-212ENST00000616140 IQGAP1P46940 1657 aa14.67□□□□□ -0.06
CPSF1-212ENST00000616140 F8VZ95 297 aa14.67□□□□□ -0.06
CPSF1-212ENST00000616140 ANP32DO95626 131 aa14.67□□□□□ -0.06
CPSF1-212ENST00000616140 RARGP13631 454 aa14.67□□□□□ -0.06
CPSF1-212ENST00000616140 CYP11B1P15538 503 aa14.67□□□□□ -0.06
CPSF1-212ENST00000616140 SERPINB9P50453 376 aa14.67□□□□□ -0.06
CPSF1-212ENST00000616140 ARHGDIAP52565 204 aa14.67□□□□□ -0.06
CPSF1-212ENST00000616140 PSMC6P62333 389 aa14.67□□□□□ -0.06
CPSF1-212ENST00000616140 CUL2Q13617 745 aa14.67□□□□□ -0.06
CPSF1-212ENST00000616140 ZNF235Q14590 738 aa14.67□□□□□ -0.06
CPSF1-212ENST00000616140 USP10Q14694 798 aaKnown RBP14.67□□□□□ -0.06
CPSF1-212ENST00000616140 FAXCQ5TGI0 409 aa14.67□□□□□ -0.06
CPSF1-212ENST00000616140 MROH9Q5TGP6 573 aa14.67□□□□□ -0.06
CPSF1-212ENST00000616140 SLC30A10Q6XR72 485 aa14.67□□□□□ -0.06
CPSF1-212ENST00000616140 COL23A1Q86Y22 540 aaPredicted RBP14.67□□□□□ -0.06
CPSF1-212ENST00000616140 PRMT6Q96LA8 375 aaPredicted RBP14.67□□□□□ -0.06
CPSF1-212ENST00000616140 C17orf75Q9HAS0 396 aa14.67□□□□□ -0.06
CPSF1-212ENST00000616140 PIK3C2BO00750 1634 aa14.67□□□□□ -0.06
CPSF1-212ENST00000616140 SALL1Q9NSC2 1324 aa14.67□□□□□ -0.06
CPSF1-212ENST00000616140 DNAL1Q4LDG9 190 aa14.67□□□□□ -0.06
CPSF1-212ENST00000616140 APPL2Q8NEU8 664 aa14.67□□□□□ -0.06
CPSF1-212ENST00000616140 ACTRT1Q8TDG2 376 aa14.67□□□□□ -0.06
CPSF1-212ENST00000616140 TAS1R2Q8TE23 839 aa14.67□□□□□ -0.06
CPSF1-212ENST00000616140 DEFB129Q9H1M3 183 aa14.67□□□□□ -0.06
CPSF1-212ENST00000616140 ABT1Q9ULW3 272 aaKnown RBP14.67□□□□□ -0.06
CPSF1-212ENST00000616140 TECPR2O15040 1411 aa14.67□□□□□ -0.06
CPSF1-212ENST00000616140 SYCE1LA8MT33 242 aa14.67□□□□□ -0.06
CPSF1-212ENST00000616140 AARSP49588 968 aaKnown RBP eCLIP14.67□□□□□ -0.06
CPSF1-212ENST00000616140 TKFCQ3LXA3 575 aa14.67□□□□□ -0.06
CPSF1-212ENST00000616140 ANGEL2Q5VTE6 544 aaKnown RBP14.67□□□□□ -0.06
CPSF1-212ENST00000616140 ZNF720Q7Z2F6 126 aa14.67□□□□□ -0.06
CPSF1-212ENST00000616140 ARMC2Q8NEN0 867 aa14.67□□□□□ -0.06
CPSF1-212ENST00000616140 HDAC7Q8WUI4 952 aa14.67□□□□□ -0.06
CPSF1-212ENST00000616140 IL17RBQ9NRM6 502 aa14.67□□□□□ -0.06
CPSF1-212ENST00000616140 SLC8A2Q9UPR5 921 aa14.67□□□□□ -0.06
CPSF1-212ENST00000616140 TRIM49D1C9J1S8 452 aa14.66□□□□□ -0.06
CPSF1-212ENST00000616140 DYNC1LI2O43237 492 aaPredicted RBP14.66□□□□□ -0.06
CPSF1-212ENST00000616140 GZMAP12544 262 aa14.66□□□□□ -0.06
CPSF1-212ENST00000616140 CCND1P24385 295 aa14.66□□□□□ -0.06
CPSF1-212ENST00000616140 OVGP1Q12889 678 aa14.66□□□□□ -0.06
CPSF1-212ENST00000616140 ARHGEF6Q15052 776 aa14.66□□□□□ -0.06
CPSF1-212ENST00000616140 CNGA3Q16281 694 aa14.66□□□□□ -0.06
CPSF1-212ENST00000616140 FASTKD5Q7L8L6 764 aaKnown RBP14.66□□□□□ -0.06
CPSF1-212ENST00000616140 LRRC6Q86X45 466 aa14.66□□□□□ -0.06
CPSF1-212ENST00000616140 RNF217Q8TC41 542 aa14.66□□□□□ -0.06
CPSF1-212ENST00000616140 DUSP9Q99956 384 aaKnown RBP14.66□□□□□ -0.06
CPSF1-212ENST00000616140 METTL5Q9NRN9 209 aaKnown RBP14.66□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms