RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 CDY1Q9Y6F8 540 aa17.8■□□□□ 0.44
CCDC28A-202ENST00000611852 XIRP2A4UGR9 3374 aa17.79■□□□□ 0.44
CCDC28A-202ENST00000611852 TSC2P49815 1807 aa17.79■□□□□ 0.44
CCDC28A-202ENST00000611852 VNN1O95497 513 aa17.79■□□□□ 0.44
CCDC28A-202ENST00000611852 KCNA5P22460 613 aa17.79■□□□□ 0.44
CCDC28A-202ENST00000611852 GTF2H1P32780 548 aa17.79■□□□□ 0.44
CCDC28A-202ENST00000611852 OR1D2P34982 312 aa17.79■□□□□ 0.44
CCDC28A-202ENST00000611852 GCLMP48507 274 aa17.79■□□□□ 0.44
CCDC28A-202ENST00000611852 MYL6P60660 151 aa17.79■□□□□ 0.44
CCDC28A-202ENST00000611852 NCOA4Q13772 614 aa17.79■□□□□ 0.44
CCDC28A-202ENST00000611852 CTXN3Q4LDR2 81 aa17.79■□□□□ 0.44
CCDC28A-202ENST00000611852 CT47A1Q5JQC4 288 aaPredicted RBP17.79■□□□□ 0.44
CCDC28A-202ENST00000611852 OVOS1Q6IE37 1185 aa17.79■□□□□ 0.44
CCDC28A-202ENST00000611852 SLC8B1Q6J4K2 584 aa17.79■□□□□ 0.44
CCDC28A-202ENST00000611852 ZNF280DQ6N043 979 aa17.79■□□□□ 0.44
CCDC28A-202ENST00000611852 PALB2Q86YC2 1186 aa17.79■□□□□ 0.44
CCDC28A-202ENST00000611852 XYLT2Q9H1B5 865 aa17.79■□□□□ 0.44
CCDC28A-202ENST00000611852 FBXL5Q9UKA1 691 aa17.79■□□□□ 0.44
CCDC28A-202ENST00000611852 DSEQ9UL01 958 aa17.79■□□□□ 0.44
CCDC28A-202ENST00000611852 BARX2Q9UMQ3 279 aaPredicted RBP17.79■□□□□ 0.44
CCDC28A-202ENST00000611852 SNX9Q9Y5X1 595 aa17.79■□□□□ 0.44
CCDC28A-202ENST00000611852 SPTBN5Q9NRC6 3674 aaKnown RBP17.79■□□□□ 0.44
CCDC28A-202ENST00000611852 PLXNA3P51805 1871 aa17.78■□□□□ 0.44
CCDC28A-202ENST00000611852 TGM5O43548 720 aa17.78■□□□□ 0.44
CCDC28A-202ENST00000611852 STAU1O95793 577 aaKnown RBP17.78■□□□□ 0.44
CCDC28A-202ENST00000611852 GLUD1P00367 558 aa17.78■□□□□ 0.44
CCDC28A-202ENST00000611852 C1RP00736 705 aa17.78■□□□□ 0.44
CCDC28A-202ENST00000611852 SRGAP2BP0DMP2 458 aa17.78■□□□□ 0.44
CCDC28A-202ENST00000611852 ATICP31939 592 aa17.78■□□□□ 0.44
CCDC28A-202ENST00000611852 RAB33AQ14088 237 aa17.78■□□□□ 0.44
CCDC28A-202ENST00000611852 CCDC40Q4G0X9 1142 aa17.78■□□□□ 0.44
CCDC28A-202ENST00000611852 DCAF17Q5H9S7 520 aaPredicted RBP17.78■□□□□ 0.44
CCDC28A-202ENST00000611852 TCERG1LQ5VWI1 586 aa17.78■□□□□ 0.44
CCDC28A-202ENST00000611852 WSCD1Q658N2 575 aa17.78■□□□□ 0.44
CCDC28A-202ENST00000611852 LILRA6Q6PI73 481 aa17.78■□□□□ 0.44
CCDC28A-202ENST00000611852 CASP10Q92851 521 aa17.78■□□□□ 0.44
CCDC28A-202ENST00000611852 SLC35C1Q96A29 364 aa17.78■□□□□ 0.44
CCDC28A-202ENST00000611852 MMRN2Q9H8L6 949 aa17.78■□□□□ 0.44
CCDC28A-202ENST00000611852 TMEM8AQ9HCN3 771 aa17.78■□□□□ 0.44
CCDC28A-202ENST00000611852 THEGQ9P2T0 379 aa17.78■□□□□ 0.44
CCDC28A-202ENST00000611852 L1RE1Q9UN81 338 aa17.78■□□□□ 0.44
CCDC28A-202ENST00000611852 H3BQ06 376 aaPredicted RBP17.77■□□□□ 0.44
CCDC28A-202ENST00000611852 STX10O60499 249 aa17.77■□□□□ 0.44
CCDC28A-202ENST00000611852 HUS1O60921 280 aa17.77■□□□□ 0.44
CCDC28A-202ENST00000611852 FGFR1OPO95684 399 aaKnown RBP17.77■□□□□ 0.44
CCDC28A-202ENST00000611852 GNA14O95837 355 aa17.77■□□□□ 0.44
CCDC28A-202ENST00000611852 MARSP56192 900 aaKnown RBP17.77■□□□□ 0.44
CCDC28A-202ENST00000611852 TFF2Q03403 129 aa17.77■□□□□ 0.44
CCDC28A-202ENST00000611852 STX1AQ16623 288 aa17.77■□□□□ 0.44
CCDC28A-202ENST00000611852 SOWAHAQ2M3V2 549 aa17.77■□□□□ 0.44
CCDC28A-202ENST00000611852 KRT39Q6A163 491 aa17.77■□□□□ 0.44
CCDC28A-202ENST00000611852 LIMS2Q7Z4I7 341 aa17.77■□□□□ 0.44
CCDC28A-202ENST00000611852 PDCL2Q8N4E4 241 aa17.77■□□□□ 0.44
CCDC28A-202ENST00000611852 MSLNLQ96KJ4 702 aa17.77■□□□□ 0.44
CCDC28A-202ENST00000611852 OXCT2Q9BYC2 517 aaPredicted RBP17.77■□□□□ 0.44
CCDC28A-202ENST00000611852 VRTNQ9H8Y1 702 aa17.77■□□□□ 0.44
CCDC28A-202ENST00000611852 ANO10Q9NW15 660 aa17.77■□□□□ 0.44
CCDC28A-202ENST00000611852 HLA-DRAP01903 254 aa17.77■□□□□ 0.43
CCDC28A-202ENST00000611852 SPATA31D3P0C874 917 aa17.77■□□□□ 0.43
CCDC28A-202ENST00000611852 ROR1Q01973 937 aa17.77■□□□□ 0.43
CCDC28A-202ENST00000611852 WDR72Q3MJ13 1102 aa17.77■□□□□ 0.43
CCDC28A-202ENST00000611852 ANKRD54Q6NXT1 300 aa17.77■□□□□ 0.43
CCDC28A-202ENST00000611852 SPATA31D4Q6ZUB0 917 aa17.77■□□□□ 0.43
CCDC28A-202ENST00000611852 DPH6Q7L8W6 267 aa17.77■□□□□ 0.43
CCDC28A-202ENST00000611852 METTL23Q86XA0 190 aa17.77■□□□□ 0.43
CCDC28A-202ENST00000611852 TMEM86AQ8N2M4 240 aa17.77■□□□□ 0.43
CCDC28A-202ENST00000611852 TOP6BLQ8N6T0 577 aa17.77■□□□□ 0.43
CCDC28A-202ENST00000611852 TAS1R2Q8TE23 839 aa17.77■□□□□ 0.43
CCDC28A-202ENST00000611852 PIK3CAP42336 1068 aa17.76■□□□□ 0.43
CCDC28A-202ENST00000611852 MXI1P50539 228 aa17.76■□□□□ 0.43
CCDC28A-202ENST00000611852 SGSM1Q2NKQ1 1148 aa17.76■□□□□ 0.43
CCDC28A-202ENST00000611852 SKOR2Q2VWA4 1001 aaPredicted RBP17.76■□□□□ 0.43
CCDC28A-202ENST00000611852 ZNF699Q32M78 642 aa17.76■□□□□ 0.43
CCDC28A-202ENST00000611852 CBWD6Q4V339 395 aa17.76■□□□□ 0.43
CCDC28A-202ENST00000611852 CBWD3Q5JTY5 395 aa17.76■□□□□ 0.43
CCDC28A-202ENST00000611852 CBWD5Q5RIA9 395 aa17.76■□□□□ 0.43
CCDC28A-202ENST00000611852 C11orf57Q6ZUT1 292 aaPredicted RBP17.76■□□□□ 0.43
CCDC28A-202ENST00000611852 TRIM59Q8IWR1 403 aa17.76■□□□□ 0.43
CCDC28A-202ENST00000611852 ZNF461Q8TAF7 563 aa17.76■□□□□ 0.43
CCDC28A-202ENST00000611852 TAF4BQ92750 862 aa17.76■□□□□ 0.43
CCDC28A-202ENST00000611852 RTP3Q9BQQ7 232 aa17.76■□□□□ 0.43
CCDC28A-202ENST00000611852 MAN1C1Q9NR34 630 aa17.76■□□□□ 0.43
CCDC28A-202ENST00000611852 DZANK1Q9NVP4 752 aa17.76■□□□□ 0.43
CCDC28A-202ENST00000611852 WDR27A2RRH5 827 aa17.75■□□□□ 0.43
CCDC28A-202ENST00000611852 OR6C75A6NL08 312 aa17.75■□□□□ 0.43
CCDC28A-202ENST00000611852 ABLIM3O94929 683 aa17.75■□□□□ 0.43
CCDC28A-202ENST00000611852 ASS1P00966 412 aaKnown RBP17.75■□□□□ 0.43
CCDC28A-202ENST00000611852 CCDC192P0DO97 292 aa17.75■□□□□ 0.43
CCDC28A-202ENST00000611852 HOXB8P17481 243 aaPredicted RBP17.75■□□□□ 0.43
CCDC28A-202ENST00000611852 ARPP19P56211 112 aa17.75■□□□□ 0.43
CCDC28A-202ENST00000611852 TNNC1P63316 161 aa17.75■□□□□ 0.43
CCDC28A-202ENST00000611852 TYRO3Q06418 890 aa17.75■□□□□ 0.43
CCDC28A-202ENST00000611852 TPD52L1Q16890 204 aaPredicted RBP17.75■□□□□ 0.43
CCDC28A-202ENST00000611852 LEXMQ3ZCV2 418 aa17.75■□□□□ 0.43
CCDC28A-202ENST00000611852 SYCE2Q6PIF2 218 aa17.75■□□□□ 0.43
CCDC28A-202ENST00000611852 IRF2BP1Q8IU81 584 aa17.75■□□□□ 0.43
CCDC28A-202ENST00000611852 ADGRF2Q8IZF7 708 aa17.75■□□□□ 0.43
CCDC28A-202ENST00000611852 OR10T2Q8NGX3 314 aa17.75■□□□□ 0.43
CCDC28A-202ENST00000611852 SPATA18Q8TC71 538 aa17.75■□□□□ 0.43
CCDC28A-202ENST00000611852 HDAC7Q8WUI4 952 aa17.75■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms