RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 ARHGEF4Q9NR80 690 aa5.43□□□□□ -1.54
LINC00540-201ENST00000611481 ZNF112Q9UJU3 913 aa5.43□□□□□ -1.54
LINC00540-201ENST00000611481 CDC42EP3Q9UKI2 254 aa5.43□□□□□ -1.54
LINC00540-201ENST00000611481 AGTPBP1Q9UPW5 1226 aa5.43□□□□□ -1.54
LINC00540-201ENST00000611481 R3HCC1Q9Y3T6 440 aaKnown RBP5.43□□□□□ -1.54
LINC00540-201ENST00000611481 ATP23Q9Y6H3 246 aa5.43□□□□□ -1.54
LINC00540-201ENST00000611481 NAV2Q8IVL1 2488 aa5.42□□□□□ -1.54
LINC00540-201ENST00000611481 CEP250Q9BV73 2442 aa5.42□□□□□ -1.54
LINC00540-201ENST00000611481 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP5.42□□□□□ -1.54
LINC00540-201ENST00000611481 BLACEA4D250 179 aa5.42□□□□□ -1.54
LINC00540-201ENST00000611481 PMS2P1A4D2B8 440 aa5.42□□□□□ -1.54
LINC00540-201ENST00000611481 TRIM75PA6NK02 468 aa5.42□□□□□ -1.54
LINC00540-201ENST00000611481 CAPN14A8MX76 684 aa5.42□□□□□ -1.54
LINC00540-201ENST00000611481 CA3P07451 260 aa5.42□□□□□ -1.54
LINC00540-201ENST00000611481 KCNJ4P48050 445 aa5.42□□□□□ -1.54
LINC00540-201ENST00000611481 FKBP1AP62942 108 aaKnown RBP5.42□□□□□ -1.54
LINC00540-201ENST00000611481 PAK1Q13153 545 aa5.42□□□□□ -1.54
LINC00540-201ENST00000611481 HERC4Q5GLZ8 1057 aaPredicted RBP5.42□□□□□ -1.54
LINC00540-201ENST00000611481 DPY19L2P1Q6NXN4 242 aa5.42□□□□□ -1.54
LINC00540-201ENST00000611481 PCSK4Q6UW60 755 aa5.42□□□□□ -1.54
LINC00540-201ENST00000611481 EP400NLQ6ZTU2 488 aa5.42□□□□□ -1.54
LINC00540-201ENST00000611481 FILIP1Q7Z7B0 1213 aa5.42□□□□□ -1.54
LINC00540-201ENST00000611481 KIAA2013Q8IYS2 634 aa5.42□□□□□ -1.54
LINC00540-201ENST00000611481 TRPV1Q8NER1 839 aa5.42□□□□□ -1.54
LINC00540-201ENST00000611481 WDR48Q8TAF3 677 aa5.42□□□□□ -1.54
LINC00540-201ENST00000611481 USP6NLQ92738 828 aa5.42□□□□□ -1.54
LINC00540-201ENST00000611481 ISCA1Q9BUE6 129 aa5.42□□□□□ -1.54
LINC00540-201ENST00000611481 BTBD2Q9BX70 525 aa5.42□□□□□ -1.54
LINC00540-201ENST00000611481 ST7Q9NRC1 585 aa5.42□□□□□ -1.54
LINC00540-201ENST00000611481 FLRT1Q9NZU1 646 aa5.42□□□□□ -1.54
LINC00540-201ENST00000611481 AFG3L2Q9Y4W6 797 aa5.42□□□□□ -1.54
LINC00540-201ENST00000611481 UTYO14607 1347 aa5.42□□□□□ -1.54
LINC00540-201ENST00000611481 ZFYVE26Q68DK2 2539 aa5.41□□□□□ -1.54
LINC00540-201ENST00000611481 hCG_2014768A0A024R1R8 64 aa5.41□□□□□ -1.54
LINC00540-201ENST00000611481 A0A0G2JNJ9 132 aa5.41□□□□□ -1.54
LINC00540-201ENST00000611481 H3BQ06 376 aaPredicted RBP5.41□□□□□ -1.54
LINC00540-201ENST00000611481 SLC26A4O43511 780 aa5.41□□□□□ -1.54
LINC00540-201ENST00000611481 CLSTN1O94985 981 aa5.41□□□□□ -1.54
LINC00540-201ENST00000611481 FGBP02675 491 aa5.41□□□□□ -1.54
LINC00540-201ENST00000611481 IBSPP21815 317 aaPredicted RBP5.41□□□□□ -1.54
LINC00540-201ENST00000611481 AOAHP28039 575 aa5.41□□□□□ -1.54
LINC00540-201ENST00000611481 AVPR2P30518 371 aa5.41□□□□□ -1.54
LINC00540-201ENST00000611481 PRKAR2BP31323 418 aa5.41□□□□□ -1.54
LINC00540-201ENST00000611481 CYP2C19P33261 490 aa5.41□□□□□ -1.54
LINC00540-201ENST00000611481 HGFACQ04756 655 aa5.41□□□□□ -1.54
LINC00540-201ENST00000611481 LRRC41Q15345 812 aa5.41□□□□□ -1.54
LINC00540-201ENST00000611481 PTPROQ16827 1216 aa5.41□□□□□ -1.54
LINC00540-201ENST00000611481 FIGNQ5HY92 759 aa5.41□□□□□ -1.54
LINC00540-201ENST00000611481 CCAR1Q8IX12 1150 aaKnown RBP5.41□□□□□ -1.54
LINC00540-201ENST00000611481 TMEM199Q8N511 208 aa5.41□□□□□ -1.54
LINC00540-201ENST00000611481 SHCBP1Q8NEM2 672 aa5.41□□□□□ -1.54
LINC00540-201ENST00000611481 OR14K1Q8NGZ2 314 aa5.41□□□□□ -1.54
LINC00540-201ENST00000611481 TMEM176AQ96HP8 235 aa5.41□□□□□ -1.54
LINC00540-201ENST00000611481 CDC5LQ99459 802 aaKnown RBP5.41□□□□□ -1.54
LINC00540-201ENST00000611481 BRINP2Q9C0B6 783 aa5.41□□□□□ -1.54
LINC00540-201ENST00000611481 SLC2A4RGQ9NR83 387 aa5.41□□□□□ -1.54
LINC00540-201ENST00000611481 TMOD2Q9NZR1 351 aa5.41□□□□□ -1.54
LINC00540-201ENST00000611481 Q9UFV3 132 aa5.41□□□□□ -1.54
LINC00540-201ENST00000611481 TNFRSF18Q9Y5U5 241 aa5.41□□□□□ -1.54
LINC00540-201ENST00000611481 SPEF2Q9C093 1822 aa5.41□□□□□ -1.54
LINC00540-201ENST00000611481 TRAV20A0A0B4J274 112 aa5.4□□□□□ -1.54
LINC00540-201ENST00000611481 MAN2B1O00754 1011 aa5.4□□□□□ -1.54
LINC00540-201ENST00000611481 WNT9AO14904 365 aa5.4□□□□□ -1.54
LINC00540-201ENST00000611481 PDE8AO60658 829 aa5.4□□□□□ -1.54
LINC00540-201ENST00000611481 LPXNO60711 386 aa5.4□□□□□ -1.54
LINC00540-201ENST00000611481 HERVK_113P62684 666 aa5.4□□□□□ -1.54
LINC00540-201ENST00000611481 RRP1BQ14684 758 aaKnown RBP5.4□□□□□ -1.54
LINC00540-201ENST00000611481 DDR2Q16832 855 aa5.4□□□□□ -1.54
LINC00540-201ENST00000611481 MFSD14BQ5SR56 506 aa5.4□□□□□ -1.54
LINC00540-201ENST00000611481 CCDC181Q5TID7 509 aa5.4□□□□□ -1.54
LINC00540-201ENST00000611481 GPR142Q7Z601 462 aa5.4□□□□□ -1.54
LINC00540-201ENST00000611481 FAM83AQ86UY5 434 aa5.4□□□□□ -1.54
LINC00540-201ENST00000611481 PTRH1Q86Y79 214 aaKnown RBP5.4□□□□□ -1.54
LINC00540-201ENST00000611481 ADHFE1Q8IWW8 467 aa5.4□□□□□ -1.54
LINC00540-201ENST00000611481 SCYL3Q8IZE3 742 aa5.4□□□□□ -1.54
LINC00540-201ENST00000611481 TDRD7Q8NHU6 1098 aaKnown RBP5.4□□□□□ -1.54
LINC00540-201ENST00000611481 PNISRQ8TF01 805 aaKnown RBP5.4□□□□□ -1.54
LINC00540-201ENST00000611481 EDC3Q96F86 508 aaKnown RBP5.4□□□□□ -1.54
LINC00540-201ENST00000611481 TTPALQ9BTX7 342 aa5.4□□□□□ -1.54
LINC00540-201ENST00000611481 ZSWIM4Q9H7M6 989 aa5.4□□□□□ -1.54
LINC00540-201ENST00000611481 IL23AQ9NPF7 189 aa5.4□□□□□ -1.54
LINC00540-201ENST00000611481 CATSPERZQ9NTU4 200 aa5.4□□□□□ -1.54
LINC00540-201ENST00000611481 DLL3Q9NYJ7 618 aa5.4□□□□□ -1.54
LINC00540-201ENST00000611481 BTBD7Q9P203 1132 aa5.4□□□□□ -1.54
LINC00540-201ENST00000611481 FRMD4AQ9P2Q2 1039 aaPredicted RBP5.4□□□□□ -1.54
LINC00540-201ENST00000611481 MORF4L1Q9UBU8 362 aa5.4□□□□□ -1.54
LINC00540-201ENST00000611481 TBX21Q9UL17 535 aa5.4□□□□□ -1.54
LINC00540-201ENST00000611481 PTPRFP10586 1907 aa5.4□□□□□ -1.55
LINC00540-201ENST00000611481 DMXL1Q9Y485 3027 aa5.4□□□□□ -1.55
LINC00540-201ENST00000611481 TRIOO75962 3097 aa5.39□□□□□ -1.55
LINC00540-201ENST00000611481 TMEM191CA6NGB0 347 aa5.39□□□□□ -1.55
LINC00540-201ENST00000611481 PRAMEF25A6NGN4 478 aa5.39□□□□□ -1.55
LINC00540-201ENST00000611481 CYSRT1A8MQ03 144 aa5.39□□□□□ -1.55
LINC00540-201ENST00000611481 SNAP23O00161 211 aa5.39□□□□□ -1.55
LINC00540-201ENST00000611481 CYBAP13498 195 aa5.39□□□□□ -1.55
LINC00540-201ENST00000611481 IL1R1P14778 569 aa5.39□□□□□ -1.55
LINC00540-201ENST00000611481 ATP2A2P16615 1042 aaKnown RBP5.39□□□□□ -1.55
LINC00540-201ENST00000611481 KRT4P19013 534 aa5.39□□□□□ -1.55
LINC00540-201ENST00000611481 MAPK4P31152 587 aa5.39□□□□□ -1.55
LINC00540-201ENST00000611481 MC4RP32245 332 aa5.39□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 114.6 ms